# TARGET T0300 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0300.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 13 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.022 0.010 0.006 0.011 0.116 0.835 2 A 0.038 0.045 0.007 0.023 0.105 0.782 3 S 0.037 0.024 0.015 0.027 0.239 0.659 4 K 0.031 0.022 0.068 0.058 0.395 0.425 5 K 0.024 0.051 0.068 0.039 0.620 0.199 6 P 0.024 0.008 0.046 0.018 0.701 0.202 7 D 0.027 0.012 0.020 0.019 0.588 0.334 8 K 0.049 0.128 0.007 0.020 0.374 0.423 9 T 0.022 0.052 0.003 0.043 0.113 0.768 10 Y 0.001 0.001 0.014 0.963 0.013 0.009 11 E 0.001 0.001 0.014 0.974 0.010 0.003 12 E 0.001 0.001 0.010 0.984 0.005 0.001 13 M 0.001 0.001 0.003 0.991 0.004 0.002 14 V 0.001 0.001 0.001 0.994 0.004 0.001 15 K 0.001 0.001 0.001 0.987 0.008 0.004 16 E 0.001 0.001 0.001 0.988 0.004 0.006 17 V 0.001 0.001 0.001 0.988 0.004 0.006 18 E 0.001 0.001 0.001 0.986 0.005 0.008 19 R 0.001 0.001 0.002 0.980 0.005 0.012 20 L 0.001 0.001 0.002 0.981 0.004 0.012 21 K 0.001 0.001 0.001 0.984 0.005 0.009 22 L 0.001 0.001 0.002 0.983 0.006 0.009 23 E 0.001 0.001 0.002 0.974 0.008 0.016 24 N 0.001 0.001 0.001 0.983 0.004 0.012 25 K 0.001 0.001 0.001 0.989 0.003 0.008 26 T 0.001 0.001 0.001 0.995 0.002 0.003 27 L 0.001 0.001 0.001 0.997 0.001 0.002 28 K 0.001 0.001 0.001 0.998 0.001 0.001 29 Q 0.001 0.001 0.001 0.998 0.001 0.001 30 K 0.001 0.001 0.001 0.995 0.002 0.001 31 V 0.001 0.001 0.002 0.993 0.003 0.002 32 K 0.001 0.001 0.004 0.981 0.009 0.005 33 S 0.002 0.001 0.006 0.872 0.047 0.072 34 S 0.003 0.004 0.014 0.289 0.196 0.494 35 G 0.008 0.026 0.013 0.068 0.287 0.599 36 A 0.007 0.011 0.016 0.026 0.388 0.552 37 V 0.008 0.023 0.029 0.027 0.405 0.508 38 S 0.014 0.025 0.015 0.013 0.525 0.408 39 S 0.023 0.018 0.026 0.016 0.544 0.372 40 D 0.018 0.013 0.018 0.012 0.533 0.405 41 D 0.037 0.029 0.080 0.019 0.559 0.276 42 S 0.053 0.033 0.081 0.028 0.370 0.435 43 I 0.040 0.035 0.056 0.036 0.271 0.561 44 L 0.038 0.057 0.014 0.040 0.222 0.629 45 T 0.012 0.012 0.002 0.044 0.147 0.783 46 A 0.001 0.001 0.006 0.923 0.035 0.035 47 A 0.001 0.001 0.004 0.957 0.028 0.010 48 K 0.001 0.001 0.003 0.975 0.014 0.006 49 R 0.001 0.001 0.001 0.996 0.002 0.002 50 E 0.001 0.001 0.001 0.997 0.001 0.001 51 S 0.001 0.001 0.001 0.997 0.001 0.001 52 I 0.001 0.001 0.001 0.996 0.001 0.002 53 I 0.001 0.001 0.001 0.996 0.001 0.002 54 V 0.001 0.001 0.001 0.992 0.002 0.005 55 S 0.001 0.001 0.001 0.985 0.004 0.010 56 S 0.001 0.001 0.001 0.991 0.002 0.005 57 S 0.001 0.001 0.001 0.994 0.002 0.003 58 R 0.001 0.001 0.001 0.993 0.003 0.003 59 A 0.001 0.001 0.002 0.988 0.005 0.004 60 L 0.001 0.001 0.002 0.979 0.011 0.007 61 G 0.001 0.001 0.001 0.976 0.010 0.012 62 A 0.001 0.001 0.001 0.975 0.008 0.016 63 V 0.001 0.001 0.001 0.984 0.006 0.009 64 A 0.001 0.001 0.002 0.982 0.006 0.010 65 M 0.001 0.001 0.001 0.992 0.003 0.004 66 R 0.001 0.001 0.001 0.994 0.003 0.002 67 K 0.001 0.001 0.001 0.993 0.003 0.003 68 I 0.001 0.001 0.001 0.995 0.002 0.002 69 E 0.001 0.001 0.001 0.994 0.002 0.002 70 A 0.001 0.001 0.001 0.991 0.004 0.004 71 K 0.001 0.001 0.001 0.988 0.005 0.006 72 V 0.001 0.001 0.002 0.975 0.011 0.011 73 R 0.001 0.001 0.004 0.956 0.023 0.016 74 S 0.001 0.001 0.008 0.891 0.053 0.048 75 R 0.001 0.001 0.011 0.827 0.082 0.078 76 A 0.004 0.005 0.033 0.747 0.112 0.099 77 A 0.008 0.006 0.108 0.292 0.312 0.274 78 K 0.012 0.001 0.180 0.235 0.299 0.272 79 A 0.087 0.008 0.104 0.151 0.309 0.340 80 V 0.139 0.093 0.022 0.078 0.198 0.471 81 T 0.082 0.014 0.005 0.085 0.096 0.718 82 E 0.001 0.001 0.043 0.901 0.024 0.030 83 Q 0.001 0.001 0.044 0.914 0.023 0.018 84 E 0.001 0.001 0.042 0.946 0.009 0.003 85 L 0.001 0.001 0.005 0.985 0.005 0.004 86 T 0.001 0.001 0.004 0.990 0.004 0.001 87 S 0.001 0.001 0.008 0.972 0.017 0.003 88 L 0.001 0.001 0.014 0.931 0.041 0.013 89 L 0.001 0.003 0.055 0.887 0.045 0.009 90 Q 0.002 0.004 0.083 0.827 0.057 0.026 91 S 0.019 0.001 0.038 0.212 0.299 0.432 92 L 0.153 0.004 0.017 0.026 0.234 0.566 93 T 0.531 0.020 0.005 0.005 0.102 0.336 94 L 0.886 0.003 0.001 0.002 0.019 0.088 95 R 0.927 0.001 0.001 0.001 0.010 0.060 96 V 0.940 0.002 0.001 0.001 0.006 0.051 97 D 0.912 0.005 0.001 0.001 0.012 0.070 98 V 0.644 0.004 0.001 0.001 0.035 0.315 99 S 0.263 0.005 0.002 0.002 0.129 0.600 100 M 0.100 0.013 0.023 0.011 0.201 0.651 101 E 0.051 0.010 0.023 0.018 0.209 0.689 102 E 0.003 0.004 0.008 0.008 0.123 0.855