# TARGET T0300 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0300.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.88843 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.187 0.213 0.315 0.083 0.097 0.017 0.030 0.018 0.023 0.016 0.001 2 A 0.283 0.139 0.389 0.093 0.024 0.031 0.012 0.007 0.014 0.006 0.002 3 S 0.171 0.268 0.295 0.084 0.096 0.023 0.022 0.007 0.021 0.012 0.001 4 K 0.189 0.124 0.392 0.146 0.025 0.063 0.021 0.004 0.026 0.004 0.006 5 K 0.018 0.177 0.652 0.003 0.021 0.019 0.009 0.001 0.099 0.001 0.001 6 P 0.204 0.005 0.716 0.015 0.001 0.032 0.001 0.001 0.001 0.001 0.025 7 D 0.102 0.139 0.207 0.233 0.092 0.047 0.071 0.067 0.028 0.013 0.001 8 K 0.061 0.251 0.390 0.104 0.101 0.042 0.031 0.005 0.012 0.002 0.001 9 T 0.007 0.194 0.632 0.005 0.099 0.038 0.001 0.001 0.019 0.004 0.001 10 Y 0.993 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 E 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 E 0.994 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 M 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 V 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 E 0.972 0.001 0.001 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 V 0.985 0.001 0.005 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 E 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 R 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 L 0.990 0.001 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 K 0.993 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 L 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 E 0.983 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 N 0.988 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 K 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 T 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 L 0.971 0.001 0.001 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 K 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 Q 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 K 0.981 0.001 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 V 0.900 0.004 0.008 0.083 0.001 0.002 0.001 0.001 0.002 0.001 0.001 32 K 0.881 0.014 0.027 0.058 0.002 0.007 0.008 0.001 0.002 0.001 0.001 33 S 0.678 0.040 0.049 0.199 0.011 0.007 0.007 0.003 0.006 0.001 0.001 34 S 0.281 0.050 0.124 0.439 0.044 0.007 0.017 0.013 0.017 0.007 0.001 35 G 0.057 0.010 0.074 0.021 0.082 0.003 0.074 0.378 0.005 0.296 0.001 36 A 0.207 0.123 0.444 0.103 0.043 0.043 0.010 0.004 0.011 0.004 0.008 37 V 0.152 0.242 0.424 0.075 0.027 0.052 0.003 0.002 0.019 0.001 0.001 38 S 0.107 0.224 0.401 0.088 0.055 0.064 0.009 0.003 0.042 0.006 0.001 39 S 0.295 0.118 0.349 0.096 0.068 0.025 0.010 0.005 0.022 0.012 0.002 40 D 0.318 0.032 0.131 0.344 0.025 0.050 0.045 0.023 0.020 0.009 0.003 41 D 0.157 0.087 0.317 0.272 0.032 0.048 0.053 0.011 0.021 0.002 0.001 42 S 0.364 0.160 0.295 0.086 0.026 0.019 0.022 0.010 0.015 0.002 0.001 43 I 0.218 0.208 0.344 0.120 0.017 0.045 0.014 0.002 0.030 0.001 0.001 44 L 0.043 0.255 0.544 0.057 0.027 0.059 0.004 0.001 0.009 0.001 0.001 45 T 0.008 0.324 0.432 0.008 0.153 0.031 0.001 0.001 0.041 0.003 0.001 46 A 0.975 0.002 0.013 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 A 0.969 0.001 0.005 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 K 0.837 0.003 0.007 0.148 0.001 0.002 0.001 0.001 0.001 0.001 0.001 49 R 0.845 0.026 0.069 0.037 0.003 0.005 0.010 0.002 0.002 0.001 0.001 50 E 0.944 0.013 0.020 0.014 0.002 0.003 0.003 0.001 0.001 0.001 0.001 51 S 0.947 0.020 0.014 0.010 0.005 0.001 0.001 0.001 0.001 0.001 0.001 52 I 0.941 0.030 0.011 0.010 0.002 0.003 0.001 0.001 0.003 0.001 0.001 53 I 0.946 0.019 0.015 0.010 0.001 0.006 0.001 0.001 0.003 0.001 0.001 54 V 0.949 0.018 0.010 0.017 0.002 0.002 0.001 0.001 0.001 0.001 0.001 55 S 0.953 0.009 0.010 0.014 0.006 0.003 0.003 0.001 0.001 0.001 0.001 56 S 0.916 0.006 0.006 0.060 0.003 0.004 0.001 0.001 0.002 0.001 0.001 57 S 0.959 0.003 0.004 0.029 0.001 0.002 0.001 0.001 0.001 0.001 0.001 58 R 0.975 0.002 0.003 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 A 0.980 0.001 0.002 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 L 0.958 0.001 0.001 0.039 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 G 0.992 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 A 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 V 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 A 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 M 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 R 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 K 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 I 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 E 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 A 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 K 0.977 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 V 0.979 0.003 0.003 0.011 0.001 0.002 0.001 0.001 0.001 0.001 0.001 73 R 0.978 0.004 0.004 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 S 0.969 0.003 0.005 0.019 0.002 0.001 0.001 0.001 0.001 0.001 0.001 75 R 0.852 0.006 0.010 0.120 0.002 0.003 0.003 0.001 0.003 0.001 0.001 76 A 0.818 0.015 0.029 0.118 0.002 0.006 0.003 0.001 0.006 0.001 0.001 77 A 0.682 0.037 0.165 0.072 0.012 0.010 0.009 0.003 0.006 0.005 0.001 78 K 0.722 0.014 0.156 0.079 0.005 0.009 0.007 0.004 0.002 0.001 0.001 79 A 0.542 0.063 0.159 0.156 0.022 0.021 0.017 0.010 0.007 0.002 0.001 80 V 0.314 0.242 0.241 0.120 0.036 0.029 0.006 0.001 0.009 0.001 0.001 81 T 0.064 0.267 0.394 0.024 0.102 0.066 0.002 0.001 0.069 0.011 0.001 82 E 0.995 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 Q 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 E 0.986 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 L 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 T 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 S 0.993 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 L 0.975 0.001 0.001 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 L 0.911 0.004 0.011 0.067 0.001 0.002 0.002 0.001 0.001 0.001 0.001 90 Q 0.917 0.005 0.026 0.048 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 S 0.092 0.004 0.007 0.868 0.003 0.003 0.011 0.008 0.003 0.001 0.001 92 L 0.003 0.232 0.646 0.012 0.018 0.048 0.008 0.001 0.032 0.001 0.001 93 T 0.020 0.747 0.131 0.024 0.043 0.019 0.003 0.001 0.011 0.001 0.001 94 L 0.001 0.884 0.074 0.001 0.025 0.006 0.001 0.001 0.009 0.001 0.001 95 R 0.002 0.739 0.179 0.001 0.009 0.040 0.001 0.001 0.030 0.001 0.001 96 V 0.002 0.895 0.043 0.001 0.022 0.014 0.001 0.001 0.022 0.001 0.001 97 D 0.005 0.346 0.407 0.002 0.006 0.185 0.002 0.001 0.044 0.001 0.002 98 V 0.027 0.683 0.148 0.033 0.045 0.033 0.001 0.001 0.028 0.001 0.001 99 S 0.020 0.362 0.222 0.015 0.300 0.041 0.006 0.001 0.024 0.009 0.001 100 M 0.284 0.194 0.227 0.188 0.034 0.033 0.006 0.003 0.025 0.003 0.002 101 E 0.183 0.164 0.447 0.054 0.047 0.033 0.016 0.006 0.038 0.011 0.001 102 E 0.576 0.039 0.159 0.097 0.019 0.020 0.040 0.020 0.012 0.014 0.003