# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gqzA 274 1.47e-02 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 2.36e-02 1xubA 298 2.16e-01 1pzgA 331 5.82e-01 c.2.1.5,d.162.1.1 95425,95426 1oe4A 247 6.26e-01 c.18.1.3 86895 1ixlA 131 1.66e+00 d.38.1.5 90717 1qx4A 274 1.89e+00 b.43.4.2,c.25.1.1 104624,104625 1k6dA 220 1.97e+00 c.124.1.2 72082 1hzdA 272 2.55e+00 c.14.1.3 65969 1kkoA 413 2.87e+00 c.1.11.2,d.54.1.1 68675,68676 1nnsA 326 3.78e+00 c.88.1.1 85910 1umkA 275 5.96e+00 1nnxA 109 6.12e+00 b.40.10.1 92013 1oi6A 205 8.00e+00 b.82.1.1 103940 16pk 415 9.47e+00 16pk c.86.1.1 35454 1o6sB 105 1.02e+01 b.1.6.1 81096 1q6uA 245 1.17e+01 d.26.1.1 95998 1ni9A 338 1.21e+01 e.7.1.2 85739 1q6hA 224 1.21e+01 d.26.1.1 95975 1evhA 112 1.32e+01 1evhA b.55.1.4 26997 1ep3B 262 1.32e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1mjfA 281 1.35e+01 c.66.1.17 79198 1b00A 127 1.36e+01 3chy c.23.1.1 31122 1o04A 500 1.36e+01 c.82.1.1 86508 1o59A 355 1.38e+01 b.18.1.22,b.18.1.22 92495,92496 1n1bA 549 1.47e+01 a.102.4.1,a.128.1.3 79799,79800 1gvfA 286 1.50e+01 c.1.10.2 70599 1jhjA 171 1.51e+01 b.18.1.9 66714 1io7A 368 1.59e+01 1f4tA a.104.1.1 18971 1gtzA 156 1.78e+01 c.23.13.1 70539 1vknA 351 1.79e+01 c.2.1.3,d.81.1.1 108676,108677 1q6oA 216 1.82e+01 c.1.2.3 95986 1sdjA 310 1.91e+01 d.21.1.2,d.21.1.2 98807,98808 1bjt 793 2.03e+01 1bjt e.11.1.1 43249 1sr8A 298 2.10e+01 e.54.1.1 105959 1n8jA 186 2.23e+01 c.47.1.10 85401 2dfkA 402 2.23e+01 1k8kE 178 2.28e+01 a.148.1.1 68311 1g55A 343 2.33e+01 1g55A c.66.1.26 34247 1lqaA 346 2.38e+01 c.1.7.1 84674 1sz7A 200 2.78e+01 1vljA 407 2.89e+01 e.22.1.2 108832 1s1qA 145 2.90e+01 d.20.1.2 98351 1e30A 155 2.93e+01 1rcy b.6.1.1 23016 1ei6A 406 3.07e+01 c.76.1.4 90443 1php 394 3.13e+01 16pk c.86.1.1 35452 1szqA 483 3.25e+01 e.44.1.1 99045 1prxA 224 3.26e+01 1prxA c.47.1.10 33076 1zelA 298 3.28e+01 1s7zA 117 3.39e+01 a.159.3.1 98715 1i0rA 169 3.56e+01 1i0rA b.45.1.2 61489 2cfuA 658 3.62e+01 1b56 135 3.78e+01 1hmt b.60.1.2 27183 1n3lA 372 3.80e+01 c.26.1.1 79966 1ogsA 497 3.85e+01 b.71.1.2,c.1.8.3 86997,86998 1uk8A 282 4.07e+01 c.69.1.10 107907 1m8uA 173 4.17e+01 b.11.1.1,b.11.1.1 91233,91234 1t2dA 322 4.37e+01 c.2.1.5,d.162.1.1 99084,99085 1ia8A 289 4.44e+01 1ia8A d.144.1.7 62112 1ku0A 388 4.51e+01 c.69.1.18 72994 1bx4A 345 4.60e+01 1bx4A c.72.1.1 34935 1dnv 437 4.61e+01 1dnv b.121.5.3 23332 1o98A 511 4.65e+01 c.105.1.1,c.76.1.3 86684,86685 1nc5A 373 4.73e+01 a.102.1.6 85548 1kb0A 677 4.78e+01 a.3.1.6,b.70.1.1 68378,68379 1cq3A 233 4.82e+01 1cq3A b.27.1.1 23923 1aozA 552 4.99e+01 1aozA b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 1p80A 753 5.00e+01 c.23.16.3,e.5.1.1 94337,94338 1qyaA 307 5.04e+01 d.21.1.2,d.21.1.2 104653,104654 1hynP 379 5.09e+01 1hynP d.112.1.2 61408 1rreA 200 5.15e+01 d.14.1.10 97791 1jb9A 316 5.16e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1ss4A 153 5.23e+01 d.32.1.6 105976 1senA 164 5.25e+01 c.47.1.1 105465 2blnA 305 5.32e+01 1hw5A 210 5.40e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1t13A 158 5.51e+01 1rp0A 284 5.53e+01 1jflA 228 5.63e+01 c.78.2.1,c.78.2.1 71656,71657 1nnvA 110 5.70e+01 d.17.7.1 92012 1qd1A 325 5.72e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1q8fA 313 5.94e+01 c.70.1.1 96203 1rgyA 360 5.97e+01 e.3.1.1 97456 1rzuA 485 6.04e+01 c.87.1.8 105140 1bia 321 6.24e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 2gfaA 119 6.33e+01 1ogiA 303 6.40e+01 b.43.4.2,c.25.1.1 92914,92915 1tbaA 67 6.41e+01 1tbaA a.15.1.1 16380 1tjvA 474 6.44e+01 a.127.1.1 107054 1j5pA 253 6.56e+01 d.81.1.3,c.2.1.3 71577,83092 1r44A 202 6.68e+01 d.65.1.4 104787 1fnd 314 6.71e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1b7yB 785 6.82e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1t9bA 677 6.85e+01 1ma3A 253 6.91e+01 c.31.1.5 78883 1rsy 152 6.92e+01 1rsy b.7.1.2 23192 1pzsA 208 7.04e+01 b.1.8.1 104397 1bx1A 314 7.05e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1iv3A 152 7.22e+01 d.79.5.1 76828 1oo0A 147 7.28e+01 d.232.1.1 87182 1lyvA 306 7.34e+01 c.45.1.2 74348 1yrcA 414 7.36e+01 1k7wA 468 7.37e+01 a.127.1.1 72130 1ry6A 360 7.41e+01 c.37.1.9 98090 1ni4B 341 7.48e+01 c.36.1.7,c.48.1.2 85729,85730 1e3dA 266 7.54e+01 2frvA e.19.1.1 59188 1tw9A 206 7.62e+01 a.45.1.1,c.47.1.5 107381,107382 2gfgA 193 7.62e+01 1s5jA 847 7.67e+01 1vpt 348 7.71e+01 3mag c.66.1.25 34207 1br9 194 7.73e+01 1br9 b.40.3.1 25235 1h5uA 842 7.81e+01 1a8i c.87.1.4 60655 1q5zA 177 8.08e+01 a.196.1.1 95954 1a8y 367 8.09e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1fcyA 236 8.11e+01 2lbd a.123.1.1 19282 1izmA 184 8.22e+01 a.199.1.1 90725 1csn 298 8.26e+01 1csn d.144.1.7 41664 1v4pA 157 8.28e+01 1ubkS 267 8.34e+01 e.19.1.1 88423 1v6sA 390 8.59e+01 c.86.1.1 100424 1ivnA 190 8.76e+01 c.23.10.5 83719 1kewA 361 8.81e+01 c.2.1.2 68544 1o20A 427 8.82e+01 c.82.1.1 86556 1aun 208 8.86e+01 1thv b.25.1.1 23900 1whi 122 8.91e+01 1whi b.39.1.1 24810 1x8vA 455 8.93e+01 1c4rA 182 8.93e+01 1c4rA b.29.1.4 24229