Best Alignments for T0301

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1w61A/T0301-1w61A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w61A/T0301-1w61A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6158e-021.79e-20
1tm0A/T0301-1tm0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tm0A/T0301-1tm0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9614e-022.45e-17 d.21.1.3
1u1wA/T0301-1u1wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u1wA/T0301-1u1wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3428e-024.69e-21
1xubA/T0301-1xubA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xubA/T0301-1xubA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4163e-025.99e-19
2gkeA/T0301-2gkeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gkeA/T0301-2gkeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8919e-022.94e-17
1gqzA/T0301-1gqzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gqzA/T0301-1gqzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.3006e-024.43e-19 d.21.1.1
d.21.1.1
1t6kA/T0301-1t6kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t6kA/T0301-1t6kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.1014e-025.52e-17
1ym5A/T0301-1ym5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ym5A/T0301-1ym5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7961e-014.46e-20
2azpA/T0301-2azpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2azpA/T0301-2azpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9748e-013.67e-21
1oe4A/T0301-1oe4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oe4A/T0301-1oe4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6541e+008.34e-07 c.18.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001