# TARGET T0300 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0300.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.88843 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.005 0.957 0.001 0.003 0.012 0.001 0.001 0.001 0.010 0.004 0.003 0.006 2 A 0.001 0.015 0.804 0.001 0.042 0.044 0.001 0.001 0.001 0.028 0.052 0.002 0.011 3 S 0.001 0.005 0.453 0.005 0.062 0.050 0.001 0.001 0.001 0.190 0.224 0.005 0.004 4 K 0.001 0.015 0.509 0.001 0.034 0.045 0.001 0.001 0.002 0.271 0.116 0.002 0.006 5 K 0.001 0.008 0.800 0.001 0.002 0.005 0.001 0.001 0.002 0.169 0.010 0.002 0.001 6 P 0.001 0.015 0.324 0.001 0.015 0.013 0.001 0.001 0.001 0.137 0.492 0.001 0.002 7 D 0.001 0.008 0.158 0.002 0.015 0.006 0.001 0.001 0.001 0.100 0.709 0.001 0.001 8 K 0.001 0.060 0.644 0.001 0.005 0.005 0.001 0.001 0.003 0.248 0.018 0.010 0.005 9 T 0.001 0.061 0.848 0.001 0.001 0.009 0.001 0.001 0.005 0.047 0.002 0.001 0.026 10 Y 0.001 0.001 0.005 0.001 0.005 0.982 0.001 0.001 0.001 0.002 0.006 0.001 0.001 11 E 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 E 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 M 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 K 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 16 E 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 17 V 0.001 0.001 0.002 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 18 E 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 19 R 0.001 0.001 0.001 0.001 0.001 0.980 0.001 0.001 0.001 0.002 0.016 0.001 0.001 20 L 0.001 0.001 0.006 0.001 0.001 0.984 0.001 0.001 0.001 0.002 0.007 0.001 0.001 21 K 0.001 0.001 0.004 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.005 0.001 0.001 22 L 0.001 0.001 0.004 0.001 0.001 0.986 0.001 0.001 0.001 0.002 0.006 0.001 0.001 23 E 0.001 0.001 0.004 0.001 0.001 0.980 0.001 0.001 0.001 0.003 0.012 0.001 0.001 24 N 0.001 0.001 0.010 0.001 0.001 0.977 0.001 0.001 0.001 0.004 0.007 0.001 0.001 25 K 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 26 T 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.009 0.001 0.001 27 L 0.001 0.001 0.001 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.009 0.001 0.001 28 K 0.001 0.001 0.004 0.001 0.003 0.985 0.001 0.001 0.001 0.002 0.006 0.001 0.001 29 Q 0.001 0.001 0.007 0.001 0.009 0.965 0.001 0.001 0.001 0.003 0.016 0.001 0.001 30 K 0.001 0.001 0.008 0.001 0.006 0.961 0.001 0.001 0.001 0.004 0.018 0.001 0.001 31 V 0.001 0.002 0.022 0.001 0.007 0.935 0.001 0.001 0.001 0.011 0.019 0.001 0.001 32 K 0.001 0.006 0.035 0.001 0.014 0.820 0.001 0.001 0.003 0.024 0.090 0.002 0.004 33 S 0.001 0.003 0.062 0.001 0.021 0.616 0.001 0.001 0.002 0.038 0.251 0.003 0.003 34 S 0.001 0.005 0.248 0.001 0.031 0.219 0.001 0.001 0.002 0.161 0.327 0.001 0.004 35 G 0.001 0.010 0.312 0.001 0.023 0.065 0.001 0.001 0.003 0.278 0.301 0.004 0.003 36 A 0.001 0.023 0.593 0.001 0.011 0.019 0.001 0.001 0.009 0.234 0.088 0.004 0.015 37 V 0.001 0.092 0.656 0.001 0.005 0.009 0.001 0.001 0.012 0.169 0.028 0.010 0.014 38 S 0.001 0.027 0.850 0.001 0.003 0.003 0.001 0.001 0.004 0.084 0.015 0.004 0.008 39 S 0.001 0.011 0.406 0.002 0.048 0.030 0.001 0.001 0.002 0.183 0.312 0.001 0.004 40 D 0.001 0.006 0.253 0.001 0.082 0.038 0.001 0.001 0.001 0.160 0.456 0.002 0.001 41 D 0.001 0.008 0.384 0.002 0.146 0.055 0.001 0.001 0.001 0.236 0.162 0.001 0.005 42 S 0.001 0.025 0.370 0.002 0.112 0.064 0.001 0.001 0.007 0.254 0.140 0.011 0.015 43 I 0.005 0.121 0.404 0.001 0.054 0.053 0.003 0.001 0.022 0.113 0.114 0.016 0.095 44 L 0.003 0.129 0.537 0.002 0.012 0.040 0.001 0.001 0.011 0.166 0.039 0.038 0.022 45 T 0.001 0.014 0.844 0.001 0.002 0.029 0.001 0.001 0.002 0.073 0.004 0.003 0.028 46 A 0.001 0.001 0.006 0.001 0.028 0.931 0.001 0.001 0.001 0.004 0.029 0.001 0.001 47 A 0.001 0.001 0.005 0.001 0.030 0.924 0.001 0.001 0.001 0.004 0.036 0.001 0.001 48 K 0.001 0.001 0.006 0.001 0.039 0.931 0.001 0.001 0.001 0.004 0.017 0.001 0.001 49 R 0.001 0.001 0.026 0.001 0.009 0.942 0.001 0.001 0.001 0.007 0.008 0.001 0.002 50 E 0.002 0.001 0.019 0.004 0.008 0.922 0.001 0.002 0.005 0.012 0.017 0.002 0.005 51 S 0.003 0.001 0.011 0.001 0.004 0.928 0.003 0.005 0.008 0.013 0.016 0.002 0.005 52 I 0.004 0.002 0.015 0.001 0.003 0.939 0.004 0.003 0.008 0.004 0.012 0.003 0.003 53 I 0.002 0.003 0.027 0.001 0.004 0.914 0.002 0.003 0.014 0.006 0.017 0.003 0.005 54 V 0.002 0.001 0.039 0.001 0.006 0.888 0.001 0.003 0.008 0.014 0.030 0.003 0.004 55 S 0.004 0.001 0.045 0.001 0.016 0.823 0.001 0.001 0.005 0.032 0.062 0.004 0.005 56 S 0.001 0.002 0.032 0.001 0.025 0.839 0.001 0.001 0.003 0.021 0.070 0.002 0.003 57 S 0.001 0.002 0.049 0.001 0.031 0.827 0.001 0.001 0.003 0.023 0.059 0.001 0.003 58 R 0.001 0.001 0.020 0.001 0.038 0.851 0.001 0.001 0.001 0.023 0.064 0.001 0.001 59 A 0.001 0.001 0.017 0.001 0.026 0.861 0.001 0.001 0.001 0.014 0.078 0.001 0.001 60 L 0.001 0.001 0.018 0.001 0.021 0.883 0.001 0.001 0.001 0.011 0.064 0.001 0.001 61 G 0.001 0.001 0.019 0.001 0.007 0.944 0.001 0.001 0.001 0.012 0.017 0.001 0.001 62 A 0.001 0.001 0.003 0.001 0.003 0.985 0.001 0.001 0.001 0.002 0.007 0.001 0.001 63 V 0.001 0.001 0.002 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.006 0.001 0.001 64 A 0.001 0.001 0.003 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.005 0.001 0.001 65 M 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 66 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 67 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 68 I 0.001 0.001 0.002 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 69 E 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 70 A 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.006 0.001 0.001 71 K 0.001 0.001 0.004 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.007 0.001 0.001 72 V 0.001 0.001 0.009 0.001 0.001 0.975 0.001 0.001 0.001 0.004 0.009 0.001 0.001 73 R 0.001 0.001 0.024 0.001 0.005 0.933 0.001 0.001 0.001 0.010 0.022 0.001 0.002 74 S 0.001 0.001 0.024 0.001 0.014 0.851 0.001 0.001 0.001 0.018 0.085 0.002 0.004 75 R 0.001 0.001 0.037 0.001 0.025 0.758 0.001 0.001 0.001 0.021 0.153 0.001 0.002 76 A 0.001 0.005 0.121 0.001 0.039 0.639 0.001 0.001 0.004 0.060 0.124 0.001 0.006 77 A 0.001 0.007 0.268 0.003 0.050 0.402 0.001 0.001 0.009 0.157 0.090 0.007 0.007 78 K 0.001 0.004 0.265 0.004 0.063 0.303 0.001 0.001 0.015 0.150 0.167 0.006 0.022 79 A 0.002 0.013 0.583 0.001 0.033 0.147 0.001 0.001 0.024 0.057 0.103 0.007 0.029 80 V 0.001 0.076 0.612 0.001 0.005 0.059 0.001 0.001 0.033 0.136 0.028 0.035 0.014 81 T 0.001 0.012 0.810 0.001 0.001 0.041 0.001 0.001 0.007 0.103 0.004 0.001 0.020 82 E 0.001 0.001 0.001 0.001 0.005 0.982 0.001 0.001 0.001 0.001 0.010 0.001 0.001 83 Q 0.001 0.001 0.001 0.001 0.005 0.980 0.001 0.001 0.001 0.001 0.012 0.001 0.001 84 E 0.001 0.001 0.001 0.001 0.005 0.989 0.001 0.001 0.001 0.001 0.004 0.001 0.001 85 L 0.001 0.001 0.003 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 T 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 S 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 88 L 0.001 0.001 0.001 0.001 0.001 0.987 0.001 0.001 0.001 0.001 0.010 0.001 0.001 89 L 0.001 0.001 0.003 0.001 0.002 0.965 0.001 0.001 0.001 0.003 0.027 0.001 0.001 90 Q 0.001 0.001 0.007 0.001 0.014 0.657 0.001 0.001 0.001 0.010 0.311 0.001 0.001 91 S 0.001 0.001 0.037 0.001 0.021 0.241 0.001 0.001 0.001 0.063 0.635 0.001 0.001 92 L 0.001 0.002 0.732 0.002 0.012 0.034 0.001 0.001 0.015 0.149 0.040 0.004 0.007 93 T 0.006 0.007 0.375 0.049 0.012 0.016 0.013 0.018 0.156 0.249 0.020 0.026 0.052 94 L 0.053 0.001 0.051 0.004 0.002 0.004 0.139 0.191 0.420 0.021 0.002 0.063 0.048 95 R 0.191 0.001 0.014 0.001 0.001 0.001 0.180 0.284 0.256 0.002 0.001 0.020 0.049 96 V 0.238 0.001 0.067 0.009 0.001 0.001 0.192 0.103 0.291 0.005 0.001 0.053 0.037 97 D 0.156 0.002 0.097 0.007 0.001 0.001 0.115 0.081 0.389 0.008 0.001 0.090 0.054 98 V 0.195 0.005 0.245 0.011 0.001 0.001 0.081 0.039 0.149 0.022 0.007 0.033 0.212 99 S 0.074 0.020 0.405 0.005 0.004 0.002 0.024 0.008 0.121 0.043 0.017 0.187 0.089 100 M 0.012 0.014 0.438 0.010 0.066 0.013 0.006 0.002 0.037 0.136 0.087 0.020 0.160 101 E 0.003 0.005 0.659 0.008 0.037 0.007 0.001 0.001 0.014 0.130 0.067 0.046 0.023 102 E 0.001 0.004 0.875 0.003 0.027 0.005 0.001 0.001 0.003 0.046 0.013 0.003 0.021