# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1debA 54 1.49e-01 1debA h.1.18.1 45660 1pb6A 212 4.21e-01 a.4.1.9,a.121.1.1 88017,88018 1go4E 100 8.79e-01 h.1.22.1 70296 1fmhA 33 1.59e+00 1fmhB k.6.1.1 46409 1j8bA 112 1.59e+00 d.222.1.1 77101 1lzjA 292 3.27e+00 c.68.1.9 74352 1b35B 255 4.16e+00 1b35B b.121.4.1 23334 1mknA 59 4.75e+00 1mknA g.5.1.1 44383 1f45B 197 5.70e+00 1f45B a.26.1.1 59642 1p9iA 31 6.16e+00 h.1.10.1 94390 1mwqA 101 6.69e+00 d.58.4.7 91481 1q8bA 105 6.73e+00 d.58.4.6 96201 1ymtA 246 7.01e+00 1hr0W 71 7.47e+00 1ah9 b.40.4.5 25329 1gotB 340 7.54e+00 1tbgA b.69.4.1 27648 1t6fA 37 7.84e+00 h.1.28.1 106565 1jsdB 176 8.14e+00 h.3.1.1 63259 1q2fA 32 9.34e+00 j.69.1.1 95627 1whzA 70 9.48e+00 1sb2A 133 9.75e+00 1ry9A 145 1.01e+01 d.198.1.1 98094 1jw2A 72 1.10e+01 a.23.5.1 67372 1fmhB 33 1.11e+01 1fmhB k.6.1.1 46410 1gu4A 78 1.13e+01 h.1.3.1 83317 1kq6A 141 1.26e+01 d.189.1.1 91020 1exrA 148 1.29e+01 1cll a.39.1.5 17299 1no4A 97 1.53e+01 h.1.24.1 85918 1l1oC 181 1.58e+01 b.40.4.3 73480 1rzhH 260 1.58e+01 b.41.1.1,f.23.10.1 98162,98163 1l8dA 112 1.59e+01 h.4.12.1 73687 1sedA 117 1.61e+01 a.219.1.1 105449 1exqA 154 1.61e+01 1b9dA c.55.3.2 33646 1ngmB 72 1.71e+01 j.104.1.1 85687 1mg4A 113 1.72e+01 d.15.11.1 84953 1azsA 220 1.73e+01 1azsA d.58.29.1 39416 1a93B 34 1.75e+01 1a93B h.1.3.1 45545 1lxjA 104 1.83e+01 d.58.48.1 84736 1t6aA 126 1.87e+01 d.129.8.1 106555 1pzwA 80 2.05e+01 g.39.1.10 95483 1v54F 98 2.07e+01 g.41.5.3 100327 1r6xA 395 2.23e+01 b.122.1.3,c.26.1.5 97167,97168 1qo7A 394 2.29e+01 1qo7A c.69.1.11 34697 1p94A 76 2.32e+01 a.43.1.3 94380 1ga3A 113 2.33e+01 1ga3A a.26.1.2 60411 1m0dA 138 2.40e+01 c.52.1.17 74354 1qsgA 265 2.42e+01 1eny c.2.1.2 29935 1s9kD 53 2.46e+01 1qamA 244 2.62e+01 2ercA c.66.1.24 34220 1ta8A 332 2.74e+01 1y8aA 332 2.82e+01 1cuoA 129 2.86e+01 1nwpA b.6.1.1 23015 1qkkA 155 2.87e+01 1dbwA c.23.1.1 31104 1egwA 77 2.87e+01 1mnmA d.88.1.1 40234 1fc4A 401 2.91e+01 1bs0A c.67.1.4 59760 1dc1A 323 2.93e+01 1dc1A c.52.1.11 33321 1hyvA 166 2.96e+01 1b9dA c.55.3.2 61424 1sflA 238 3.02e+01 1al3 324 3.05e+01 1al3 c.94.1.1 35835 1scfA 273 3.11e+01 1exzA a.26.1.2 16873 1sr9A 644 3.15e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1eg3A 261 3.18e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1ecmA 109 3.24e+01 1ecmA a.130.1.1 19492 1nwwA 149 3.44e+01 d.17.4.8 86306 1h99A 224 3.45e+01 a.142.1.1,a.142.1.1 60814,60815 1p65A 73 3.61e+01 d.254.1.1 94156 1t56A 216 3.65e+01 a.4.1.9,a.121.1.1 106428,106429 1qopB 396 3.74e+01 2tysB c.79.1.1 35270 1aym3 238 3.86e+01 1aym3 1nu7D 282 3.87e+01 a.8.6.1,a.8.6.1 92191,92192 1a34A 159 4.02e+01 1a34A b.121.7.1 23286 1fm0E 150 4.22e+01 1fmaE d.41.5.1 38629 1ixcA 294 4.27e+01 a.4.5.37,c.94.1.1 83764,83765 1hx1B 114 4.32e+01 1hx1B a.7.7.1 61350 1h4xA 117 4.38e+01 1auz c.13.2.1 60626 2bjfA 329 4.63e+01 1nlwA 80 4.98e+01 a.38.1.1 80633 1a5t 334 5.00e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 1f35A 162 5.26e+01 1f35A b.94.1.1 59628 1pq4A 291 5.31e+01 c.92.2.2 94995 1h5oA 42 5.41e+01 g.9.1.2 83484 1s1i0 130 5.42e+01 1mkyA 439 5.45e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1bgc 174 5.46e+01 1bgc a.26.1.1 16822 1f89A 291 5.60e+01 d.160.1.1 64988 1o26A 232 5.60e+01 d.207.1.1 86566 1a4iA 301 5.70e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1neeA 138 5.71e+01 d.241.1.1,g.59.1.1 91841,91842 1ckeA 227 5.76e+01 1ckeA c.37.1.1 31846 1u7iA 136 5.87e+01 d.32.1.7 107724 1g7nA 131 5.92e+01 b.60.1.2 83274 1iw0A 215 5.93e+01 a.132.1.1 83720 1ovlA 271 6.06e+01 a.123.1.1 87455 1rxqA 178 6.14e+01 a.213.1.1 105118 1j6rA 214 6.17e+01 d.173.1.2 71598 1jvr 137 6.18e+01 1jvr a.61.1.2 18132 1ye8A 178 6.22e+01 1fleI 57 6.25e+01 1fleI g.3.14.1 44352 1fxlA 167 6.26e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1i27A 73 6.33e+01 1i27A a.4.5.30 61555 1dpgA 485 6.37e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1f2lA 76 6.41e+01 1dokA d.9.1.1 37436 1mwmA 320 6.50e+01 c.55.1.1,c.55.1.1 79580,79581 1n69A 81 6.62e+01 a.64.1.3 80118 1fjlA 81 6.77e+01 2hddA a.4.1.1 16017 2bezF 42 6.78e+01 1r6fA 310 6.83e+01 e.46.1.1 97149 1yocA 147 6.86e+01 1oohA 126 6.98e+01 a.39.2.1 93383 1bouA 139 7.01e+01 1bouA a.88.1.1 18521 1j8mF 297 7.10e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1ggzA 148 7.10e+01 a.39.1.5 70176 1dcoA 104 7.18e+01 1dcpA d.74.1.1 39680 1sx7A 164 7.18e+01 1r89A 437 7.23e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2sak 121 7.27e+01 2sak d.15.5.1 37711 1e0bA 68 7.37e+01 1e0bA b.34.13.2 37476 1tueB 218 7.39e+01 b.91.1.1 107324 1b5fB 87 7.48e+01 1b5fB 1onrA 316 7.60e+01 1onrA c.1.10.1 29169 1sgwA 214 7.83e+01 c.37.1.12 105541 1f94A 63 7.86e+01 1f94A g.7.1.1 44435 1r4xA 275 7.88e+01 b.1.10.3,d.105.1.2 97054,97055 1jmtB 28 7.91e+01 1ryqA 69 7.92e+01 g.41.9.3 105126 1stzA 338 7.93e+01 a.4.5.51,d.110.2.3 106009,106010 1puiA 210 8.08e+01 c.37.1.8 88292 1guuA 52 8.30e+01 a.4.1.3 83332 1q90M 39 8.30e+01 f.23.25.1 96246 1m12A 84 8.35e+01 a.64.1.1 84745 1mtyB 384 8.67e+01 1mtyB a.25.1.2 16740 2gjlA 328 8.67e+01 1owxA 121 8.71e+01 d.58.7.1 87494 1jgsA 138 8.85e+01 a.4.5.28 66683 1xkpA 246 8.94e+01