# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tm0A 350 6.48e-03 d.21.1.3 107147 1gqzA 274 4.18e-02 d.21.1.1,d.21.1.1 83311,83312 2gkeA 274 7.71e-02 1bwzA 274 1.02e-01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1t6kA 278 3.96e-01 1w61A 414 4.48e-01 1ym5A 300 5.58e-01 1xubA 298 7.47e-01 1u1wA 298 1.09e+00 1oe4A 247 1.74e+00 c.18.1.3 86895 1pzgA 331 2.31e+00 c.2.1.5,d.162.1.1 95425,95426 2b3nA 159 2.58e+00 1lox 662 3.28e+00 1lox a.119.1.2,b.12.1.1 19238,23638 2bduA 297 3.69e+00 1k6dA 220 4.43e+00 c.124.1.2 72082 1wchA 315 4.78e+00 1s7jA 262 4.82e+00 d.21.1.2 98647 1zq4A 693 4.96e+00 1kkoA 413 5.17e+00 c.1.11.2,d.54.1.1 68675,68676 2g09A 297 6.42e+00 1souA 194 6.45e+00 c.124.1.6 105858 2b1xA 470 7.31e+00 1ixlA 131 7.90e+00 d.38.1.5 90717 2fp4B 395 8.54e+00 1ac5 483 8.88e+00 1ac5 c.69.1.5 34653 1nnsA 326 1.12e+01 c.88.1.1 85910 1hzdA 272 1.19e+01 c.14.1.3 65969 1w9hA 427 1.21e+01 1q6uA 245 1.30e+01 d.26.1.1 95998 1umdB 324 1.54e+01 c.36.1.7,c.48.1.2 99600,99601 1q6hA 224 1.60e+01 d.26.1.1 95975 1vjzA 341 1.65e+01 c.1.8.3 100838 1uz5A 402 1.98e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1ep3B 262 2.09e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1mjfA 281 2.09e+01 c.66.1.17 79198 1d0iA 156 2.20e+01 2dhqA c.23.13.1 31383 1jj2F 119 2.44e+01 1ffkE d.79.3.1 63091 1zmdA 474 2.49e+01 1zesA 125 2.54e+01 16pk 415 2.69e+01 16pk c.86.1.1 35454 1n1bA 549 3.08e+01 a.102.4.1,a.128.1.3 79799,79800 1o04A 500 3.17e+01 c.82.1.1 86508 1qx4A 274 3.22e+01 b.43.4.2,c.25.1.1 104624,104625 1sdjA 310 3.25e+01 d.21.1.2,d.21.1.2 98807,98808 1sr8A 298 3.30e+01 e.54.1.1 105959 1z3qA 200 3.31e+01 2b5oA 402 3.34e+01 1nnxA 109 3.34e+01 b.40.10.1 92013 2g7zA 282 3.41e+01 1o6sB 105 3.53e+01 b.1.6.1 81096 1b00A 127 3.55e+01 3chy c.23.1.1 31122 1dgfA 497 3.65e+01 1cf9A e.5.1.1 42782 1bjt 793 3.66e+01 1bjt e.11.1.1 43249 1oi6A 205 3.77e+01 b.82.1.1 103940 2d1yA 256 3.78e+01 1hdfA 102 3.82e+01 1ag4 b.11.1.1 23627 1io7A 368 3.96e+01 1f4tA a.104.1.1 18971 1gvfA 286 4.01e+01 c.1.10.2 70599 1nc5A 373 4.18e+01 a.102.1.6 85548 2dfkA 402 4.19e+01 1eudB 396 4.22e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 2azpA 318 4.22e+01 1ofnA 205 4.24e+01 b.82.1.1 92830 1o0pA 104 4.44e+01 d.58.7.1 86535 1ni4B 341 4.50e+01 c.36.1.7,c.48.1.2 85729,85730 1jhjA 171 4.55e+01 b.18.1.9 66714 2b4rO 345 4.56e+01 2avdA 219 4.65e+01 1vi9A 299 4.66e+01 c.72.1.5 100750 1rgyA 360 4.72e+01 e.3.1.1 97456 1vr3A 191 4.79e+01 1wdkC 390 4.80e+01 c.95.1.1,c.95.1.1 109258,109259 1o59A 355 4.89e+01 b.18.1.22,b.18.1.22 92495,92496 1cc1S 283 4.90e+01 2frvA e.19.1.1 43313 1fa0A 537 4.94e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1gmiA 136 5.05e+01 b.7.1.1 65309 1vknA 351 5.17e+01 c.2.1.3,d.81.1.1 108676,108677 1wycA 392 5.19e+01 1zu4A 320 5.19e+01 1n8jA 186 5.35e+01 c.47.1.10 85401 1evhA 112 5.37e+01 1evhA b.55.1.4 26997 1k8kE 178 5.38e+01 a.148.1.1 68311 1qyaA 307 5.57e+01 d.21.1.2,d.21.1.2 104653,104654 1u5kA 244 5.59e+01 1lqaA 346 5.66e+01 c.1.7.1 84674 1s1qA 145 5.68e+01 d.20.1.2 98351 1gtzA 156 5.81e+01 c.23.13.1 70539 1k28A 584 5.91e+01 b.40.8.1,b.108.1.2,d.2.1.3 68049,68050,68051 2cc0A 195 5.99e+01 1itwA 741 6.22e+01 c.77.1.2 76793 1s7zA 117 6.23e+01 a.159.3.1 98715 2calA 154 6.27e+01 1e30A 155 6.29e+01 1rcy b.6.1.1 23016 1i0sA 169 6.31e+01 1i0rA b.45.1.2 61491 1ss4A 153 6.32e+01 d.32.1.6 105976 1ass 159 6.43e+01 1a6dA c.8.5.2 30818 1ei6A 406 6.48e+01 c.76.1.4 90443 1wc3A 219 6.52e+01 1eudA 311 6.55e+01 2scuA c.2.1.8,c.23.4.1 30312,31140 1uk8A 282 6.64e+01 c.69.1.10 107907 1wvcA 259 6.91e+01 1yqdA 366 7.00e+01 1wbpA 397 7.21e+01 1q6oA 216 7.26e+01 c.1.2.3 95986 1g55A 343 7.30e+01 1g55A c.66.1.26 34247 1ia8A 289 7.38e+01 1ia8A d.144.1.7 62112 1qgrA 876 7.53e+01 1qgrA a.118.1.1 19119 1zxxA 319 7.61e+01 1umkA 275 7.68e+01 1x0rA 249 7.69e+01 2fr2A 172 7.79e+01 2aamA 309 7.83e+01 1esmA 316 7.97e+01 1esmA c.37.1.6 31953 1iupA 282 8.15e+01 c.69.1.10 76815 1whi 122 8.17e+01 1whi b.39.1.1 24810 1ni9A 338 8.17e+01 e.7.1.2 85739 2erfA 209 8.21e+01 1n3lA 372 8.22e+01 c.26.1.1 79966 1oahA 519 8.28e+01 a.138.1.3 86736 1rreA 200 8.30e+01 d.14.1.10 97791 1vljA 407 8.32e+01 e.22.1.2 108832 1i0rA 169 8.38e+01 1i0rA b.45.1.2 61489 1ku0A 388 8.71e+01 c.69.1.18 72994 1yrcA 414 8.75e+01 1di0A 158 8.79e+01 1di0A c.16.1.1 30957 1dz4A 414 8.81e+01 1phd a.104.1.1 18903 1wybA 392 8.83e+01 2bl9A 238 8.93e+01 1prxA 224 8.97e+01 1prxA c.47.1.10 33076 1szqA 483 8.99e+01 e.44.1.1 99045