# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w61A 414 1.19e-02 2gkeA 274 6.09e-02 1gqzA 274 6.12e-02 d.21.1.1,d.21.1.1 83311,83312 1xubA 298 8.04e-02 1o17A 345 3.49e-01 a.46.2.1,c.27.1.1 80765,80766 1dp4A 435 9.22e-01 1dp4A c.93.1.1 35710 1ym5A 300 9.28e-01 2b3nA 159 9.35e-01 1dkmA 410 1.20e+00 1dklA c.60.1.2 34000 1dkqA 410 1.26e+00 1dklA c.60.1.2 33998 1ixlA 131 1.44e+00 d.38.1.5 90717 1nkqA 259 1.96e+00 d.177.1.1 103862 1g5cA 170 2.42e+00 1g5cA c.53.2.1 60264 1ycoA 279 2.63e+00 1vdkA 466 2.82e+00 a.127.1.1 100561 1mxmA 254 2.92e+00 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1p3dA 475 3.53e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2azpA 318 3.70e+00 1nnsA 326 3.88e+00 c.88.1.1 85910 1ab8A 220 3.96e+00 1azsA d.58.29.1 39414 1j1iA 296 4.21e+00 c.69.1.10 83977 1sr8A 298 4.21e+00 e.54.1.1 105959 1bupA 386 4.53e+00 1ba1 c.55.1.1,c.55.1.1 33377,33378 1z5hA 780 4.64e+00 1wc3A 219 6.14e+00 1oe4A 247 6.48e+00 c.18.1.3 86895 1wekA 217 8.92e+00 1dgfA 497 9.50e+00 1cf9A e.5.1.1 42782 1qstA 160 9.76e+00 1yghA d.108.1.1 40804 1xttA 216 9.93e+00 2aliA 158 1.23e+01 1kq3A 376 1.35e+01 e.22.1.2 68790 2aioA 269 1.36e+01 1z54A 132 1.40e+01 1u9yA 284 1.46e+01 1jf9A 408 1.48e+01 1c0nA c.67.1.3 62931 1rzhL 281 1.54e+01 f.26.1.1 98164 2a8yA 270 1.58e+01 4uagA 437 1.58e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1qx4A 274 1.65e+01 b.43.4.2,c.25.1.1 104624,104625 1r2rA 248 1.69e+01 c.1.1.1 96875 1vpbA 451 1.73e+01 1jc9A 269 1.83e+01 d.171.1.1 66490 1k8kD 300 1.98e+01 d.198.2.1,d.198.2.1 68309,68310 1xtqA 177 1.98e+01 2b61A 377 2.05e+01 3tdt 274 2.36e+01 3tdt b.81.1.2 28053 1sg4A 260 2.39e+01 2h0bA 184 2.42e+01 1kr7A 110 2.51e+01 a.1.1.4 72890 1hzdA 272 2.58e+01 c.14.1.3 65969 1vh5A 148 2.58e+01 d.38.1.5 100642 1sziA 247 2.62e+01 a.24.23.1 106159 1wtaA 275 2.63e+01 1vquA 374 2.69e+01 2a35A 215 2.77e+01 1b93A 152 2.78e+01 1b93A c.24.1.2 31507 1f08A 148 2.87e+01 1f08A d.89.1.2 59564 1khdA 345 3.00e+01 a.46.2.1,c.27.1.1 77400,77401 1zvtA 256 3.09e+01 2b5wA 357 3.09e+01 1w77A 228 3.14e+01 1ryiA 382 3.18e+01 2ga9D 469 3.20e+01 1h9dB 134 3.23e+01 2jhbA b.54.1.1 60822 1a0cA 438 3.23e+01 1a0cA c.1.15.3 29529 1sg6A 393 3.27e+01 e.22.1.1 105522 1wxxA 382 3.29e+01 1t6cA 315 3.39e+01 c.55.1.8,c.55.1.8 106558,106559 2bgkA 278 3.40e+01 2a74A 643 3.45e+01 1r44A 202 3.50e+01 d.65.1.4 104787 1l5oA 356 3.52e+01 c.39.1.1 77711 1o7nA 449 3.57e+01 b.33.1.2,d.129.3.3 81162,81163 1lo7A 141 3.67e+01 d.38.1.1 74144 1l0wA 580 3.67e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 2hrvA 142 3.87e+01 2hrvA b.47.1.4 26429 2aneA 125 3.90e+01 1mqvA 125 4.05e+01 a.24.3.2 79415 1y791 680 4.18e+01 1sk4A 163 4.18e+01 d.118.1.1 105664 1zkiA 133 4.23e+01 1oruA 195 4.29e+01 b.58.1.2 93464 1ubkL 534 4.38e+01 e.18.1.1 88422 2fs2A 151 4.40e+01 1gteA 1025 4.41e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1wuiL 534 4.50e+01 1y8qA 346 4.54e+01 1yliA 153 4.58e+01 1pjcA 361 4.64e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1azsA 220 4.64e+01 1azsA d.58.29.1 39416 1giqA 413 4.67e+01 d.166.1.1,d.166.1.1 76224,76225 1jihA 531 4.68e+01 d.240.1.1,e.8.1.7 90374,90375 1umkA 275 4.75e+01 2fvhA 120 4.80e+01 1on3A 523 4.88e+01 c.14.1.4,c.14.1.4 87107,87108 1vqoQ 96 5.02e+01 1rl0A 255 5.16e+01 1m7sA 484 5.20e+01 e.5.1.1 74574 1qjtA 99 5.27e+01 1eh2 a.39.1.6 17335 1alu 186 5.33e+01 1alu a.26.1.1 16826 1iznB 277 5.35e+01 e.43.1.2 83848 2bs3A 656 5.38e+01 1rzuA 485 5.47e+01 c.87.1.8 105140 1fcdA 401 5.52e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1evhA 112 5.56e+01 1evhA b.55.1.4 26997 2gjgA 248 5.69e+01 2av4A 162 5.78e+01 1uf3A 228 5.80e+01 d.159.1.6 99317 1qwlA 505 6.05e+01 e.5.1.1 96483 1z94A 147 6.09e+01 1dwkA 156 6.11e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 2b7kA 200 6.24e+01 1ouwA 152 6.37e+01 b.77.3.1 93571 1ecfA 504 6.42e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1yphC 131 6.45e+01 2gdzA 267 6.47e+01 1u0kA 288 6.47e+01 d.21.1.2,d.21.1.2 107547,107548 1gtzA 156 6.60e+01 c.23.13.1 70539 1k0eA 453 6.71e+01 d.161.1.1 67938 1tueB 218 6.72e+01 b.91.1.1 107324 1t13A 158 6.75e+01 1hbnC 248 6.81e+01 1mroC d.58.31.1 60902 1lshA 1056 6.85e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1ry6A 360 6.97e+01 c.37.1.9 98090 2f4pA 147 7.09e+01 1fs5A 266 7.19e+01 c.124.1.1 65044 1xu9A 286 7.26e+01 1qz8A 113 7.26e+01 b.140.1.1 96619 1f3uA 118 7.34e+01 1f3uA b.65.1.1 27521 1e6uA 321 7.34e+01 1bsvA c.2.1.2 29805 1srqA 341 7.37e+01 e.55.1.1 105967 1r5eA 115 7.37e+01 1prxA 224 7.38e+01 1prxA c.47.1.10 33076 1cghA 224 7.43e+01 1a7s b.47.1.2 26290 1q15A 503 7.50e+01 c.26.2.1,d.153.1.1 95538,95539 1ru0A 105 7.54e+01 1xhkA 187 7.57e+01 1wznA 252 7.63e+01 1zwzA 126 7.65e+01 1izmA 184 7.66e+01 a.199.1.1 90725 1zcjA 463 7.69e+01 1jx4A 352 7.74e+01 d.240.1.1,e.8.1.7 90378,90379 1sy7A 715 7.76e+01 2dbbA 151 7.78e+01 1ng2A 193 7.93e+01 b.34.2.1,b.34.2.1 85660,85661 1u55A 188 7.98e+01 d.278.1.1 107677 1pfsA 78 8.05e+01 1pfsA b.40.4.7 25391 1mtpA 323 8.10e+01 e.1.1.1 85107 2cxcA 144 8.12e+01 1qwnA 1045 8.21e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1p80A 753 8.28e+01 c.23.16.3,e.5.1.1 94337,94338 2b1xA 470 8.30e+01 2cx7A 130 8.30e+01 1s4bP 674 8.35e+01 d.92.1.5 105252 1kvkA 395 8.39e+01 d.14.1.5,d.58.26.3 73060,73061 830cA 168 8.52e+01 1ck7A d.92.1.11 40400 1vi6A 208 8.54e+01 c.23.15.1 100736 1tafB 70 8.57e+01 1tafB a.22.1.3 16482 1mnaA 298 8.59e+01 c.69.1.22 79322 2bw8A 227 8.61e+01 1wudA 89 8.70e+01 1r3sA 367 8.70e+01 c.1.22.1 96963 1qfgA 725 8.79e+01 1by5A f.4.3.3 43803 2b0tA 738 8.86e+01 1zbqA 327 8.89e+01 2cy2A 174 8.92e+01 1w19A 160 8.93e+01