# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tm0A 350 6.03e-02 d.21.1.3 107147 2gkeA 274 6.87e-02 1gqzA 274 8.15e-02 d.21.1.1,d.21.1.1 83311,83312 1xubA 298 1.30e-01 1u1wA 298 1.41e-01 1bwzA 274 1.50e-01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1w61A 414 1.65e-01 1t6kA 278 3.91e-01 1ym5A 300 6.04e-01 1dp4A 435 2.81e+00 1dp4A c.93.1.1 35710 1azsB 212 3.43e+00 1azsA d.58.29.1 39423 1ixlA 131 3.44e+00 d.38.1.5 90717 1oe4A 247 3.47e+00 c.18.1.3 86895 1wc3A 219 4.56e+00 1ab8A 220 4.75e+00 1azsA d.58.29.1 39414 1dkmA 410 4.89e+00 1dklA c.60.1.2 34000 1p3dA 475 5.27e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1o0pA 104 8.58e+00 d.58.7.1 86535 2b3nA 159 8.73e+00 1dkqA 410 8.73e+00 1dklA c.60.1.2 33998 1o70A 324 8.99e+00 b.118.1.1,b.118.1.1 81115,81116 1o17A 345 9.09e+00 a.46.2.1,c.27.1.1 80765,80766 1mkiA 330 9.19e+00 e.3.1.2 84994 1d0iA 156 9.33e+00 2dhqA c.23.13.1 31383 2aioA 269 9.43e+00 1smlA 269 9.53e+00 1smlA d.157.1.1 42053 2acfA 182 1.02e+01 1vdkA 466 1.09e+01 a.127.1.1 100561 1dgfA 497 1.12e+01 1cf9A e.5.1.1 42782 1ewqA 765 1.30e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1mxmA 254 1.37e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1rzhL 281 1.41e+01 f.26.1.1 98164 1gtzA 156 1.53e+01 c.23.13.1 70539 1sr8A 298 1.84e+01 e.54.1.1 105959 2h0bA 184 1.97e+01 1ycoA 279 2.04e+01 1h9dB 134 2.22e+01 2jhbA b.54.1.1 60822 1kq3A 376 2.28e+01 e.22.1.2 68790 1t6cA 315 2.31e+01 c.55.1.8,c.55.1.8 106558,106559 2gjgA 248 2.34e+01 1wekA 217 2.35e+01 2b61A 377 2.45e+01 1m7sA 484 2.46e+01 e.5.1.1 74574 1yqfA 203 2.56e+01 1o5zA 442 2.67e+01 c.59.1.2,c.72.2.2 92530,92531 2myr 501 2.70e+01 1u9yA 284 2.81e+01 1dazC 99 2.85e+01 1hvc b.50.1.1 26501 1kay 381 2.86e+01 1ba1 c.55.1.1,c.55.1.1 33385,33386 1bupA 386 2.87e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 1k0eA 453 2.98e+01 d.161.1.1 67938 1kvkA 395 3.15e+01 d.14.1.5,d.58.26.3 73060,73061 1gv3A 248 3.17e+01 a.2.11.1,d.44.1.1 70585,70586 1j5pA 253 3.20e+01 d.81.1.3,c.2.1.3 71577,83092 1vh5A 148 3.45e+01 d.38.1.5 100642 1qx4A 274 3.53e+01 b.43.4.2,c.25.1.1 104624,104625 1hzdA 272 3.57e+01 c.14.1.3 65969 1ijyA 130 3.87e+01 1ijxA a.141.1.1 62517 1kkcA 221 3.93e+01 a.2.11.1,d.44.1.1 68660,68661 1qstA 160 3.97e+01 1yghA d.108.1.1 40804 1iznB 277 3.98e+01 e.43.1.2 83848 1xtqA 177 4.03e+01 1wxxA 382 4.05e+01 1wybA 392 4.11e+01 1tafB 70 4.16e+01 1tafB a.22.1.3 16482 1nnsA 326 4.36e+01 c.88.1.1 85910 1ig8A 486 4.55e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1wycA 392 4.56e+01 1z54A 132 4.58e+01 1cl8A 276 4.76e+01 1ckqA c.52.1.1 33230 1i7pA 274 4.76e+01 b.43.4.2,c.25.1.1 66048,66049 2anuA 255 4.82e+01 1zvpA 133 5.09e+01 1q15A 503 5.11e+01 c.26.2.1,d.153.1.1 95538,95539 1f2rI 100 5.14e+01 1c9fA d.15.2.1 37641 1pjcA 361 5.20e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1bvqA 141 5.22e+01 1bvqA d.38.1.1 38542 2audA 257 5.22e+01 2ga9D 469 5.25e+01 1kc6A 257 5.41e+01 c.52.1.19 68419 4uagA 437 5.68e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1ndh 272 5.68e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1t6aA 126 5.76e+01 d.129.8.1 106555 2b0tA 738 5.94e+01 1e4mM 501 6.12e+01 1e70M c.1.8.4 59226 1rzuA 485 6.17e+01 c.87.1.8 105140 1uurA 473 6.27e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1ryiA 382 6.31e+01 1m2oA 768 6.34e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1xhvA 257 6.40e+01 c.52.1.19 109597 1gmuA 143 6.43e+01 b.107.1.1,d.58.38.1 65335,65336 1q3iA 214 6.59e+01 d.220.1.1 104524 1zbqA 327 6.61e+01 1j1iA 296 6.69e+01 c.69.1.10 83977 1htyA 1015 6.71e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1itwA 741 6.79e+01 c.77.1.2 76793 1q1rA 431 6.82e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2b6eA 146 6.91e+01 1umkA 275 6.93e+01 2aneA 125 6.96e+01 1o0iA 138 6.97e+01 d.38.1.5 86532 1z5hA 780 7.21e+01 1xttA 216 7.59e+01 1snzA 344 7.66e+01 b.30.5.4 98930 1v9yA 167 7.77e+01 d.110.3.2 108454 1hbnC 248 7.85e+01 1mroC d.58.31.1 60902 2b5wA 357 7.86e+01 1pj5A 830 7.94e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1y791 680 7.95e+01 1xjvA 294 7.98e+01 1yuwA 554 8.02e+01 1y9wA 140 8.02e+01 1prxA 224 8.24e+01 1prxA c.47.1.10 33076 1b7yA 350 8.24e+01 1pysA d.104.1.1 40776 1jb9A 316 8.28e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1lm6A 215 8.30e+01 d.167.1.1 84628 1vjrA 271 8.34e+01 c.108.1.14 100832 1qwlA 505 8.40e+01 e.5.1.1 96483 1a0rP 245 8.41e+01 1b9yC c.47.1.6 33054 1gz6A 319 8.47e+01 c.2.1.2 76410 1lo7A 141 8.51e+01 d.38.1.1 74144 2bvyA 475 8.64e+01 1pysA 350 8.66e+01 1pysA d.104.1.1 40775 1rsy 152 8.72e+01 1rsy b.7.1.2 23192 1hbzA 498 8.77e+01 1cf9A e.5.1.1 60937 1j5yA 187 8.84e+01 a.4.5.1,d.94.2.1 71592,71593 1od3A 168 8.87e+01 b.18.1.10 86825