# TARGET T0300 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0300.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.85162 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.396 0.171 0.172 0.112 0.073 0.012 0.020 0.020 0.011 0.011 0.001 2 A 0.358 0.164 0.243 0.107 0.034 0.030 0.020 0.008 0.022 0.012 0.001 3 S 0.233 0.191 0.265 0.119 0.080 0.030 0.035 0.006 0.026 0.013 0.002 4 K 0.262 0.077 0.270 0.200 0.020 0.075 0.052 0.006 0.031 0.003 0.005 5 K 0.057 0.154 0.604 0.006 0.018 0.025 0.022 0.001 0.110 0.001 0.002 6 P 0.287 0.005 0.601 0.031 0.001 0.037 0.001 0.001 0.001 0.001 0.036 7 D 0.111 0.123 0.249 0.190 0.069 0.061 0.103 0.043 0.032 0.018 0.001 8 K 0.130 0.227 0.322 0.147 0.061 0.049 0.041 0.009 0.010 0.002 0.001 9 T 0.017 0.238 0.570 0.011 0.098 0.041 0.001 0.001 0.018 0.005 0.001 10 Y 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 E 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 E 0.989 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 M 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 V 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 K 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 E 0.947 0.001 0.001 0.051 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 V 0.969 0.004 0.009 0.013 0.001 0.003 0.001 0.001 0.001 0.001 0.001 18 E 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 R 0.976 0.002 0.001 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.970 0.005 0.008 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 K 0.985 0.003 0.003 0.004 0.001 0.002 0.001 0.001 0.001 0.001 0.001 22 L 0.982 0.003 0.002 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 E 0.957 0.003 0.004 0.032 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 N 0.950 0.002 0.004 0.031 0.001 0.005 0.003 0.001 0.004 0.001 0.001 25 K 0.978 0.001 0.002 0.015 0.001 0.001 0.002 0.001 0.001 0.001 0.001 26 T 0.975 0.001 0.002 0.017 0.001 0.002 0.001 0.001 0.001 0.001 0.001 27 L 0.976 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 K 0.993 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 Q 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 K 0.951 0.001 0.002 0.045 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 V 0.858 0.016 0.025 0.088 0.001 0.006 0.001 0.001 0.004 0.001 0.001 32 K 0.852 0.017 0.034 0.077 0.003 0.007 0.006 0.002 0.002 0.002 0.001 33 S 0.527 0.098 0.104 0.174 0.043 0.013 0.013 0.006 0.017 0.006 0.001 34 S 0.363 0.052 0.135 0.330 0.047 0.011 0.022 0.014 0.017 0.008 0.001 35 G 0.071 0.013 0.076 0.035 0.121 0.004 0.063 0.257 0.004 0.355 0.001 36 A 0.148 0.164 0.461 0.113 0.047 0.035 0.007 0.004 0.011 0.003 0.007 37 V 0.106 0.308 0.427 0.050 0.030 0.049 0.005 0.003 0.019 0.003 0.001 38 S 0.067 0.254 0.438 0.049 0.056 0.061 0.012 0.003 0.049 0.010 0.001 39 S 0.433 0.065 0.314 0.089 0.046 0.022 0.005 0.003 0.010 0.008 0.004 40 D 0.322 0.016 0.086 0.454 0.013 0.026 0.036 0.023 0.015 0.006 0.002 41 D 0.126 0.072 0.403 0.194 0.033 0.046 0.071 0.021 0.028 0.005 0.002 42 S 0.277 0.178 0.336 0.066 0.044 0.028 0.031 0.017 0.016 0.005 0.001 43 I 0.209 0.232 0.353 0.093 0.026 0.039 0.010 0.003 0.032 0.002 0.001 44 L 0.066 0.249 0.512 0.066 0.030 0.057 0.004 0.001 0.012 0.001 0.001 45 T 0.017 0.342 0.439 0.012 0.120 0.028 0.002 0.001 0.034 0.004 0.001 46 A 0.909 0.008 0.051 0.012 0.003 0.003 0.005 0.002 0.002 0.003 0.001 47 A 0.935 0.002 0.029 0.024 0.001 0.003 0.003 0.002 0.001 0.001 0.001 48 K 0.864 0.009 0.016 0.092 0.002 0.006 0.005 0.002 0.004 0.001 0.001 49 R 0.877 0.026 0.047 0.027 0.003 0.005 0.007 0.004 0.002 0.001 0.001 50 E 0.930 0.023 0.025 0.013 0.003 0.003 0.002 0.001 0.001 0.001 0.001 51 S 0.951 0.021 0.011 0.010 0.004 0.001 0.001 0.001 0.001 0.001 0.001 52 I 0.948 0.028 0.008 0.008 0.002 0.003 0.001 0.001 0.002 0.001 0.001 53 I 0.932 0.026 0.013 0.018 0.001 0.007 0.001 0.001 0.004 0.001 0.001 54 V 0.934 0.021 0.012 0.022 0.003 0.004 0.001 0.001 0.002 0.001 0.001 55 S 0.915 0.015 0.015 0.034 0.007 0.005 0.003 0.002 0.002 0.001 0.001 56 S 0.867 0.010 0.013 0.083 0.005 0.010 0.005 0.002 0.005 0.002 0.001 57 S 0.930 0.006 0.008 0.044 0.001 0.006 0.001 0.001 0.002 0.001 0.001 58 R 0.960 0.002 0.004 0.027 0.001 0.002 0.002 0.001 0.001 0.001 0.001 59 A 0.956 0.002 0.002 0.034 0.001 0.002 0.002 0.001 0.001 0.001 0.001 60 L 0.935 0.001 0.003 0.058 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 G 0.989 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 A 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 V 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 A 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 M 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 R 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 K 0.987 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 I 0.987 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 E 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 A 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 K 0.973 0.001 0.001 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 V 0.967 0.004 0.005 0.019 0.001 0.003 0.001 0.001 0.001 0.001 0.001 73 R 0.970 0.005 0.006 0.015 0.001 0.002 0.001 0.001 0.001 0.001 0.001 74 S 0.961 0.004 0.005 0.025 0.002 0.001 0.001 0.001 0.001 0.001 0.001 75 R 0.819 0.006 0.009 0.151 0.002 0.005 0.003 0.001 0.004 0.001 0.001 76 A 0.717 0.029 0.051 0.162 0.004 0.016 0.006 0.003 0.011 0.001 0.001 77 A 0.665 0.048 0.162 0.064 0.014 0.014 0.016 0.003 0.007 0.007 0.001 78 K 0.665 0.023 0.127 0.139 0.007 0.017 0.011 0.006 0.004 0.001 0.001 79 A 0.426 0.107 0.214 0.152 0.028 0.028 0.021 0.011 0.010 0.004 0.001 80 V 0.241 0.281 0.271 0.106 0.035 0.041 0.010 0.002 0.012 0.001 0.001 81 T 0.076 0.220 0.443 0.026 0.088 0.074 0.003 0.001 0.057 0.011 0.001 82 E 0.990 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 Q 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 E 0.984 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 T 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 S 0.991 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 L 0.973 0.001 0.001 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 L 0.905 0.006 0.007 0.077 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 Q 0.910 0.004 0.039 0.041 0.001 0.002 0.002 0.001 0.001 0.001 0.001 91 S 0.107 0.003 0.006 0.859 0.003 0.003 0.005 0.009 0.005 0.001 0.001 92 L 0.002 0.175 0.733 0.008 0.007 0.049 0.011 0.001 0.014 0.001 0.001 93 T 0.030 0.643 0.198 0.024 0.047 0.038 0.004 0.001 0.015 0.001 0.001 94 L 0.001 0.904 0.047 0.001 0.027 0.006 0.001 0.001 0.014 0.001 0.001 95 R 0.001 0.702 0.196 0.001 0.008 0.053 0.001 0.001 0.037 0.001 0.001 96 V 0.005 0.826 0.072 0.001 0.031 0.028 0.001 0.001 0.036 0.001 0.001 97 D 0.010 0.283 0.447 0.005 0.008 0.199 0.008 0.001 0.038 0.001 0.002 98 V 0.029 0.701 0.123 0.043 0.043 0.028 0.001 0.001 0.031 0.001 0.001 99 S 0.013 0.339 0.194 0.009 0.390 0.024 0.005 0.001 0.016 0.008 0.001 100 M 0.306 0.208 0.181 0.216 0.036 0.025 0.006 0.002 0.016 0.002 0.001 101 E 0.153 0.212 0.376 0.059 0.076 0.038 0.020 0.004 0.048 0.014 0.001 102 E 0.523 0.044 0.175 0.082 0.024 0.022 0.044 0.034 0.013 0.036 0.003