Best Alignments for T0301

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1w61A/T0301-1w61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w61A/T0301-1w61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3565e-031.03e-29
1u1wA/T0301-1u1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u1wA/T0301-1u1wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4130e-034.77e-27
1tm0A/T0301-1tm0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tm0A/T0301-1tm0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9887e-031.75e-22 d.21.1.3
2gkeA/T0301-2gkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gkeA/T0301-2gkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1038e-031.42e-24
1xubA/T0301-1xubA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xubA/T0301-1xubA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.0615e-039.46e-26
1gqzA/T0301-1gqzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gqzA/T0301-1gqzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.7509e-032.86e-25 d.21.1.1
d.21.1.1
1t6kA/T0301-1t6kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t6kA/T0301-1t6kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9456e-022.74e-21
1ym5A/T0301-1ym5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ym5A/T0301-1ym5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.9370e-021.90e-25
2azpA/T0301-2azpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2azpA/T0301-2azpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2643e-011.29e-24
1sdjA/T0301-1sdjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sdjA/T0301-1sdjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1403e+001.31e-19 d.21.1.2
d.21.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001