Best Alignments for T0299

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1atg/T0299-1atg-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1atg/T0299-1atg-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4157e+001.71e-06 1atg c.94.1.1
1qapA/T0299-1qapA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qapA/T0299-1qapA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.0976e+002.86e-05 1qpoA c.1.17.1
d.41.2.1
1prxB/T0299-1prxB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1prxB/T0299-1prxB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.2115e+001.19e-12 1prxA c.47.1.10
1xzoA/T0299-1xzoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xzoA/T0299-1xzoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.3395e+001.96e-08
1i6wA/T0299-1i6wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1i6wA/T0299-1i6wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0862e+019.05e-08 1i6wA c.69.1.18
1vjrA/T0299-1vjrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vjrA/T0299-1vjrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1143e+015.79e-13 c.108.1.14
1z5oA/T0299-1z5oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z5oA/T0299-1z5oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1190e+012.29e-07
1yqgA/T0299-1yqgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yqgA/T0299-1yqgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2361e+013.72e-10
1z5nA/T0299-1z5nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z5nA/T0299-1z5nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2903e+013.36e-07
1k68A/T0299-1k68A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1k68A/T0299-1k68A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7099e+014.35e-07 c.23.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001