# List of top-scoring protein chains for T0300.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1debA 54 4.85e-02 1debA h.1.18.1 45660 1u2uA 32 2.91e-01 1hkkA 364 6.80e-01 c.1.8.5,d.26.3.1 90634,90635 1hkmA 365 6.82e-01 c.1.8.5,d.26.3.1 90636,90637 1p9iA 31 6.82e-01 h.1.10.1 94390 1lg2A 365 6.83e-01 c.1.8.5,d.26.3.1 77950,77951 1guvA 366 6.87e-01 c.1.8.5,d.26.3.1 83333,83334 1wb0A 445 9.92e-01 1culA 217 1.53e+00 1azsA d.58.29.1 39417 1azsA 220 1.53e+00 1azsA d.58.29.1 39416 1cs4A 225 1.55e+00 1azsA d.58.29.1 39418 1q8kA 308 1.94e+00 b.40.4.5,d.58.51.1 104556,104557 1itxA 419 2.74e+00 c.1.8.5,d.26.3.1 71425,71426 1vf8A 377 3.48e+00 1fmhA 33 4.26e+00 1fmhB k.6.1.1 46409 1ns5A 155 6.46e+00 c.116.1.3 80705 1u2uB 32 6.56e+00 1olmA 403 6.99e+00 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2az4A 429 7.35e+00 1vqoG 348 7.45e+00 1olmE 403 7.70e+00 a.5.3.1,b.132.1.1,c.13.1.1 104014,104015,104016 1eg3A 261 8.30e+00 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1md7A 328 8.56e+00 b.47.1.2,g.18.1.1 91243,91244 1md8A 329 8.64e+00 b.47.1.2,g.18.1.1 91245,91246 1zhjA 297 8.65e+00 1zizA 293 9.05e+00 1r82A 283 9.22e+00 c.68.1.9 97217 1lzjA 292 9.37e+00 c.68.1.9 74352 1wt1A 292 9.43e+00 1zi4A 294 9.45e+00 1zi5A 293 9.86e+00 1r7yA 283 1.00e+01 c.68.1.9 97214 1lziA 292 1.02e+01 c.68.1.9 74351 1og6A 298 1.11e+01 c.1.7.1 86984 1gpzA 399 1.12e+01 b.47.1.2,g.18.1.1,g.18.1.1 70302,70303,70304 1ur3M 319 1.14e+01 c.1.7.1 99806 1q35A 320 1.19e+01 c.94.1.1 95661 1lsi 66 1.34e+01 3ebx g.7.1.1 44422 1tmzA 32 1.59e+01 1tmzA k.1.1.1 46376 1yocA 147 1.62e+01 1p4wA 99 1.68e+01 a.4.6.2 87783 1dofA 403 1.68e+01 1c3cA a.127.1.1 19429 1h67A 108 1.85e+01 a.40.1.1 65643 1s1cX 71 2.01e+01 h.1.27.1 98342 2cw9A 194 2.01e+01 2hlpA 303 2.02e+01 1ceqA c.2.1.5,d.162.1.1 30141,42108 1p65A 73 2.02e+01 d.254.1.1 94156 1mruA 311 2.14e+01 d.144.1.7 79425 2bskB 90 2.14e+01 2mtaC 147 2.15e+01 2mtaC a.3.1.1 15908 1mg2D 155 2.21e+01 a.3.1.1 79062 1sb2A 133 2.40e+01 1v5fA 589 2.44e+01 1t6fA 37 2.46e+01 h.1.28.1 106565 1v5eA 590 2.49e+01 1i8lA 208 2.61e+01 1dr9A b.1.1.1,b.1.1.3 61970,61971 1dr9A 201 2.61e+01 1dr9A b.1.1.1,b.1.1.3 19762,21684 1wt3A 292 2.68e+01 1jalA 363 2.71e+01 c.37.1.8,d.15.10.2 84138,84139 1hr0W 71 2.77e+01 1ah9 b.40.4.5 25329 1kfwA 435 2.86e+01 c.1.8.5,d.26.3.1 77376,77377 2g0tA 350 2.88e+01 1wszA 292 2.90e+01 1xvxA 312 2.91e+01 1t5bA 201 2.92e+01 c.23.5.3 106433 1mvwB 145 2.97e+01 i.15.1.1 79524 1m8pA 573 3.00e+01 b.122.1.3,c.26.1.5,c.37.1.15 78777,78778,78779 1i2dA 573 3.04e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 61556,61557,61558 1t01A 255 3.10e+01 a.24.9.1,a.24.9.1 106188,106189 1wnoA 395 3.26e+01 1v4bA 200 3.29e+01 1zvzA 279 3.29e+01 1xvyA 309 3.31e+01 1u6hA 280 3.31e+01 2mysB 166 3.36e+01 1wdcB a.39.1.5 17308 1w9pA 433 3.43e+01 1tikA 213 3.45e+01 c.23.5.3 107003 1go4E 100 3.47e+01 h.1.22.1 70296 1tp4A 97 3.53e+01 a.189.1.1 107183 1jmtB 28 3.57e+01 1rkeA 262 3.65e+01 a.24.9.1,a.24.9.1 97608,97609 1ydiA 263 3.65e+01 1syqA 264 3.66e+01 a.24.9.1,a.24.9.1 106124,106125 1nwbA 124 3.81e+01 b.124.1.1 86296 1hruA 188 3.84e+01 1hruA d.115.1.1 40926 2aucA 126 3.86e+01 1eg0D 146 3.87e+01 1rss i.1.1.1 45810 1fkaG 151 3.91e+01 i.1.1.3 45850 1n32G 155 3.95e+01 a.75.1.1 79876 2etlA 228 3.95e+01 1fjgG 156 3.96e+01 1rss a.75.1.1 18394 1x18F 154 3.98e+01 2bflA 227 4.10e+01 2aw4G 176 4.11e+01 1hbxA 92 4.19e+01 1mnmA d.88.1.1 60930 1rss 151 4.28e+01 1rss a.75.1.1 18392 2fazA 78 4.30e+01 2aw4X 63 4.41e+01 1ci6B 63 4.49e+01 1ci6B h.1.3.1 45549 1lp1A 58 4.50e+01 a.8.1.1 84664 1mzpA 217 4.51e+01 e.24.1.1 79710 1ce9A 34 4.58e+01 1ce9C h.1.3.1 45483 1k6oB 103 4.59e+01 d.88.1.1 68227 1bp1 456 4.74e+01 1bp1 d.83.1.1,d.83.1.1 40026,40027 1yiqA 689 4.88e+01 1mknA 59 4.98e+01 1mknA g.5.1.1 44383 1wguA 136 5.00e+01 1ds6B 180 5.25e+01 1rhoA b.1.18.8 21898 1h89A 64 5.31e+01 h.1.3.1 65724 1dv4G 135 5.35e+01 i.1.1.3 45876 1wlqA 83 5.40e+01 h.1.28.1 109398 2agcA 162 5.61e+01 2b8tA 223 5.68e+01 1h47A 161 5.73e+01 1gx1A 160 5.77e+01 d.79.5.1 70675 2amtA 159 5.77e+01 1ewfA 456 5.80e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1o6dA 163 5.95e+01 c.116.1.3 92567 1js8A 394 5.98e+01 a.86.1.1,b.112.1.1 67219,67220 1lp3A 519 5.99e+01 b.121.5.2 74169 1yqnA 161 5.99e+01 1xmrA 243 6.00e+01 2ghpA 292 6.01e+01 1z72A 225 6.05e+01 2a6bA 234 6.10e+01 1konA 249 6.14e+01 e.39.1.1 72823 1o6zA 303 6.39e+01 c.2.1.5,d.162.1.1 81107,81108 2a6vA 226 6.44e+01 1x1pA 212 6.46e+01 2a6xA 226 6.46e+01 1wbpA 397 6.50e+01 1uiiA 83 6.66e+01 h.1.28.1 107864 1bmc 221 6.69e+01 1a7tA d.157.1.1 42038 1io2A 213 6.82e+01 1ekeA c.55.3.1 62612 1pb6A 212 6.85e+01 a.4.1.9,a.121.1.1 88017,88018 1hleA 345 6.94e+01 1ovaA e.1.1.1 42618 1oqyA 368 7.01e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1z9bA 135 7.08e+01 1hjbA 87 7.21e+01 1hjbA h.1.3.1 61073 1mqoA 227 7.22e+01 d.157.1.1 103846 1bdfA 235 7.24e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1dtdA 303 7.30e+01 1aye c.56.5.1 33823 2bleA 367 7.30e+01 1dxkA 227 7.30e+01 1a7tA d.157.1.1 42036 1ymtA 246 7.33e+01 1xm9A 457 7.42e+01 1zjkA 403 7.47e+01 2ts1 419 7.67e+01 2ts1 c.26.1.1 31564 1r6fA 310 7.70e+01 e.46.1.1 97149 1jkw 323 7.85e+01 1jkw a.74.1.1,a.74.1.1 18356,18357 1kxu 333 7.87e+01 1jkw a.74.1.1,a.74.1.1 18358,18359 1syyA 346 7.90e+01 a.25.1.2 106126 1ytaA 180 7.98e+01 1tidB 119 8.05e+01 c.13.2.1 107000 1th8B 116 8.22e+01 c.13.2.1 106909 1zr0B 63 8.25e+01 2govA 195 8.27e+01 1h4xA 117 8.43e+01 1auz c.13.2.1 60626 1h4yA 117 8.48e+01 1auz c.13.2.1 60628 1q1gA 276 8.52e+01 c.56.2.1 95574 1wmiB 67 8.54e+01 1e5pA 151 8.62e+01 1bj7 b.60.1.1 59272 1wyrA 121 8.67e+01 1gu4A 78 8.68e+01 h.1.3.1 83317 1yf2A 425 8.69e+01 1vrvA 101 8.70e+01 1h54A 754 8.72e+01 a.102.1.4,b.30.5.3 60634,60635 1mwqA 101 8.73e+01 d.58.4.7 91481 1wjrA 127 8.81e+01 1xx9A 238 8.85e+01