# TARGET T0300 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0300.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.03554 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.513 0.063 0.108 0.199 0.024 0.020 0.041 0.010 0.018 0.003 0.001 2 A 0.468 0.123 0.227 0.112 0.020 0.022 0.008 0.003 0.012 0.003 0.001 3 S 0.349 0.185 0.210 0.138 0.060 0.019 0.016 0.003 0.011 0.008 0.001 4 K 0.283 0.082 0.295 0.219 0.021 0.039 0.027 0.006 0.020 0.004 0.004 5 K 0.020 0.217 0.590 0.002 0.013 0.016 0.010 0.001 0.129 0.001 0.001 6 P 0.153 0.004 0.780 0.009 0.001 0.033 0.001 0.001 0.001 0.001 0.020 7 D 0.086 0.128 0.214 0.202 0.092 0.058 0.097 0.080 0.030 0.013 0.001 8 K 0.065 0.265 0.426 0.090 0.082 0.038 0.018 0.003 0.011 0.002 0.001 9 T 0.006 0.199 0.639 0.005 0.091 0.039 0.001 0.001 0.017 0.003 0.001 10 Y 0.989 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 E 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 E 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 M 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 V 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 E 0.965 0.001 0.001 0.035 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 V 0.978 0.002 0.009 0.007 0.001 0.003 0.001 0.001 0.001 0.001 0.001 18 E 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 R 0.987 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.986 0.002 0.003 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 K 0.990 0.001 0.002 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 22 L 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 E 0.983 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 N 0.986 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 K 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 T 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 L 0.976 0.001 0.001 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 K 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 Q 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 K 0.961 0.001 0.001 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 V 0.831 0.009 0.017 0.132 0.001 0.004 0.001 0.001 0.004 0.001 0.001 32 K 0.759 0.029 0.047 0.126 0.003 0.017 0.013 0.001 0.004 0.001 0.001 33 S 0.486 0.108 0.109 0.225 0.026 0.014 0.009 0.004 0.015 0.003 0.001 34 S 0.269 0.072 0.146 0.363 0.052 0.015 0.030 0.013 0.031 0.008 0.001 35 G 0.079 0.011 0.072 0.027 0.094 0.003 0.058 0.327 0.004 0.325 0.001 36 A 0.269 0.092 0.319 0.204 0.036 0.041 0.011 0.007 0.010 0.003 0.007 37 V 0.162 0.267 0.329 0.115 0.060 0.035 0.006 0.005 0.018 0.003 0.001 38 S 0.100 0.233 0.387 0.091 0.060 0.058 0.013 0.004 0.044 0.008 0.001 39 S 0.281 0.104 0.388 0.098 0.060 0.022 0.010 0.005 0.017 0.014 0.002 40 D 0.323 0.043 0.140 0.322 0.026 0.051 0.046 0.019 0.020 0.007 0.002 41 D 0.143 0.115 0.337 0.232 0.036 0.051 0.047 0.008 0.029 0.002 0.001 42 S 0.424 0.137 0.295 0.064 0.022 0.018 0.017 0.008 0.014 0.002 0.001 43 I 0.303 0.158 0.341 0.112 0.011 0.040 0.009 0.002 0.023 0.001 0.001 44 L 0.085 0.219 0.521 0.075 0.026 0.058 0.004 0.001 0.009 0.001 0.001 45 T 0.021 0.355 0.399 0.015 0.131 0.029 0.001 0.001 0.046 0.004 0.001 46 A 0.953 0.003 0.029 0.007 0.002 0.002 0.001 0.001 0.001 0.002 0.001 47 A 0.955 0.001 0.010 0.029 0.001 0.002 0.001 0.001 0.001 0.001 0.001 48 K 0.847 0.007 0.014 0.123 0.001 0.003 0.002 0.001 0.002 0.001 0.001 49 R 0.853 0.034 0.066 0.026 0.004 0.005 0.008 0.002 0.002 0.001 0.001 50 E 0.951 0.014 0.020 0.009 0.002 0.003 0.001 0.001 0.001 0.001 0.001 51 S 0.966 0.012 0.009 0.008 0.003 0.001 0.001 0.001 0.001 0.001 0.001 52 I 0.950 0.026 0.009 0.009 0.002 0.002 0.001 0.001 0.002 0.001 0.001 53 I 0.955 0.016 0.012 0.009 0.001 0.005 0.001 0.001 0.003 0.001 0.001 54 V 0.959 0.014 0.008 0.015 0.001 0.002 0.001 0.001 0.001 0.001 0.001 55 S 0.957 0.008 0.009 0.013 0.006 0.003 0.003 0.001 0.001 0.001 0.001 56 S 0.919 0.006 0.005 0.058 0.003 0.003 0.001 0.001 0.002 0.001 0.001 57 S 0.952 0.003 0.004 0.035 0.001 0.002 0.001 0.001 0.001 0.001 0.001 58 R 0.973 0.002 0.003 0.017 0.001 0.002 0.001 0.001 0.001 0.001 0.001 59 A 0.973 0.001 0.002 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 L 0.952 0.001 0.002 0.045 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 G 0.989 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 A 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 V 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 A 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 M 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 R 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 K 0.985 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 I 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 E 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 A 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 K 0.960 0.001 0.001 0.038 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 V 0.966 0.004 0.005 0.018 0.001 0.004 0.001 0.001 0.002 0.001 0.001 73 R 0.965 0.007 0.006 0.017 0.001 0.003 0.001 0.001 0.001 0.001 0.001 74 S 0.959 0.004 0.007 0.024 0.003 0.001 0.001 0.001 0.001 0.001 0.001 75 R 0.831 0.007 0.011 0.134 0.003 0.004 0.004 0.001 0.004 0.001 0.001 76 A 0.817 0.017 0.030 0.112 0.003 0.008 0.004 0.002 0.007 0.001 0.001 77 A 0.728 0.032 0.129 0.075 0.009 0.009 0.008 0.002 0.005 0.003 0.001 78 K 0.715 0.018 0.135 0.100 0.006 0.009 0.009 0.004 0.002 0.001 0.001 79 A 0.483 0.077 0.182 0.175 0.025 0.024 0.016 0.008 0.008 0.002 0.001 80 V 0.233 0.310 0.259 0.105 0.042 0.032 0.006 0.001 0.011 0.001 0.001 81 T 0.052 0.303 0.393 0.022 0.089 0.060 0.001 0.001 0.068 0.011 0.001 82 E 0.994 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 Q 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 E 0.984 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 L 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 T 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 S 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 L 0.970 0.001 0.001 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 L 0.916 0.005 0.015 0.056 0.001 0.003 0.002 0.001 0.002 0.001 0.001 90 Q 0.923 0.005 0.017 0.052 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 S 0.115 0.006 0.008 0.836 0.005 0.004 0.016 0.005 0.004 0.001 0.001 92 L 0.003 0.316 0.559 0.013 0.022 0.043 0.006 0.001 0.039 0.001 0.001 93 T 0.021 0.692 0.167 0.022 0.035 0.039 0.006 0.001 0.017 0.001 0.001 94 L 0.001 0.892 0.058 0.001 0.033 0.006 0.001 0.001 0.009 0.001 0.001 95 R 0.002 0.723 0.182 0.001 0.011 0.045 0.001 0.001 0.035 0.001 0.001 96 V 0.002 0.866 0.058 0.001 0.027 0.018 0.001 0.001 0.028 0.001 0.001 97 D 0.006 0.340 0.424 0.002 0.006 0.180 0.002 0.001 0.038 0.001 0.002 98 V 0.023 0.670 0.166 0.028 0.034 0.041 0.001 0.001 0.037 0.001 0.001 99 S 0.018 0.362 0.310 0.014 0.194 0.057 0.007 0.001 0.031 0.006 0.001 100 M 0.349 0.154 0.231 0.153 0.039 0.035 0.008 0.003 0.022 0.004 0.002 101 E 0.347 0.112 0.328 0.088 0.037 0.030 0.013 0.007 0.026 0.011 0.001 102 E 0.632 0.039 0.124 0.117 0.017 0.015 0.025 0.011 0.012 0.006 0.002