# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tm0A 350 6.25e-02 d.21.1.3 107147 1u1wA 298 1.13e-01 1xubA 298 1.52e-01 2gkeA 274 1.67e-01 1gqzA 274 1.97e-01 d.21.1.1,d.21.1.1 83311,83312 1w61A 414 2.66e-01 1t6kA 278 3.01e-01 1bwzA 274 3.12e-01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1ym5A 300 4.58e-01 1dp4A 435 2.46e+00 1dp4A c.93.1.1 35710 1azsB 212 3.33e+00 1azsA d.58.29.1 39423 1o0pA 104 3.67e+00 d.58.7.1 86535 1oe4A 247 3.79e+00 c.18.1.3 86895 2b3nA 159 4.25e+00 1p3dA 475 4.69e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1dkmA 410 4.90e+00 1dklA c.60.1.2 34000 1ixlA 131 5.22e+00 d.38.1.5 90717 1wc3A 219 5.29e+00 1ab8A 220 5.64e+00 1azsA d.58.29.1 39414 1ewqA 765 6.46e+00 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1kq3A 376 7.39e+00 e.22.1.2 68790 1o70A 324 8.18e+00 b.118.1.1,b.118.1.1 81115,81116 1qx4A 274 8.80e+00 b.43.4.2,c.25.1.1 104624,104625 1vdkA 466 8.92e+00 a.127.1.1 100561 1d0iA 156 9.03e+00 2dhqA c.23.13.1 31383 1dkqA 410 9.48e+00 1dklA c.60.1.2 33998 1mkiA 330 9.63e+00 e.3.1.2 84994 2acfA 182 1.02e+01 1j5pA 253 1.04e+01 d.81.1.3,c.2.1.3 71577,83092 1wekA 217 1.05e+01 1mxmA 254 1.08e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1i7pA 274 1.15e+01 b.43.4.2,c.25.1.1 66048,66049 1t6cA 315 1.23e+01 c.55.1.8,c.55.1.8 106558,106559 2aioA 269 1.25e+01 1smlA 269 1.26e+01 1smlA d.157.1.1 42053 1gtzA 156 1.43e+01 c.23.13.1 70539 1nnsA 326 1.45e+01 c.88.1.1 85910 2b61A 377 1.49e+01 1sr8A 298 1.55e+01 e.54.1.1 105959 1o5zA 442 1.59e+01 c.59.1.2,c.72.2.2 92530,92531 1rzhL 281 1.60e+01 f.26.1.1 98164 1kkcA 221 1.61e+01 a.2.11.1,d.44.1.1 68660,68661 1ycoA 279 1.65e+01 1umkA 275 1.67e+01 1u9yA 284 1.84e+01 1ijyA 130 1.93e+01 1ijxA a.141.1.1 62517 2azpA 318 2.00e+01 1t6aA 126 2.46e+01 d.129.8.1 106555 2gjgA 248 2.53e+01 1kvkA 395 2.53e+01 d.14.1.5,d.58.26.3 73060,73061 1gv3A 248 2.58e+01 a.2.11.1,d.44.1.1 70585,70586 1hzdA 272 2.68e+01 c.14.1.3 65969 1iznB 277 2.69e+01 e.43.1.2 83848 1yqfA 203 2.69e+01 1ndh 272 2.71e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1tafB 70 2.77e+01 1tafB a.22.1.3 16482 1dazC 99 2.83e+01 1hvc b.50.1.1 26501 1f2rI 100 3.35e+01 1c9fA d.15.2.1 37641 1itwA 741 3.43e+01 c.77.1.2 76793 1ryiA 382 3.54e+01 1bupA 386 3.72e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1kay 381 3.73e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1k0eA 453 4.11e+01 d.161.1.1 67938 2aneA 125 4.25e+01 1vh5A 148 4.33e+01 d.38.1.5 100642 1bvqA 141 4.55e+01 1bvqA d.38.1.1 38542 1xjvA 294 4.81e+01 1hbnC 248 4.89e+01 1mroC d.58.31.1 60902 1y9wA 140 4.94e+01 1zvpA 133 5.04e+01 1ng4A 390 5.07e+01 c.3.1.2,d.16.1.3 85666,85667 1z5hA 780 5.10e+01 1y791 680 5.28e+01 1q3iA 214 5.36e+01 d.220.1.1 104524 1q15A 503 5.37e+01 c.26.2.1,d.153.1.1 95538,95539 2b0tA 738 5.40e+01 1ug1A 92 5.53e+01 b.34.2.1 99360 4uagA 437 5.54e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1xtqA 177 5.63e+01 1sk4A 163 5.76e+01 d.118.1.1 105664 1wxxA 382 5.76e+01 1lox 662 5.80e+01 1lox a.119.1.2,b.12.1.1 19238,23638 1zbqA 327 5.81e+01 1gz6A 319 5.84e+01 c.2.1.2 76410 1uurA 473 5.90e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1ig8A 486 5.92e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1j1iA 296 6.00e+01 c.69.1.10 83977 1jb9A 316 6.14e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1josA 128 6.14e+01 d.52.7.1 84191 1gg6B 131 6.15e+01 5ptp 1rzuA 485 6.16e+01 c.87.1.8 105140 1lylA 504 6.19e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1ynfA 458 6.21e+01 1h9dB 134 6.31e+01 2jhbA b.54.1.1 60822 1qstA 160 6.31e+01 1yghA d.108.1.1 40804 1vjrA 271 6.41e+01 c.108.1.14 100832 1yphC 131 6.45e+01 1vpgA 192 6.66e+01 1o8bA 219 6.67e+01 c.124.1.4,d.58.40.1 81180,81181 1od3A 168 6.84e+01 b.18.1.10 86825 1wybA 392 6.86e+01 1e1oA 504 6.94e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1pj5A 830 7.08e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1yuwA 554 7.12e+01 1wycA 392 7.24e+01 2audA 257 7.25e+01 1q5dA 419 7.29e+01 a.104.1.1 95891 1prxA 224 7.52e+01 1prxA c.47.1.10 33076 1lo7A 141 7.53e+01 d.38.1.1 74144 1vljA 407 7.71e+01 e.22.1.2 108832 1cl8A 276 7.77e+01 1ckqA c.52.1.1 33230 1hr6B 443 7.79e+01 1be3A d.185.1.1,d.185.1.1 61166,61167 3proC 166 7.81e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1pzgA 331 7.84e+01 c.2.1.5,d.162.1.1 95425,95426 1ru0A 105 8.10e+01 1ukxA 137 8.11e+01 d.20.1.3 107919 1q1rA 431 8.15e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2fsrA 195 8.18e+01 1jc9A 269 8.19e+01 d.171.1.1 66490 1rsy 152 8.22e+01 1rsy b.7.1.2 23192 1wpgA 994 8.24e+01 2b5wA 357 8.24e+01 1b63A 333 8.28e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1r5eA 115 8.30e+01 1lm6A 215 8.43e+01 d.167.1.1 84628 1tdtA 259 8.47e+01 3tdt b.81.1.2 28055 2aliA 158 8.56e+01 1kc6A 257 8.57e+01 c.52.1.19 68419 2bvbA 137 8.73e+01 1xttA 216 8.74e+01 1iujA 106 8.77e+01 d.58.4.5 90701 3tdt 274 8.81e+01 3tdt b.81.1.2 28053 1eulA 994 8.85e+01 1eulA 1tljA 213 8.88e+01 d.282.1.1 107126 1j5yA 187 8.94e+01 a.4.5.1,d.94.2.1 71592,71593 1jf9A 408 8.98e+01 1c0nA c.67.1.3 62931