# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 2.39e-02 1gqzA 274 2.69e-02 d.21.1.1,d.21.1.1 83311,83312 1w61A 414 9.72e-02 1xubA 298 2.01e-01 1ixlA 131 3.37e-01 d.38.1.5 90717 1ym5A 300 8.22e-01 2b3nA 159 1.29e+00 1kkoA 413 1.75e+00 c.1.11.2,d.54.1.1 68675,68676 1nnxA 109 1.92e+00 b.40.10.1 92013 1qx4A 274 1.97e+00 b.43.4.2,c.25.1.1 104624,104625 1pgyA 47 2.75e+00 a.5.2.1 94696 2gsq 202 2.84e+00 1pd21 a.45.1.1,c.47.1.5 17715,33009 2bsxA 253 2.89e+00 1pzgA 331 3.18e+00 c.2.1.5,d.162.1.1 95425,95426 2azpA 318 3.93e+00 1gtzA 156 4.63e+00 c.23.13.1 70539 2cxcA 144 4.88e+00 1oe4A 247 5.39e+00 c.18.1.3 86895 1evhA 112 7.15e+00 1evhA b.55.1.4 26997 2aifA 135 7.79e+00 1umkA 275 8.04e+00 1g55A 343 8.11e+00 1g55A c.66.1.26 34247 1qd1A 325 8.11e+00 1qd1A d.58.34.1,d.58.34.1 39493,39494 1wtaA 275 8.48e+00 1dnv 437 9.79e+00 1dnv b.121.5.3 23332 2h0bA 184 1.06e+01 1q4gA 553 1.11e+01 a.93.1.2,g.3.11.1 95789,95790 1lqaA 346 1.15e+01 c.1.7.1 84674 1sr8A 298 1.19e+01 e.54.1.1 105959 2bvbA 137 1.22e+01 2avdA 219 1.39e+01 1yp2A 451 1.47e+01 1pbuA 162 1.51e+01 d.58.46.1 88030 1je5A 206 1.51e+01 1je5A b.40.4.7 62909 1vljA 407 1.52e+01 e.22.1.2 108832 1snzA 344 1.58e+01 b.30.5.4 98930 1pbyA 489 1.60e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1ycoA 279 1.70e+01 1sdjA 310 1.72e+01 d.21.1.2,d.21.1.2 98807,98808 1q6uA 245 1.74e+01 d.26.1.1 95998 1nscA 390 1.79e+01 2qwc b.68.1.1 27591 2gjgA 248 1.89e+01 1oi6A 205 1.89e+01 b.82.1.1 103940 1o6sB 105 1.90e+01 b.1.6.1 81096 1izmA 184 1.94e+01 a.199.1.1 90725 1ep3B 262 1.96e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1x54A 434 2.01e+01 2d13A 227 2.08e+01 1q5zA 177 2.12e+01 a.196.1.1 95954 1bxyA 60 2.25e+01 1bxyA d.59.1.1 39525 1wc3A 219 2.26e+01 1nnsA 326 2.28e+01 c.88.1.1 85910 1wchA 315 2.30e+01 1s5jA 847 2.38e+01 1s12A 94 2.44e+01 1ogiA 303 2.46e+01 b.43.4.2,c.25.1.1 92914,92915 1sknP 92 2.50e+01 1sknP a.37.1.1 17127 1qipA 183 2.57e+01 1qipA d.32.1.1 38470 1rq2A 382 2.68e+01 c.32.1.1,d.79.2.1 105048,105049 1kqqA 139 2.69e+01 a.4.3.1 72885 1hx0A 496 2.78e+01 b.71.1.1,c.1.8.1 61346,61347 1a2zA 220 2.82e+01 1a2zA c.56.4.1 33794 1uwkA 557 2.97e+01 e.51.1.1 108065 2fnaA 357 3.01e+01 1b56 135 3.10e+01 1hmt b.60.1.2 27183 1guzA 310 3.17e+01 c.2.1.5,d.162.1.1 65586,65587 1j5pA 253 3.20e+01 d.81.1.3,c.2.1.3 71577,83092 1f6fA 199 3.28e+01 1f6fA a.26.1.1 16839 1othA 321 3.29e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1z41A 338 3.29e+01 1c4rA 182 3.40e+01 1c4rA b.29.1.4 24229 1zwzA 126 3.40e+01 1y8tA 324 3.47e+01 2glzA 153 3.51e+01 1wy0A 342 3.53e+01 1wudA 89 3.56e+01 1tzfA 259 3.71e+01 c.68.1.13 107476 1sziA 247 3.73e+01 a.24.23.1 106159 1bx1A 314 3.81e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1uz5A 402 3.86e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1esc 306 3.91e+01 1esc c.23.10.1 31334 1p3dA 475 3.93e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1jhjA 171 3.97e+01 b.18.1.9 66714 1mpxA 615 4.13e+01 b.18.1.13,c.69.1.21 85041,85042 1hg8A 349 4.17e+01 b.80.1.3 65830 1xizA 159 4.18e+01 1xp8A 366 4.20e+01 1uebA 184 4.25e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1pvvA 315 4.29e+01 c.78.1.1,c.78.1.1 95190,95191 1kpf 126 4.35e+01 1kpf d.13.1.1 37507 2bl9A 238 4.38e+01 2a8eA 220 4.39e+01 1wy1A 172 4.54e+01 1vqoW 154 4.57e+01 1m6sA 347 4.83e+01 c.67.1.1 78701 2b1xA 470 4.85e+01 1vkkA 154 4.87e+01 d.109.1.2 108669 1nf2A 268 4.91e+01 c.108.1.10 91849 1pfsA 78 5.00e+01 1pfsA b.40.4.7 25391 1mqvA 125 5.00e+01 a.24.3.2 79415 1gdeA 389 5.00e+01 c.67.1.1 60456 2ab0A 205 5.05e+01 16pk 415 5.13e+01 16pk c.86.1.1 35454 1u67A 600 5.17e+01 a.93.1.2,g.3.11.1 107697,107698 1zmdA 474 5.18e+01 1zvnA 99 5.24e+01 1w5qA 337 5.26e+01 1r69 69 5.29e+01 1r69 a.35.1.2 17028 1jogA 146 5.33e+01 a.24.16.2 77142 1kamA 194 5.39e+01 c.26.1.3 72254 1r44A 202 5.43e+01 d.65.1.4 104787 1jfmA 174 5.48e+01 d.19.1.1 66640 1rreA 200 5.50e+01 d.14.1.10 97791 1xjvA 294 5.61e+01 1m32A 366 5.64e+01 c.67.1.3 78508 2giyA 191 5.66e+01 2fueA 262 5.92e+01 2lhb 149 5.94e+01 2fal a.1.1.2 15597 1oi7A 288 6.01e+01 c.2.1.8,c.23.4.1 87049,87050 1rsy 152 6.09e+01 1rsy b.7.1.2 23192 1kkhA 317 6.12e+01 d.14.1.5,d.58.26.3 72645,72646 1gvhA 396 6.17e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1ja9A 274 6.19e+01 c.2.1.2 62817 1z54A 132 6.31e+01 1nulA 152 6.41e+01 1nulA c.61.1.1 34011 1m40A 263 6.47e+01 e.3.1.1 74437 1n1bA 549 6.70e+01 a.102.4.1,a.128.1.3 79799,79800 1i0rA 169 6.71e+01 1i0rA b.45.1.2 61489 1ryiA 382 6.86e+01 1pzsA 208 6.87e+01 b.1.8.1 104397 2fztA 79 6.94e+01 2gpiA 91 6.95e+01 2g09A 297 7.02e+01 2ao9A 155 7.04e+01 1jb9A 316 7.06e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 2aneA 125 7.14e+01 1y8aA 332 7.17e+01 1mkmA 249 7.21e+01 a.4.5.33,d.110.2.2 79242,79243 1vr3A 191 7.39e+01 1orjA 130 7.40e+01 a.24.19.1 93456 1v1aA 309 7.42e+01 c.72.1.1 100249 1quuA 250 7.53e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1jf9A 408 7.59e+01 1c0nA c.67.1.3 62931 2b0tA 738 7.71e+01 2a2rA 210 7.87e+01 1svvA 359 8.01e+01 c.67.1.1 106054 2bhoA 130 8.08e+01 1s2xA 206 8.09e+01 a.47.3.1 105229 1xiwB 79 8.17e+01 1kte 105 8.33e+01 1kte c.47.1.1 32771 1lyqA 104 8.49e+01 b.1.18.17 78302 1ash 150 8.53e+01 1ash a.1.1.2 15622 1vqoT 120 8.61e+01 1yrbA 262 8.61e+01 1z96A 40 8.82e+01 2gp4A 628 8.83e+01 1ouwA 152 8.84e+01 b.77.3.1 93571 1jm0A 50 8.88e+01 k.8.1.1 66870 1w8oA 601 8.98e+01