# TARGET T0300 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0300.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.88843 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.016 0.009 0.016 0.018 0.183 0.759 2 A 0.024 0.020 0.056 0.038 0.257 0.604 3 S 0.015 0.018 0.064 0.028 0.281 0.594 4 K 0.008 0.017 0.026 0.018 0.316 0.615 5 K 0.009 0.014 0.020 0.009 0.465 0.484 6 P 0.012 0.009 0.019 0.009 0.517 0.434 7 D 0.015 0.017 0.025 0.011 0.498 0.434 8 K 0.029 0.047 0.005 0.010 0.292 0.617 9 T 0.016 0.013 0.001 0.018 0.044 0.908 10 Y 0.001 0.001 0.006 0.981 0.004 0.008 11 E 0.001 0.001 0.004 0.992 0.002 0.001 12 E 0.001 0.001 0.004 0.992 0.002 0.001 13 M 0.001 0.001 0.002 0.993 0.001 0.003 14 V 0.001 0.001 0.001 0.999 0.001 0.001 15 K 0.001 0.001 0.001 0.999 0.001 0.001 16 E 0.001 0.001 0.001 0.998 0.001 0.001 17 V 0.001 0.001 0.001 0.999 0.001 0.001 18 E 0.001 0.001 0.001 0.999 0.001 0.001 19 R 0.001 0.001 0.001 0.999 0.001 0.001 20 L 0.001 0.001 0.001 0.998 0.001 0.001 21 K 0.001 0.001 0.001 0.995 0.002 0.002 22 L 0.001 0.001 0.002 0.997 0.001 0.001 23 E 0.001 0.001 0.001 0.995 0.002 0.002 24 N 0.001 0.001 0.001 0.992 0.003 0.004 25 K 0.001 0.001 0.001 0.998 0.001 0.001 26 T 0.001 0.001 0.001 0.999 0.001 0.001 27 L 0.001 0.001 0.001 0.998 0.001 0.001 28 K 0.001 0.001 0.001 0.998 0.001 0.001 29 Q 0.001 0.001 0.001 0.997 0.001 0.001 30 K 0.001 0.001 0.002 0.993 0.003 0.002 31 V 0.001 0.001 0.003 0.984 0.007 0.005 32 K 0.001 0.001 0.003 0.978 0.012 0.005 33 S 0.001 0.001 0.004 0.927 0.032 0.035 34 S 0.002 0.003 0.006 0.512 0.154 0.324 35 G 0.006 0.010 0.007 0.026 0.277 0.674 36 A 0.033 0.026 0.016 0.011 0.298 0.615 37 V 0.072 0.045 0.024 0.014 0.231 0.613 38 S 0.045 0.019 0.013 0.015 0.240 0.668 39 S 0.024 0.013 0.013 0.025 0.297 0.628 40 D 0.015 0.012 0.041 0.052 0.402 0.478 41 D 0.025 0.012 0.117 0.077 0.519 0.249 42 S 0.048 0.014 0.201 0.072 0.448 0.217 43 I 0.079 0.031 0.109 0.070 0.302 0.408 44 L 0.069 0.058 0.016 0.037 0.177 0.641 45 T 0.020 0.008 0.001 0.013 0.092 0.865 46 A 0.001 0.001 0.012 0.944 0.016 0.027 47 A 0.001 0.001 0.004 0.992 0.002 0.001 48 K 0.001 0.001 0.005 0.993 0.001 0.001 49 R 0.001 0.001 0.001 0.997 0.001 0.001 50 E 0.001 0.001 0.001 0.999 0.001 0.001 51 S 0.001 0.001 0.001 0.999 0.001 0.001 52 I 0.001 0.001 0.001 0.999 0.001 0.001 53 I 0.001 0.001 0.001 0.998 0.001 0.001 54 V 0.001 0.001 0.002 0.996 0.001 0.001 55 S 0.001 0.001 0.003 0.994 0.002 0.001 56 S 0.001 0.001 0.006 0.987 0.003 0.004 57 S 0.001 0.001 0.009 0.977 0.005 0.009 58 R 0.001 0.001 0.012 0.966 0.009 0.012 59 A 0.001 0.001 0.009 0.962 0.010 0.018 60 L 0.001 0.001 0.006 0.958 0.011 0.024 61 G 0.001 0.001 0.005 0.945 0.014 0.035 62 A 0.001 0.001 0.003 0.993 0.002 0.002 63 V 0.001 0.001 0.001 0.997 0.001 0.001 64 A 0.001 0.001 0.001 0.999 0.001 0.001 65 M 0.001 0.001 0.001 0.999 0.001 0.001 66 R 0.001 0.001 0.001 0.999 0.001 0.001 67 K 0.001 0.001 0.001 0.999 0.001 0.001 68 I 0.001 0.001 0.001 0.999 0.001 0.001 69 E 0.001 0.001 0.001 0.999 0.001 0.001 70 A 0.001 0.001 0.001 0.999 0.001 0.001 71 K 0.001 0.001 0.001 0.997 0.001 0.001 72 V 0.001 0.001 0.002 0.996 0.001 0.001 73 R 0.001 0.001 0.004 0.991 0.003 0.002 74 S 0.001 0.001 0.005 0.986 0.005 0.004 75 R 0.001 0.001 0.006 0.962 0.011 0.019 76 A 0.001 0.001 0.007 0.933 0.022 0.037 77 A 0.005 0.003 0.030 0.782 0.080 0.100 78 K 0.010 0.001 0.049 0.570 0.160 0.210 79 A 0.047 0.007 0.060 0.307 0.200 0.379 80 V 0.048 0.020 0.013 0.192 0.152 0.576 81 T 0.019 0.007 0.001 0.065 0.045 0.863 82 E 0.001 0.001 0.003 0.989 0.002 0.005 83 Q 0.001 0.001 0.003 0.994 0.001 0.001 84 E 0.001 0.001 0.002 0.995 0.002 0.001 85 L 0.001 0.001 0.001 0.995 0.001 0.002 86 T 0.001 0.001 0.001 0.995 0.001 0.002 87 S 0.001 0.001 0.004 0.983 0.007 0.004 88 L 0.002 0.001 0.007 0.964 0.016 0.010 89 L 0.014 0.003 0.031 0.848 0.089 0.015 90 Q 0.026 0.001 0.068 0.722 0.145 0.037 91 S 0.070 0.003 0.059 0.383 0.212 0.274 92 L 0.220 0.007 0.010 0.044 0.190 0.528 93 T 0.479 0.002 0.001 0.003 0.043 0.471 94 L 0.917 0.002 0.001 0.001 0.010 0.069 95 R 0.966 0.001 0.001 0.001 0.006 0.028 96 V 0.979 0.001 0.001 0.001 0.003 0.018 97 D 0.973 0.001 0.001 0.001 0.005 0.020 98 V 0.923 0.002 0.001 0.001 0.012 0.062 99 S 0.654 0.005 0.001 0.001 0.091 0.248 100 M 0.233 0.011 0.006 0.003 0.210 0.538 101 E 0.117 0.010 0.010 0.007 0.312 0.544 102 E 0.079 0.009 0.026 0.019 0.336 0.530