# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1debA 54 4.25e-01 1debA h.1.18.1 45660 1azsA 220 5.35e-01 1azsA d.58.29.1 39416 1ns5A 155 8.93e-01 c.116.1.3 80705 1dtdA 303 9.00e-01 1aye c.56.5.1 33823 1y8aA 332 1.34e+00 1q8bA 105 1.54e+00 d.58.4.6 96201 1f45B 197 1.79e+00 1f45B a.26.1.1 59642 1sflA 238 1.91e+00 1sb0A 87 2.06e+00 a.12.1.1 98789 1whzA 70 3.46e+00 1o6dA 163 3.84e+00 c.116.1.3 92567 1ad1A 266 5.89e+00 1aj2 c.1.21.1 29668 1t56A 216 6.44e+00 a.4.1.9,a.121.1.1 106428,106429 1h4xA 117 6.69e+00 1auz c.13.2.1 60626 1dc1A 323 7.99e+00 1dc1A c.52.1.11 33321 1mg4A 113 8.49e+00 d.15.11.1 84953 1p9iA 31 8.55e+00 h.1.10.1 94390 1mwqA 101 8.79e+00 d.58.4.7 91481 1cq3A 233 8.87e+00 1cq3A b.27.1.1 23923 1s50A 259 1.18e+01 1a4iA 301 1.23e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1lssA 140 1.26e+01 c.2.1.9 74246 1bgc 174 1.28e+01 1bgc a.26.1.1 16822 1v54F 98 1.29e+01 g.41.5.3 100327 1r4xA 275 1.40e+01 b.1.10.3,d.105.1.2 97054,97055 1goiA 499 1.41e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1ir6A 424 1.42e+01 c.107.1.2 71342 1a5t 334 1.50e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1cvrA 435 1.57e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1js8A 394 1.58e+01 a.86.1.1,b.112.1.1 67219,67220 1j8bA 112 1.61e+01 d.222.1.1 77101 1fmhA 33 1.62e+01 1fmhB k.6.1.1 46409 1t95A 240 1.64e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1hruA 188 1.68e+01 1hruA d.115.1.1 40926 1mwmA 320 1.85e+01 c.55.1.1,c.55.1.1 79580,79581 1cuoA 129 1.85e+01 1nwpA b.6.1.1 23015 1l3iA 192 1.86e+01 c.66.1.22 77676 1gqnA 252 1.86e+01 c.1.10.1 90514 1n35A 1267 1.88e+01 e.8.1.4 79935 1m12A 84 1.89e+01 a.64.1.1 84745 1oqcA 125 1.93e+01 a.24.15.1 87264 1h54A 754 1.98e+01 a.102.1.4,b.30.5.3 60634,60635 1nh1A 330 2.16e+01 e.45.1.1 91871 2fcwA 109 2.18e+01 1itxA 419 2.19e+01 c.1.8.5,d.26.3.1 71425,71426 1a4pA 96 2.23e+01 1b4cA a.39.1.2 17176 1lu4A 136 2.35e+01 c.47.1.10 91124 1gxuA 91 2.37e+01 d.58.10.1 76378 1st9A 143 2.41e+01 c.47.1.10 98987 1fm0E 150 2.45e+01 1fmaE d.41.5.1 38629 1jgsA 138 2.47e+01 a.4.5.28 66683 1rypH 205 2.48e+01 d.153.1.4 41876 1nwwA 149 2.50e+01 d.17.4.8 86306 1jmtB 28 2.59e+01 1f5vA 240 2.66e+01 1bkjA d.90.1.1 40255 1tr0A 108 2.70e+01 d.58.4.4 107261 1pueE 89 2.74e+01 1awcA a.4.5.21 16165 1i5nA 146 2.79e+01 1i5nA a.24.10.3 61805 1mqvA 125 2.80e+01 a.24.3.2 79415 1m1nA 491 2.90e+01 c.92.2.3 78417 1ig5A 75 2.98e+01 4icb a.39.1.1 62363 1scfA 273 2.99e+01 1exzA a.26.1.2 16873 1hc7A 477 3.00e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1j6rA 214 3.01e+01 d.173.1.2 71598 1p65A 73 3.02e+01 d.254.1.1 94156 1lzjA 292 3.04e+01 c.68.1.9 74352 2gjlA 328 3.09e+01 1aisB 200 3.09e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1j8mF 297 3.13e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1suwA 249 3.17e+01 e.52.1.1 106027 1h5oA 42 3.18e+01 g.9.1.2 83484 1pvgA 418 3.21e+01 d.14.1.3,d.122.1.2 95161,95162 1td6A 306 3.24e+01 1r9cA 139 3.25e+01 d.32.1.2 97255 1sx7A 164 3.25e+01 1gq6A 313 3.32e+01 c.42.1.1 70341 1i5pA 633 3.35e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1qkmA 255 3.37e+01 3erdA a.123.1.1 19309 1ihoA 283 3.38e+01 1ihoA c.26.1.4 62390 1qo7A 394 3.44e+01 1qo7A c.69.1.11 34697 1ymtA 246 3.50e+01 1tw9A 206 3.50e+01 a.45.1.1,c.47.1.5 107381,107382 1qamA 244 3.51e+01 2ercA c.66.1.24 34220 1t6fA 37 3.54e+01 h.1.28.1 106565 1reqB 637 3.60e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1qtnA 164 3.83e+01 1pauA c.17.1.1 30999 1kgsA 225 3.84e+01 a.4.6.1,c.23.1.1 68596,68597 1lxjA 104 3.94e+01 d.58.48.1 84736 1qh8A 478 3.95e+01 1qguA c.92.2.3 35633 1ihjA 98 3.98e+01 1pdr b.36.1.1 62382 1s7zA 117 3.98e+01 a.159.3.1 98715 1lkoA 191 4.11e+01 a.25.1.1,g.41.5.1 78063,78064 1914 232 4.12e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1r4vA 171 4.24e+01 a.197.1.1 97049 1l6xB 34 4.27e+01 k.13.1.1 73644 1ja9A 274 4.52e+01 c.2.1.2 62817 1yocA 147 4.64e+01 1gs9A 165 4.69e+01 a.24.1.1 83313 1ckeA 227 4.72e+01 1ckeA c.37.1.1 31846 1vkkA 154 4.73e+01 d.109.1.2 108669 1epfA 191 4.76e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 2ez3A 302 4.76e+01 1mijA 152 4.80e+01 a.4.1.1 79150 1vkiA 181 4.82e+01 d.116.1.1 108664 1omhA 293 4.86e+01 d.89.1.5 93348 1o9gA 250 4.87e+01 c.66.1.29 86692 5nul 138 4.88e+01 5nul c.23.5.1 31191 1jhgA 101 4.98e+01 1jhgA a.4.12.1 19009 1ryp2 233 5.00e+01 1ryp2 1s3cA 141 5.08e+01 1q44A 326 5.11e+01 c.37.1.5 95779 1oo0A 147 5.11e+01 d.232.1.1 87182 1gu4A 78 5.18e+01 h.1.3.1 83317 1sgwA 214 5.22e+01 c.37.1.12 105541 1s5pA 235 5.27e+01 c.31.1.5 98569 1jb3A 131 5.31e+01 1jc7A b.40.3.2 62833 1kkoA 413 5.39e+01 c.1.11.2,d.54.1.1 68675,68676 1y0bA 197 5.41e+01 1vl1A 232 5.45e+01 c.124.1.1 108707 1pt6A 213 5.47e+01 c.62.1.1 95091 1bouA 139 5.50e+01 1bouA a.88.1.1 18521 2sak 121 5.52e+01 2sak d.15.5.1 37711 1jlvA 209 5.53e+01 a.45.1.1,c.47.1.5 71729,71730 1ru0A 105 5.53e+01 1f89A 291 5.57e+01 d.160.1.1 64988 1nd6A 354 5.62e+01 c.60.1.2 80407 1pp0A 199 5.64e+01 d.103.1.1 104211 1ummA 172 5.74e+01 a.3.1.1 107958 1eumA 165 5.76e+01 1eumA a.25.1.1 59507 1i2kA 269 5.78e+01 e.17.1.1 90661 1go4E 100 5.79e+01 h.1.22.1 70296 1lml 478 5.83e+01 1lml d.92.1.3 40295 1o6zA 303 5.93e+01 c.2.1.5,d.162.1.1 81107,81108 1hr0W 71 5.98e+01 1ah9 b.40.4.5 25329 1nlwA 80 6.02e+01 a.38.1.1 80633 1s9rA 410 6.07e+01 d.126.1.4 98758 1k0wA 231 6.08e+01 c.74.1.1 77220 1h05A 146 6.13e+01 c.23.13.1 76433 1ajsA 412 6.17e+01 1ajsA c.67.1.1 34276 1ta8A 332 6.21e+01 1gd2E 70 6.27e+01 1gd2G h.1.3.1 45528 1xppA 115 6.30e+01 1al3 324 6.30e+01 1al3 c.94.1.1 35835 1gnxA 479 6.31e+01 c.1.8.4 76241 1hnjA 317 6.32e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1l8dA 112 6.38e+01 h.4.12.1 73687 1u8vA 490 6.56e+01 1j3bA 529 6.61e+01 c.91.1.1,c.109.1.1 77071,77072 1hw1A 239 6.61e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1hx1B 114 6.62e+01 1hx1B a.7.7.1 61350 1ehyA 294 6.63e+01 1ehyA c.69.1.11 34693 1s1fA 406 6.63e+01 1mla 309 6.63e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1f60B 94 6.64e+01 1b64 d.58.12.1 39307 1gqaA 130 6.69e+01 a.24.3.2 76275 1t13A 158 6.75e+01 2pvbA 107 6.75e+01 1a75A a.39.1.4 17205 2bjfA 329 6.87e+01 1khdA 345 6.89e+01 a.46.2.1,c.27.1.1 77400,77401 1g24A 211 6.89e+01 1g24A d.166.1.1 42270 1he1A 135 6.97e+01 1he1A a.24.11.1 16641 1auiB 169 6.99e+01 1auiB a.39.1.5 17325 1jyeA 349 7.03e+01 c.93.1.1 67455 1bebA 162 7.05e+01 1bebA b.60.1.1 27115 1q4rA 112 7.10e+01 d.58.4.4 95823 1nmeA 146 7.10e+01 c.17.1.1 85874 1pjhA 280 7.10e+01 c.14.1.3 94761 1thx 115 7.16e+01 1thx c.47.1.1 32732 1pvdA 537 7.30e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1oe8A 211 7.34e+01 a.45.1.1,c.47.1.5 86905,86906 1n1jA 93 7.47e+01 a.22.1.3 79813 1q8cA 151 7.53e+01 a.79.1.2 96202 1fyhB 229 7.54e+01 1jrhI b.1.2.1,b.1.2.1 22055,22056 1im8A 244 7.60e+01 c.66.1.14 66212 1tkeA 224 7.64e+01 1chd 203 7.65e+01 1chd c.40.1.1 32478 1mkyA 439 7.75e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1jw2A 72 7.83e+01 a.23.5.1 67372 1q77A 138 7.84e+01 c.26.2.4 96023 1ddjA 247 7.86e+01 5ptp b.47.1.2 26362 1dbfA 127 7.96e+01 2chsA d.79.1.2 39761 1sgvA 316 8.02e+01 b.122.1.1,d.265.1.2 98858,98859 1jw9B 249 8.05e+01 c.111.1.1 67377 1vkfA 188 8.14e+01 c.1.29.1 108656 1fxkB 109 8.15e+01 1fxkA a.2.5.1 15704 1wmhA 89 8.16e+01 1nd9A 49 8.16e+01 a.6.1.6 85575 1r8iA 213 8.21e+01 a.8.7.1 97239 1i1wA 303 8.25e+01 c.1.8.3 76732 1a3aA 148 8.29e+01 1a3aA d.112.1.1 40917 1fvgA 199 8.32e+01 1fvaA d.58.28.1 39408 1ckmA 330 8.37e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1h5wA 309 8.49e+01 e.27.1.1 65635 1fiqB 350 8.66e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1i3zA 103 8.68e+01 d.93.1.1 83667 1rtu 114 8.88e+01 9rnt d.1.1.4 36139 1bf6A 291 8.88e+01 1pscA c.1.9.3 29065