# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w61A 414 5.68e-04 2gkeA 274 9.54e-04 1xubA 298 9.88e-04 1gqzA 274 1.44e-03 d.21.1.1,d.21.1.1 83311,83312 1o17A 345 6.52e-02 a.46.2.1,c.27.1.1 80765,80766 1ym5A 300 2.02e-01 1dkmA 410 3.68e-01 1dklA c.60.1.2 34000 1dkqA 410 4.84e-01 1dklA c.60.1.2 33998 2b3nA 159 5.43e-01 1ycoA 279 5.90e-01 1ixlA 131 8.10e-01 d.38.1.5 90717 1bupA 386 8.23e-01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1sr8A 298 9.51e-01 e.54.1.1 105959 1yqfA 203 1.48e+00 1qstA 160 2.14e+00 1yghA d.108.1.1 40804 2azpA 318 2.49e+00 1gtzA 156 2.64e+00 c.23.13.1 70539 1umkA 275 3.47e+00 1vdkA 466 3.60e+00 a.127.1.1 100561 1z54A 132 3.68e+00 1ab8A 220 3.93e+00 1azsA d.58.29.1 39414 1p3dA 475 4.34e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1y9wA 140 4.58e+00 1vi6A 208 4.90e+00 c.23.15.1 100736 1vpbA 451 5.03e+00 1prxA 224 5.22e+00 1prxA c.47.1.10 33076 1oe4A 247 5.27e+00 c.18.1.3 86895 1nnsA 326 5.39e+00 c.88.1.1 85910 1qx4A 274 5.46e+00 b.43.4.2,c.25.1.1 104624,104625 1g5cA 170 5.47e+00 1g5cA c.53.2.1 60264 1giqA 413 5.55e+00 d.166.1.1,d.166.1.1 76224,76225 1wtaA 275 5.61e+00 1xtqA 177 5.77e+00 2b61A 377 6.31e+00 1vquA 374 6.97e+00 1u9yA 284 7.23e+00 1rl0A 255 7.53e+00 3tdt 274 8.58e+00 3tdt b.81.1.2 28053 1y791 680 9.66e+00 1qjtA 99 9.69e+00 1eh2 a.39.1.6 17335 1o7nA 449 1.06e+01 b.33.1.2,d.129.3.3 81162,81163 1khdA 345 1.07e+01 a.46.2.1,c.27.1.1 77400,77401 1nbwA 607 1.09e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1z5hA 780 1.14e+01 1wc3A 219 1.15e+01 1o8bA 219 1.17e+01 c.124.1.4,d.58.40.1 81180,81181 1hzdA 272 1.20e+01 c.14.1.3 65969 2f23A 156 1.21e+01 1jf9A 408 1.30e+01 1c0nA c.67.1.3 62931 1xhkA 187 1.34e+01 1vh5A 148 1.44e+01 d.38.1.5 100642 1mqvA 125 1.52e+01 a.24.3.2 79415 1oruA 195 1.56e+01 b.58.1.2 93464 1od3A 168 1.57e+01 b.18.1.10 86825 2h0bA 184 1.59e+01 1h65A 270 1.61e+01 c.37.1.8 65640 2b0tA 738 1.62e+01 1xttA 216 1.63e+01 1vqoQ 96 1.64e+01 1dmhA 311 1.66e+01 1dmhA b.3.6.1 22633 2aliA 158 1.66e+01 2a8yA 270 1.69e+01 1g0sA 209 1.73e+01 1g0sA d.113.1.1 60187 1dgfA 497 1.76e+01 1cf9A e.5.1.1 42782 1ynfA 458 1.82e+01 1l0wA 580 1.83e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 2gjgA 248 1.83e+01 1dp4A 435 1.86e+01 1dp4A c.93.1.1 35710 1fnnA 389 1.87e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 2b5wA 357 1.92e+01 1ekjA 221 1.92e+01 1ekjB c.53.2.1 33364 1sk4A 163 1.96e+01 d.118.1.1 105664 1sdjA 310 2.00e+01 d.21.1.2,d.21.1.2 98807,98808 1h2eA 207 2.00e+01 c.60.1.1 70857 1uf3A 228 2.04e+01 d.159.1.6 99317 1jb7A 495 2.05e+01 1otcA b.40.4.3,b.40.4.3,b.40.4.3 62836,62837,62838 1tafB 70 2.06e+01 1tafB a.22.1.3 16482 1m2oA 768 2.09e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2acfA 182 2.10e+01 1ryiA 382 2.13e+01 1k0eA 453 2.14e+01 d.161.1.1 67938 1w19A 160 2.21e+01 1q15A 503 2.25e+01 c.26.2.1,d.153.1.1 95538,95539 1q1rA 431 2.32e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1o0iA 138 2.33e+01 d.38.1.5 86532 1rzuA 485 2.36e+01 c.87.1.8 105140 2ghpA 292 2.36e+01 1ogsA 497 2.37e+01 b.71.1.2,c.1.8.3 86997,86998 1gmuA 143 2.39e+01 b.107.1.1,d.58.38.1 65335,65336 1iicA 422 2.41e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 2hrvA 142 2.48e+01 2hrvA b.47.1.4 26429 2dbbA 151 2.53e+01 1srqA 341 2.55e+01 e.55.1.1 105967 1h9dB 134 2.76e+01 2jhbA b.54.1.1 60822 2msbA 115 2.78e+01 1rtm1 d.169.1.1 42355 1mngA 203 2.83e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1zkiA 133 2.83e+01 2fnaA 357 2.88e+01 1kq3A 376 2.91e+01 e.22.1.2 68790 1l5oA 356 2.91e+01 c.39.1.1 77711 2aneA 125 3.05e+01 1hf2A 210 3.05e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1g7sA 594 3.07e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 2an1A 292 3.11e+01 2h4uA 145 3.14e+01 1fs5A 266 3.14e+01 c.124.1.1 65044 1llp 343 3.15e+01 1arv a.93.1.1 18578 2c8mA 262 3.20e+01 2g84A 197 3.32e+01 1lshA 1056 3.32e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1pjcA 361 3.33e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1rwiA 270 3.39e+01 b.68.9.1 97987 1w77A 228 3.40e+01 1ri5A 298 3.41e+01 c.66.1.34 97502 1cl8A 276 3.43e+01 1ckqA c.52.1.1 33230 2cx7A 130 3.46e+01 1yphC 131 3.48e+01 1to6A 371 3.50e+01 c.141.1.1 107170 1zl0A 311 3.51e+01 1tzjA 338 3.63e+01 1mxmA 254 3.65e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 2fs2A 151 3.65e+01 1pyoA 167 3.68e+01 c.17.1.1 95370 2f4pA 147 3.71e+01 1josA 128 3.72e+01 d.52.7.1 84191 2bz6H 254 3.78e+01 1drw 273 3.85e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1tu1A 148 3.90e+01 d.107.1.3 107316 2etvA 346 3.99e+01 1mtpA 323 3.99e+01 e.1.1.1 85107 1r5eA 115 3.99e+01 1lo7A 141 3.99e+01 d.38.1.1 74144 1nscA 390 4.11e+01 2qwc b.68.1.1 27591 1e4mM 501 4.12e+01 1e70M c.1.8.4 59226 1z94A 147 4.13e+01 1ejeA 192 4.33e+01 1ejeA b.45.1.2 25757 1es9A 232 4.34e+01 1wab c.23.10.3 31340 1uebA 184 4.36e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1pfsA 78 4.43e+01 1pfsA b.40.4.7 25391 1ng2A 193 4.45e+01 b.34.2.1,b.34.2.1 85660,85661 1evhA 112 4.46e+01 1evhA b.55.1.4 26997 1zvpA 133 4.47e+01 2g6yA 217 4.47e+01 2cxcA 144 4.50e+01 1q6hA 224 4.54e+01 d.26.1.1 95975 1u7nA 336 4.60e+01 c.77.1.4 107726 1pzsA 208 4.60e+01 b.1.8.1 104397 1zvtA 256 4.61e+01 1i78A 297 4.72e+01 f.4.4.1 66046 1izmA 184 4.74e+01 a.199.1.1 90725 1qwkA 317 4.77e+01 c.1.7.1 96482 2bs3A 656 4.81e+01 1jihA 531 4.82e+01 d.240.1.1,e.8.1.7 90374,90375 1hbnC 248 4.85e+01 1mroC d.58.31.1 60902 1f3uA 118 4.89e+01 1f3uA b.65.1.1 27521 2a2nA 176 4.92e+01 2aieP 203 4.96e+01 1k24A 253 4.98e+01 f.4.4.2 72002 1u55A 188 5.04e+01 d.278.1.1 107677 2aj6A 159 5.06e+01 1qz8A 113 5.06e+01 b.140.1.1 96619 2f8mA 244 5.16e+01 1w8oA 601 5.18e+01 1ze3D 125 5.24e+01 1z4rA 168 5.27e+01 2fvhA 120 5.35e+01 2a9gA 418 5.36e+01 1jb7B 260 5.42e+01 1otcB b.40.4.3 62839 1tq5A 242 5.47e+01 1u24A 337 5.47e+01 1i1nA 226 5.50e+01 c.66.1.7 71102 1zcjA 463 5.50e+01 1ut9A 609 5.54e+01 a.102.1.2,b.1.18.2 99912,99913 1xizA 159 5.54e+01 1sefA 274 5.55e+01 b.82.1.11 105452 1pjxA 314 5.57e+01 b.68.6.1 104167 2af4C 333 5.61e+01 1tcvA 287 5.68e+01 1wleA 501 5.71e+01 2fsjA 346 5.72e+01 1qipA 183 5.75e+01 1qipA d.32.1.1 38470 1sjwA 144 5.76e+01 d.17.4.9 98899 2bw8A 227 5.91e+01 1q1fA 151 5.95e+01 a.1.1.2 104476 1dpgA 485 5.98e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 2aioA 269 5.99e+01 1nh0A 99 5.99e+01 b.50.1.1 91869 1n3lA 372 6.00e+01 c.26.1.1 79966 1bywA 110 6.11e+01 1bywA d.110.3.6 40912 1wdvA 152 6.13e+01 2if1 126 6.18e+01 2if1 d.64.1.1 39547 2d0oA 610 6.20e+01 1g2bA 62 6.20e+01 1tud b.34.2.1 24488 2bm3A 166 6.21e+01 1yc9A 442 6.27e+01 1zh5A 195 6.29e+01 1nowA 507 6.36e+01 c.1.8.6,d.92.2.1 85936,85937 1wekA 217 6.38e+01 2ga9D 469 6.41e+01 2b1xA 470 6.43e+01 1rrmA 386 6.50e+01 e.22.1.2 105081 1sg6A 393 6.51e+01 e.22.1.1 105522 2essA 248 6.53e+01 1r45A 204 6.57e+01 1r44A 202 6.69e+01 d.65.1.4 104787 1cghA 224 6.80e+01 1a7s b.47.1.2 26290 1wxxA 382 6.80e+01 1h8eA 510 6.83e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1wduA 245 6.85e+01 d.151.1.1 109286 2dbsA 90 6.88e+01 1m7sA 484 6.90e+01 e.5.1.1 74574 1k8kE 178 6.93e+01 a.148.1.1 68311 1vl2A 421 7.02e+01 c.26.2.1,d.210.1.1 108708,108709 2f2hA 773 7.05e+01 1yp2A 451 7.07e+01 1lyqA 104 7.12e+01 b.1.18.17 78302 1xqbA 247 7.25e+01 1txvA 452 7.25e+01 1jc9A 269 7.26e+01 d.171.1.1 66490 1eu1A 780 7.28e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1uwkA 557 7.29e+01 e.51.1.1 108065 1ukkA 142 7.32e+01 d.227.1.1 99491 1vqzA 341 7.32e+01 1nmeB 92 7.36e+01 1eq9A 222 7.36e+01 5ptp b.47.1.2 26068 2bmoB 194 7.46e+01 1xjvA 294 7.48e+01 1y8qA 346 7.52e+01 1v9yA 167 7.70e+01 d.110.3.2 108454 1fjgK 129 7.70e+01 1fjfK c.55.4.1 33733 1fc6A 388 7.75e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1hekA 131 7.76e+01 a.61.1.5 65818 2a1kA 233 7.77e+01 1ash 150 7.79e+01 1ash a.1.1.2 15622 1iznB 277 7.85e+01 e.43.1.2 83848 1uy4A 145 7.92e+01 b.18.1.10 108131 2fr2A 172 7.97e+01 1q4gA 553 8.05e+01 a.93.1.2,g.3.11.1 95789,95790 1svdA 473 8.08e+01 1hp1A 516 8.09e+01 d.114.1.1,d.159.1.2 70976,70977 1ycdA 243 8.17e+01 1on3A 523 8.17e+01 c.14.1.4,c.14.1.4 87107,87108 1svy 114 8.21e+01 1svy d.109.1.1 40831 2audA 257 8.21e+01 2es4D 332 8.24e+01 1rsy 152 8.26e+01 1rsy b.7.1.2 23192 2av4A 162 8.36e+01 1w96A 554 8.40e+01 2aeeA 211 8.40e+01 1c96A 753 8.53e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1wudA 89 8.53e+01 1q3iA 214 8.59e+01 d.220.1.1 104524 1oo0A 147 8.67e+01 d.232.1.1 87182 1a8rA 221 8.76e+01 1a8rA d.96.1.1 40587 1rzhL 281 8.78e+01 f.26.1.1 98164 1u5uA 374 8.79e+01 1kqfA 1015 8.80e+01 b.52.2.2,c.81.1.1 72871,72872 1s4bP 674 8.87e+01 d.92.1.5 105252 2fsrA 195 8.93e+01 1xrtA 467 8.93e+01 2ajgA 196 9.00e+01