;  SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, et al., What is the value added by human intervention in protein
;  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                                    10        20      
                                                     |         |      
T0301 .......M...............................AHPPQIRIPATYLRGGTSKGVFFRL
1w61A mgqekll-fdqkykiikgekkekkknqranrrehqqkreIMRFKKSFTCIDMHTEGEAARIV-T


        30                 40        50        60        70        80 
         |                  |         |         |         |         | 
T0301 EDLPESCRVPG.........EARDRLFMRVIGSPDPYAAHIDGMGGATSSTSKCVILSKSSQPG
1w61A SGLPH-IPGSNmaekkaylqENMDYLRRGIMLEPRGHDDM------------FGAFLFDPIEEG


             90       100       110       120       130       140     
              |         |         |         |         |         |     
T0301 HDVDYLYGQVSIDKPFVDWSGNCGNLSTGAGAFALHAGLVDPARIPEDGICEVRIWQANIGKTI
1w61A ADLGIVFMDT------GGYLNMCGHNSIAAVTAAVETGIVSVP--AKATNVPVVLDT--PAGLV


        150       160       170       180       190       200        2
          |         |         |         |         |         |         
T0301 IAHVPVSGGQVQETGDFELDGVTFPAAEIVLEFLDPSDDGEDGGAIFPTGNLVDDLEV.PGVGT
1w61A RGTAHLQSGTESEV------------SNASIINVPSF--------L---YQQDVVVVLpKPYGE


      10       220       230       240       250       260            
       |         |         |         |         |         |            
T0301 FKATMINAGIPTVFVNAEEIGYRGTELREEINGDPQQLARFERIRVAGALRMGLIKT.....PE
1w61A VRVDIAFGGNFFAIVPAEQLGIDISV-----QNLSRLQEAGELLRTEINRSVKV-QHpqlph--


      270       280       290       300       310       320       330 
        |         |         |         |         |         |         | 
T0301 EAATRQHTPKIAFVAPPRDYRTASGKLVAAGDIDLLVRALSMGKLHHAMMGTAAVAIGTAAAIP
1w61A ----INTVDCVEIYGPPTN----PEA------NYKNVVIFGNRQADRSPCGTGTSAKMATLYAK


            340                                          350       360
              |                                            |         |
T0301 GTLVNLAAGGG..................................ERSA.VRFGHPSGTLRVGA
1w61A GQL-----RIGetfvyesilgslfqgrvlgeeripgvkvpvtkda-EEGmLVV-----TAEITG


                       370       380       390                        
                         |         |         |                        
T0301 ........EASQANGE..WTVTKAIMSRSARILMEGWVRVPGDAF...................
1w61A kafimgfnTMLFDPTDpf---------------KNGFTLKQY--Iwsssvdklaaalehhhhhh