# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tm0A 350 7.39e-03 d.21.1.3 107147 1gqzA 274 4.03e-02 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 6.15e-02 1bwzA 274 9.25e-02 1bwzA d.21.1.1,d.21.1.1 38337,38338 1w61A 414 2.99e-01 1t6kA 278 3.15e-01 1ym5A 300 5.63e-01 1xubA 298 6.01e-01 1u1wA 298 7.90e-01 2b3nA 159 1.59e+00 1pzgA 331 2.02e+00 c.2.1.5,d.162.1.1 95425,95426 1oe4A 247 2.03e+00 c.18.1.3 86895 1s7jA 262 3.06e+00 d.21.1.2 98647 1wchA 315 5.71e+00 1k6dA 220 5.93e+00 c.124.1.2 72082 2b1xA 470 6.09e+00 1ixlA 131 6.82e+00 d.38.1.5 90717 1souA 194 7.23e+00 c.124.1.6 105858 1lox 662 7.32e+00 1lox a.119.1.2,b.12.1.1 19238,23638 2fp4B 395 7.75e+00 1ac5 483 8.32e+00 1ac5 c.69.1.5 34653 1q6uA 245 8.72e+00 d.26.1.1 95998 1kkoA 413 9.41e+00 c.1.11.2,d.54.1.1 68675,68676 1q6hA 224 9.43e+00 d.26.1.1 95975 1hzdA 272 9.51e+00 c.14.1.3 65969 1w9hA 427 1.20e+01 1nnsA 326 1.25e+01 c.88.1.1 85910 1d0iA 156 1.42e+01 2dhqA c.23.13.1 31383 2b5oA 402 1.46e+01 1zq4A 693 1.53e+01 1umdB 324 1.59e+01 c.36.1.7,c.48.1.2 99600,99601 1o0pA 104 1.65e+01 d.58.7.1 86535 1vjzA 341 1.75e+01 c.1.8.3 100838 1zesA 125 1.93e+01 1qx4A 274 2.02e+01 b.43.4.2,c.25.1.1 104624,104625 1nnxA 109 2.11e+01 b.40.10.1 92013 1zmdA 474 2.12e+01 16pk 415 2.20e+01 16pk c.86.1.1 35454 1o6sB 105 2.26e+01 b.1.6.1 81096 1jj2F 119 2.27e+01 1ffkE d.79.3.1 63091 1uz5A 402 2.30e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1b00A 127 2.73e+01 3chy c.23.1.1 31122 2cc0A 195 2.84e+01 1sdjA 310 2.86e+01 d.21.1.2,d.21.1.2 98807,98808 1eudA 311 3.30e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 1bjt 793 3.31e+01 1bjt e.11.1.1 43249 2avdA 219 3.33e+01 1gtzA 156 3.44e+01 c.23.13.1 70539 1u5kA 244 3.46e+01 2azpA 318 3.50e+01 1oi6A 205 3.53e+01 b.82.1.1 103940 1o59A 355 3.56e+01 b.18.1.22,b.18.1.22 92495,92496 1jhjA 171 3.62e+01 b.18.1.9 66714 2g7zA 282 3.67e+01 1eudB 396 3.67e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 1ep3B 262 3.74e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1rgyA 360 3.75e+01 e.3.1.1 97456 1wdkC 390 3.81e+01 c.95.1.1,c.95.1.1 109258,109259 1s1qA 145 3.84e+01 d.20.1.2 98351 1n1bA 549 3.90e+01 a.102.4.1,a.128.1.3 79799,79800 1e30A 155 4.00e+01 1rcy b.6.1.1 23016 2calA 154 4.05e+01 1ofnA 205 4.13e+01 b.82.1.1 92830 1sr8A 298 4.17e+01 e.54.1.1 105959 1evhA 112 4.24e+01 1evhA b.55.1.4 26997 1uk8A 282 4.26e+01 c.69.1.10 107907 1io7A 368 4.38e+01 1f4tA a.104.1.1 18971 1lqaA 346 4.45e+01 c.1.7.1 84674 2erfA 209 4.48e+01 1qyaA 307 4.50e+01 d.21.1.2,d.21.1.2 104653,104654 2dfkA 402 4.50e+01 1k8kE 178 4.57e+01 a.148.1.1 68311 1g55A 343 4.58e+01 1g55A c.66.1.26 34247 1ni9A 338 4.62e+01 e.7.1.2 85739 1gvfA 286 4.66e+01 c.1.10.2 70599 1ass 159 4.74e+01 1a6dA c.8.5.2 30818 1wvcA 259 4.74e+01 1z3qA 200 4.81e+01 1n8jA 186 4.95e+01 c.47.1.10 85401 1zu4A 320 5.03e+01 1iupA 282 5.05e+01 c.69.1.10 76815 1wycA 392 5.19e+01 1q6oA 216 5.20e+01 c.1.2.3 95986 2d1yA 256 5.20e+01 1mjfA 281 5.39e+01 c.66.1.17 79198 1wc3A 219 5.57e+01 1szqA 483 5.63e+01 e.44.1.1 99045 1vljA 407 5.82e+01 e.22.1.2 108832 1k28A 584 5.82e+01 b.40.8.1,b.108.1.2,d.2.1.3 68049,68050,68051 1zxxA 319 5.89e+01 1x0rA 249 6.01e+01 1i0sA 169 6.09e+01 1i0rA b.45.1.2 61491 1vknA 351 6.14e+01 c.2.1.3,d.81.1.1 108676,108677 1ia8A 289 6.30e+01 1ia8A d.144.1.7 62112 1umkA 275 6.36e+01 1oahA 519 6.38e+01 a.138.1.3 86736 1ei6A 406 6.50e+01 c.76.1.4 90443 1kktA 511 6.54e+01 a.102.2.1 68687 2cfuA 658 6.58e+01 2fr2A 172 6.62e+01 1mv8A 436 6.66e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1ss4A 153 6.67e+01 d.32.1.6 105976 1php 394 6.89e+01 16pk c.86.1.1 35452 1up8A 598 6.91e+01 a.111.1.2 99710 1s7zA 117 6.93e+01 a.159.3.1 98715 1o04A 500 6.95e+01 c.82.1.1 86508 1j5pA 253 7.01e+01 d.81.1.3,c.2.1.3 71577,83092 2b4rO 345 7.16e+01 1rcy 151 7.24e+01 1rcy b.6.1.1 23018 1rzuA 485 7.33e+01 c.87.1.8 105140 1itwA 741 7.35e+01 c.77.1.2 76793 1rj9A 304 7.51e+01 a.24.13.1,c.37.1.10 97553,97554 1nc5A 373 7.74e+01 a.102.1.6 85548 1i0rA 169 7.80e+01 1i0rA b.45.1.2 61489 1kv8A 216 7.81e+01 c.1.2.3 73054 1ku0A 388 7.88e+01 c.69.1.18 72994 1n3lA 372 7.94e+01 c.26.1.1 79966 1qgrA 876 8.03e+01 1qgrA a.118.1.1 19119 1yqdA 366 8.09e+01 1ni4B 341 8.31e+01 c.36.1.7,c.48.1.2 85729,85730 1fnc 314 8.36e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 2bl9A 238 8.39e+01 1senA 164 8.67e+01 c.47.1.1 105465 1wbpA 397 8.78e+01 2blnA 305 8.97e+01 1i7pA 274 8.99e+01 b.43.4.2,c.25.1.1 66048,66049