# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1debA 54 8.00e-01 1debA h.1.18.1 45660 1azsA 220 1.39e+00 1azsA d.58.29.1 39416 1dtdA 303 1.98e+00 1aye c.56.5.1 33823 1ns5A 155 2.13e+00 c.116.1.3 80705 2az4A 429 2.58e+00 1y8aA 332 3.03e+00 1f45B 197 3.28e+00 1f45B a.26.1.1 59642 1kxu 333 3.85e+00 1jkw a.74.1.1,a.74.1.1 18358,18359 1sflA 238 4.16e+00 1q8bA 105 4.17e+00 d.58.4.6 96201 1kdxA 81 4.17e+00 1kdxA a.12.1.1 16375 1sb0A 87 5.07e+00 a.12.1.1 98789 2ftuA 118 6.98e+00 1tp4A 97 7.10e+00 a.189.1.1 107183 2cw9A 194 7.78e+00 1sfjA 238 7.95e+00 1whzA 70 8.75e+00 2ghpA 292 9.07e+00 1o6dA 163 9.16e+00 c.116.1.3 92567 2axpA 173 9.45e+00 1yyaA 250 9.73e+00 1ad1A 266 1.03e+01 1aj2 c.1.21.1 29668 1vl6A 388 1.07e+01 c.2.1.7,c.58.1.3 108724,108725 1ithA 141 1.14e+01 1ithA a.1.1.2 15623 1wb0A 445 1.17e+01 1uddA 226 1.27e+01 a.132.1.3 107776 1ab4 477 1.32e+01 1ab4 e.11.1.1 43251 1h4xA 117 1.32e+01 1auz c.13.2.1 60626 2gn4A 344 1.36e+01 1x75A 132 1.51e+01 1dc1A 323 1.55e+01 1dc1A c.52.1.11 33321 1hkkA 364 1.60e+01 c.1.8.5,d.26.3.1 90634,90635 2adoA 196 1.65e+01 1sesA 421 1.72e+01 1sesA a.2.7.1,d.104.1.1 15710,40710 1vf8A 377 1.81e+01 1cq3A 233 1.84e+01 1cq3A b.27.1.1 23923 2etxA 209 1.88e+01 1u00A 227 1.92e+01 1foeA 377 1.92e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1y7pA 223 1.93e+01 1mg4A 113 1.98e+01 d.15.11.1 84953 1p9iA 31 1.99e+01 h.1.10.1 94390 2cybA 323 2.00e+01 1t56A 216 2.01e+01 a.4.1.9,a.121.1.1 106428,106429 1e9lA 377 2.03e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1tidB 119 2.07e+01 c.13.2.1 107000 2a6cA 83 2.08e+01 1mwqA 101 2.17e+01 d.58.4.7 91481 1z5rA 306 2.27e+01 1ybxA 143 2.41e+01 2aucA 126 2.49e+01 1lssA 140 2.51e+01 c.2.1.9 74246 1a4iA 301 2.53e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1vrvA 101 2.61e+01 2mtaC 147 2.64e+01 2mtaC a.3.1.1 15908 1bgc 174 2.79e+01 1bgc a.26.1.1 16822 1tikA 213 2.80e+01 c.23.5.3 107003 2fggA 101 2.80e+01 1a0rP 245 2.91e+01 1b9yC c.47.1.6 33054 1a5t 334 2.93e+01 1a5t a.80.1.1,c.37.1.20 18450,32423 2bw2A 140 2.96e+01 1r4xA 275 3.03e+01 b.1.10.3,d.105.1.2 97054,97055 1ir6A 424 3.05e+01 c.107.1.2 71342 1vqoC 246 3.16e+01 2sas 185 3.25e+01 2sas a.39.1.5 17258 1e6pA 499 3.32e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1v54F 98 3.35e+01 g.41.5.3 100327 1eq1A 166 3.46e+01 a.63.1.1 64910 1s72C 246 3.48e+01 c.22.1.1 105321 1s72V 71 3.51e+01 a.2.2.1 105341 1cuoA 129 3.52e+01 1nwpA b.6.1.1 23015 1goiA 499 3.56e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1v71A 323 3.61e+01 1vkrA 125 3.61e+01 c.44.2.1 108689 1cvrA 435 3.62e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1l3iA 192 3.65e+01 c.66.1.22 77676 1fmhA 33 3.66e+01 1fmhB k.6.1.1 46409 1hruA 188 3.69e+01 1hruA d.115.1.1 40926 1j8bA 112 3.69e+01 d.222.1.1 77101 1mwmA 320 3.72e+01 c.55.1.1,c.55.1.1 79580,79581 1jj2C 246 3.72e+01 1ffkC c.22.1.1 63087 1vqoV 71 3.75e+01 1mg2D 155 3.77e+01 a.3.1.1 79062 2occF 98 3.81e+01 2occF g.41.5.3 45256 1pveA 72 3.84e+01 a.189.1.1 104322 2fcwA 109 3.85e+01 1yviA 149 3.89e+01 1t95A 240 4.07e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1js8A 394 4.11e+01 a.86.1.1,b.112.1.1 67219,67220 1bc8C 93 4.13e+01 1awcA a.4.5.21 16168 2fbqA 235 4.14e+01 1s50A 259 4.19e+01 1m12A 84 4.39e+01 a.64.1.1 84745 1x4tA 92 4.42e+01 1n35A 1267 4.42e+01 e.8.1.4 79935 1gqnA 252 4.51e+01 c.1.10.1 90514 1fm0E 150 4.53e+01 1fmaE d.41.5.1 38629 2fk8A 318 4.56e+01 1j8yF 297 4.58e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1nwwA 149 4.64e+01 d.17.4.8 86306 1i5nA 146 4.68e+01 1i5nA a.24.10.3 61805 1oqcA 125 4.75e+01 a.24.15.1 87264 1hwxA 501 4.84e+01 1hwyA c.2.1.7,c.58.1.1 30250,33898 2fazA 78 4.87e+01 1ymtA 246 4.94e+01 1h54A 754 4.96e+01 a.102.1.4,b.30.5.3 60634,60635 1hjxA 362 5.00e+01 c.1.8.5,d.26.3.1 83512,83513 1y1xA 191 5.02e+01 1jmtB 28 5.11e+01 1whuA 104 5.15e+01 1scfA 273 5.19e+01 1exzA a.26.1.2 16873 1v9dA 340 5.23e+01 a.207.1.1 100535 1nh1A 330 5.23e+01 e.45.1.1 91871 1jgsA 138 5.31e+01 a.4.5.28 66683 1bjx 110 5.35e+01 1bjx c.47.1.2 32774 1z0sA 278 5.39e+01 1tmzA 32 5.39e+01 1tmzA k.1.1.1 46376 1p65A 73 5.55e+01 d.254.1.1 94156 1tw9A 206 5.62e+01 a.45.1.1,c.47.1.5 107381,107382 1rypH 205 5.62e+01 d.153.1.4 41876 2f6kA 307 5.63e+01 1st9A 143 5.69e+01 c.47.1.10 98987 1lj2A 110 5.71e+01 h.1.13.2 73926 1kgsA 225 5.78e+01 a.4.6.1,c.23.1.1 68596,68597 1j6rA 214 5.81e+01 d.173.1.2 71598 1j8mF 297 5.81e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1qfeA 252 5.82e+01 1qfeA c.1.10.1 29167 1lxjA 104 5.86e+01 d.58.48.1 84736 1m1nA 491 5.87e+01 c.92.2.3 78417 1vjzA 341 5.95e+01 c.1.8.3 100838 1hc7A 477 6.01e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1gq6A 313 6.01e+01 c.42.1.1 70341 1itxA 419 6.07e+01 c.1.8.5,d.26.3.1 71425,71426 1ug3A 339 6.09e+01 1ad4A 266 6.12e+01 1aj2 c.1.21.1 29670 2f4mB 61 6.18e+01 1jj2U 70 6.19e+01 1ffkS a.2.2.1 63106 2fqxA 318 6.26e+01 119l 164 6.29e+01 1l92 d.2.1.3 36622 1gxuA 91 6.38e+01 d.58.10.1 76378 1tr0A 108 6.41e+01 d.58.4.4 107261 2f9sA 151 6.42e+01 1smlA 269 6.45e+01 1smlA d.157.1.1 42053 1ihjA 98 6.48e+01 1pdr b.36.1.1 62382 2gjlA 328 6.51e+01 1owqA 361 6.53e+01 c.1.8.5,d.26.3.1 104041,104042 1f5vA 240 6.58e+01 1bkjA d.90.1.1 40255 1ihoA 283 6.61e+01 1ihoA c.26.1.4 62390 2aioA 269 6.61e+01 2btzA 394 6.63e+01 1oy3D 282 6.73e+01 d.211.1.1 87554 1lzjA 292 6.74e+01 c.68.1.9 74352 1yub 245 6.74e+01 2ercA c.66.1.24 34219 1pueE 89 6.75e+01 1awcA a.4.5.21 16165 1a4pA 96 6.78e+01 1b4cA a.39.1.2 17176 2axoA 270 6.84e+01 1b71A 191 6.89e+01 1ryt a.25.1.1,g.41.5.1 16647,45246 1suwA 249 6.99e+01 e.52.1.1 106027 1i5pA 633 7.04e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1qo7A 394 7.05e+01 1qo7A c.69.1.11 34697 1td6A 306 7.15e+01 1lu4A 136 7.25e+01 c.47.1.10 91124 1s7zA 117 7.32e+01 a.159.3.1 98715 1xxlA 239 7.40e+01 1itg 166 7.42e+01 1b9dA c.55.3.2 33661 1r4vA 171 7.44e+01 a.197.1.1 97049 1h8lA 380 7.46e+01 b.3.2.1,c.56.5.1 65737,65738 1qkmA 255 7.47e+01 3erdA a.123.1.1 19309 1zzoA 136 7.49e+01 1c4zA 358 7.50e+01 1c4zA d.148.1.1 41766 1mqvA 125 7.58e+01 a.24.3.2 79415 1ru8A 232 7.81e+01 c.26.2.1 97849 1yruB 74 7.88e+01 1qtnA 164 7.91e+01 1pauA c.17.1.1 30999 1mijA 152 7.98e+01 a.4.1.1 79150 1reqB 637 8.01e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1pvgA 418 8.13e+01 d.14.1.3,d.122.1.2 95161,95162 1p36A 164 8.17e+01 d.2.1.3 93978 1h5oA 42 8.20e+01 g.9.1.2 83484 1ja9A 274 8.21e+01 c.2.1.2 62817 1pt6A 213 8.24e+01 c.62.1.1 95091 1ig5A 75 8.28e+01 4icb a.39.1.1 62363 1aisB 200 8.28e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1gal 583 8.34e+01 1gpeA c.3.1.2,d.16.1.1 30386,37950 2ezh 75 8.37e+01 2ezh a.4.1.2 16029 1xpxA 163 8.40e+01 1di0A 158 8.46e+01 1di0A c.16.1.1 30957 1r9cA 139 8.47e+01 d.32.1.2 97255 2ez3A 302 8.52e+01 1vh6A 145 8.57e+01 a.24.19.1 100644 1ryt 190 8.77e+01 1ryt a.25.1.1,g.41.5.1 16646,45245 1ckeA 227 8.77e+01 1ckeA c.37.1.1 31846 1vp7A 100 8.79e+01 2c1iA 431 8.81e+01 1bouA 139 8.83e+01 1bouA a.88.1.1 18521 1s5pA 235 8.84e+01 c.31.1.5 98569 1zw0A 66 8.84e+01 1a8p 258 8.91e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1pbtA 244 8.91e+01 c.124.1.1 94416 1t6fA 37 8.92e+01 h.1.28.1 106565 1sx7A 164 8.93e+01 1cf2O 337 8.97e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909