# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gkeA 274 5.04e-02 1gqzA 274 6.00e-02 d.21.1.1,d.21.1.1 83311,83312 1xubA 298 6.50e-02 1w61A 414 8.09e-02 1ym5A 300 8.33e-01 1ixlA 131 1.76e+00 d.38.1.5 90717 1dkmA 410 2.48e+00 1dklA c.60.1.2 34000 1oe4A 247 3.00e+00 c.18.1.3 86895 2b3nA 159 3.37e+00 1o17A 345 3.95e+00 a.46.2.1,c.27.1.1 80765,80766 1vdkA 466 4.54e+00 a.127.1.1 100561 1dkqA 410 4.66e+00 1dklA c.60.1.2 33998 1dp4A 435 5.00e+00 1dp4A c.93.1.1 35710 1ab8A 220 5.06e+00 1azsA d.58.29.1 39414 1p3dA 475 5.71e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2acfA 182 6.33e+00 1ycoA 279 8.36e+00 1qx4A 274 9.12e+00 b.43.4.2,c.25.1.1 104624,104625 2h0bA 184 9.35e+00 1mxmA 254 9.46e+00 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1mkiA 330 9.69e+00 e.3.1.2 84994 1wc3A 219 9.79e+00 1dgfA 497 1.07e+01 1cf9A e.5.1.1 42782 1qstA 160 1.21e+01 1yghA d.108.1.1 40804 2b61A 377 1.23e+01 2aioA 269 1.23e+01 2azpA 318 1.28e+01 1bupA 386 1.31e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1rzhL 281 1.35e+01 f.26.1.1 98164 1sr8A 298 1.56e+01 e.54.1.1 105959 1yqfA 203 1.57e+01 1gtzA 156 1.59e+01 c.23.13.1 70539 1u9yA 284 1.82e+01 1kvkA 395 1.97e+01 d.14.1.5,d.58.26.3 73060,73061 1k0eA 453 2.13e+01 d.161.1.1 67938 1o5zA 442 2.17e+01 c.59.1.2,c.72.2.2 92530,92531 1wekA 217 2.32e+01 1h9dB 134 2.37e+01 2jhbA b.54.1.1 60822 1hzdA 272 2.39e+01 c.14.1.3 65969 1umkA 275 2.40e+01 1iznB 277 2.50e+01 e.43.1.2 83848 2gjgA 248 2.52e+01 1m7sA 484 2.62e+01 e.5.1.1 74574 1z5hA 780 2.64e+01 1xtqA 177 2.66e+01 1kq3A 376 2.73e+01 e.22.1.2 68790 3proC 166 2.74e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1t6cA 315 2.74e+01 c.55.1.8,c.55.1.8 106558,106559 1aa6 715 2.79e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1nnsA 326 2.85e+01 c.88.1.1 85910 2iv2X 715 2.98e+01 4uagA 437 3.05e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1wycA 392 3.14e+01 1wxxA 382 3.25e+01 1vh5A 148 3.50e+01 d.38.1.5 100642 2ga9D 469 3.56e+01 1z54A 132 3.56e+01 1wtaA 275 3.56e+01 1j1iA 296 3.60e+01 c.69.1.10 83977 1ijyA 130 3.82e+01 1ijxA a.141.1.1 62517 1tafB 70 3.85e+01 1tafB a.22.1.3 16482 1ryiA 382 3.89e+01 1z94A 147 4.12e+01 1hbnC 248 4.12e+01 1mroC d.58.31.1 60902 1k8kD 300 4.40e+01 d.198.2.1,d.198.2.1 68309,68310 1prxA 224 4.50e+01 1prxA c.47.1.10 33076 1y9wA 140 4.70e+01 1rzuA 485 4.79e+01 c.87.1.8 105140 2b0tA 738 4.86e+01 2b5wA 357 4.86e+01 1q15A 503 4.86e+01 c.26.2.1,d.153.1.1 95538,95539 1xhkA 187 4.94e+01 1r9fA 136 5.00e+01 d.255.1.1 97257 2aneA 125 5.00e+01 1g5cA 170 5.04e+01 1g5cA c.53.2.1 60264 3tdt 274 5.07e+01 3tdt b.81.1.2 28053 1zvpA 133 5.12e+01 1y791 680 5.27e+01 1xjvA 294 5.33e+01 1cl8A 276 5.36e+01 1ckqA c.52.1.1 33230 1ig8A 486 5.43e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1k24A 253 5.58e+01 f.4.4.2 72002 1sg6A 393 5.60e+01 e.22.1.1 105522 1zkiA 133 5.64e+01 1q5dA 419 5.65e+01 a.104.1.1 95891 1rl0A 255 5.77e+01 1josA 128 5.77e+01 d.52.7.1 84191 2audA 257 5.82e+01 1b7yA 350 5.98e+01 1pysA d.104.1.1 40776 1uwkA 557 5.98e+01 e.51.1.1 108065 2f23A 156 6.05e+01 1nscA 390 6.18e+01 2qwc b.68.1.1 27591 1q1rA 431 6.24e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2a6hC 1119 6.26e+01 1vpbA 451 6.26e+01 1wosA 364 6.28e+01 b.44.2.1,d.250.1.1 109468,109469 2fsrA 195 6.28e+01 1v33A 366 6.30e+01 d.264.1.1 100278 1giqA 413 6.32e+01 d.166.1.1,d.166.1.1 76224,76225 1sk4A 163 6.40e+01 d.118.1.1 105664 1yphC 131 6.44e+01 1jf9A 408 6.52e+01 1c0nA c.67.1.3 62931 1qwlA 505 6.56e+01 e.5.1.1 96483 1jb9A 316 6.56e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1e4mM 501 6.77e+01 1e70M c.1.8.4 59226 1jihA 531 6.87e+01 d.240.1.1,e.8.1.7 90374,90375 1vqoQ 96 7.09e+01 1fi4A 416 7.23e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 2hrvA 142 7.27e+01 2hrvA b.47.1.4 26429 2a8yA 270 7.28e+01 1b63A 333 7.51e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 2av4A 162 7.53e+01 1wduA 245 7.53e+01 d.151.1.1 109286 1r5eA 115 7.59e+01 1pjcA 361 7.60e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1gmuA 143 7.61e+01 b.107.1.1,d.58.38.1 65335,65336 1t6aA 126 7.62e+01 d.129.8.1 106555 2gfgA 193 7.68e+01 1wq3A 322 7.76e+01 1vljA 407 7.80e+01 e.22.1.2 108832 1w77A 228 7.92e+01 1jhjA 171 8.13e+01 b.18.1.9 66714 1ynfA 458 8.15e+01 1ru0A 105 8.38e+01 1v9yA 167 8.46e+01 d.110.3.2 108454 1evhA 112 8.52e+01 1evhA b.55.1.4 26997 1x88A 359 8.56e+01 1od3A 168 8.65e+01 b.18.1.10 86825 1uebA 184 8.66e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1vqzA 341 8.80e+01 1izmA 184 8.82e+01 a.199.1.1 90725 2anuA 255 8.94e+01 2c8mA 262 8.95e+01