# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1atg 231 1.13e-01 1atg c.94.1.1 35834 1tib 269 9.70e-01 3tgl c.69.1.17 34738 1yqgA 263 9.72e-01 1ap8 213 1.02e+00 1ap8 d.86.1.1 40151 1qapA 296 1.80e+00 1qpoA c.1.17.1,d.41.2.1 29559,38595 1prxA 224 1.93e+00 1prxA c.47.1.10 33076 1prxB 224 2.85e+00 1prxA c.47.1.10 33077 1gt6A 269 3.36e+00 c.69.1.17 76342 1rcuA 195 3.54e+00 c.129.1.1 97295 1i6wA 181 4.60e+00 1i6wA c.69.1.18 61859 2ajrA 331 4.76e+00 1ispA 181 4.76e+00 c.69.1.18 76778 1wlsA 328 5.37e+00 1skyE 473 5.85e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18314,26479,32359 1dcfA 136 5.96e+00 1dcfA c.23.1.2 31124 1xocA 520 6.14e+00 1v72A 356 6.62e+00 1fjeB 175 6.78e+00 1fj7A d.58.7.1,d.58.7.1 39210,39211 1fo5A 85 6.92e+00 1fo5A c.47.1.1 59922 1zr6A 503 8.12e+00 1uarA 285 8.30e+00 c.46.1.2,c.46.1.2 107762,107763 1ywqA 200 8.91e+00 1c7gA 456 9.45e+00 c.67.1.2 90415 1x9iA 302 9.58e+00 1k9uA 78 9.78e+00 a.39.1.10 84348 1tzbA 302 9.84e+00 c.80.1.1 107470 1xccA 220 1.08e+01 1t6nA 220 1.15e+01 c.37.1.19 106576 1qwkA 317 1.16e+01 c.1.7.1 96482 1ys7A 233 1.30e+01 1amf 233 1.34e+01 1wod c.94.1.1 35833 1zn6A 227 1.34e+01 1jetA 517 1.36e+01 1jevA c.94.1.1 35718 2olbA 517 1.37e+01 1jevA c.94.1.1 35721 1jevA 517 1.40e+01 1jevA c.94.1.1 35720 1iugA 352 1.65e+01 c.67.1.3 90699 1xu9A 286 1.70e+01 1b26A 416 1.73e+01 1hwyA c.2.1.7,c.58.1.1 30232,33880 1v25A 541 1.74e+01 e.23.1.1 108275 2dcnA 311 1.75e+01 1i19A 561 1.77e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1b3bA 415 1.88e+01 1hwyA c.2.1.7,c.58.1.1 30244,33892 2a10A 125 1.90e+01 1i3cA 149 1.96e+01 c.23.1.1 71112 1fp1D 372 1.97e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1u6mA 199 1.98e+01 1o4sA 389 2.05e+01 c.67.1.1 86620 2bvfA 459 2.11e+01 1u5tB 169 2.12e+01 a.4.5.54,a.4.5.54 107686,107687 1xezA 721 2.13e+01 1xseA 295 2.15e+01 1vjrA 271 2.17e+01 c.108.1.14 100832 1cydA 244 2.17e+01 1cydA c.2.1.2 29825 1wod 233 2.20e+01 1wod c.94.1.1 35832 1ey2A 471 2.25e+01 1ey2A b.82.1.4 28116 1k68A 140 2.27e+01 c.23.1.1 90943 1eybA 471 2.35e+01 1ey2A b.82.1.4 28115 1g6oA 330 2.36e+01 1g6oA c.37.1.11 32430 1im4A 221 2.37e+01 e.8.1.7 62581 1ad3A 452 2.37e+01 1ad3A c.82.1.1 35335 1bpwA 503 2.39e+01 1bpwA c.82.1.1 35365 1xg9A 260 2.45e+01 1zghA 260 2.45e+01 1a4sA 503 2.51e+01 1bpwA c.82.1.1 35361 1rg9A 383 2.53e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1wmaA 276 2.55e+01 1q35A 320 2.56e+01 c.94.1.1 95661 1cqmA 101 2.58e+01 1ris d.58.14.1 39321 1l9fA 389 2.65e+01 c.3.1.2,d.16.1.3 73716,73717 1el5A 389 2.66e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1neeA 138 2.67e+01 d.241.1.1,g.59.1.1 91841,91842 2bgkA 278 2.69e+01 1qtqA 553 2.72e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1hu4A 288 2.82e+01 1hu4A 1n5dA 288 2.82e+01 c.2.1.2 80030 1z5oA 242 2.83e+01 1ywfA 296 2.86e+01 1vetB 125 2.89e+01 d.110.7.1 108554 1dguA 183 2.91e+01 1dguA a.39.1.5 17333 1kllA 130 2.93e+01 d.32.1.2 72720 2a2fX 325 3.04e+01 1yt8A 539 3.10e+01 1z5nA 242 3.13e+01 1aq0A 306 3.20e+01 1aq0A c.1.8.3 28842 1zavA 180 3.21e+01 1xkqA 280 3.36e+01 1skoB 130 3.42e+01 d.110.7.1 105677 1ghr 306 3.47e+01 1aq0A c.1.8.3 28844 1v4pA 157 3.49e+01 1j0aA 325 3.56e+01 c.79.1.1 83871 1sd4A 126 3.59e+01 a.4.5.39 105428 1d3uA 181 3.59e+01 1ytbA d.129.1.1,d.129.1.1 41290,41291 1jysA 242 3.64e+01 c.56.2.1 77216 1pczA 191 3.71e+01 1ytbA d.129.1.1,d.129.1.1 41292,41293 1b3mA 389 3.76e+01 1b3mA 1t5hX 504 3.76e+01 e.23.1.1 106449 1w30A 201 3.79e+01 1y7lA 316 3.95e+01 2cw8A 537 3.98e+01 1iwmA 186 4.00e+01 b.125.1.2 83758 2hgsA 474 4.01e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1i4nA 251 4.13e+01 c.1.2.4 71114 1kafA 108 4.15e+01 d.199.1.1 68372 1xg5A 279 4.18e+01 1q1lA 401 4.22e+01 d.258.1.1 95591 1y1pA 342 4.23e+01 1fpqA 372 4.27e+01 1fpqA a.4.5.29,c.66.1.12 59947,59948 1u0sA 86 4.29e+01 d.58.24.1 107565 1r5jA 337 4.31e+01 c.77.1.5 97097 1wnfA 328 4.38e+01 1eluB 390 4.39e+01 1elqA c.67.1.3 34435 1elqA 390 4.41e+01 1elqA c.67.1.3 34436 1eluA 390 4.41e+01 1elqA c.67.1.3 34434 1mdiA 105 4.50e+01 1erv c.47.1.1 32755 1w7jB 151 4.55e+01 2c3zA 222 4.71e+01 1tqyB 415 4.72e+01 c.95.1.1,c.95.1.1 107247,107248 1x6mA 196 4.73e+01 2bkkA 264 4.78e+01 5abp 306 4.81e+01 8abp c.93.1.1 35651 1xygD 359 4.83e+01 1uhnA 189 4.86e+01 a.39.1.5 99399 1fbtA 190 4.98e+01 1bif c.60.1.4 34004 1w0mA 226 4.99e+01 c.1.1.1 109027 1cznA 169 4.99e+01 1rcf c.23.5.1 31181 1ofv 169 4.99e+01 1rcf c.23.5.1 31184 1whvA 100 5.05e+01 1gz2A 142 5.08e+01 d.169.1.1 83392 1wviA 257 5.08e+01 1tlk 154 5.27e+01 1tlk b.1.1.4 21707 1j5xA 342 5.29e+01 c.80.1.1 71591 2f9sA 151 5.42e+01 1aisA 182 5.43e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1u02A 239 5.46e+01 c.108.1.15 107538 2g8lA 299 5.51e+01 1cb1 78 5.51e+01 4icb a.39.1.1 17156 1ii2A 524 5.58e+01 c.91.1.1,c.109.1.1 66146,66147 1x7dA 350 5.64e+01 1ris 101 5.70e+01 1ris d.58.14.1 39314 1ws6A 171 5.74e+01 1wy9A 147 5.74e+01 1o12A 376 5.78e+01 b.92.1.5,c.1.9.10 80758,80759 1rwxA 178 5.81e+01 1luaA 287 5.90e+01 c.2.1.7,c.58.1.4 78216,78217 2cdcA 366 5.90e+01 1gyxA 76 5.92e+01 d.80.1.1 76387 1ad4A 266 5.93e+01 1aj2 c.1.21.1 29670 1sc3A 178 5.94e+01 c.17.1.1 105416 1louA 101 6.25e+01 1ris d.58.14.1 39323 1hh1A 143 6.39e+01 1gefA c.52.1.18 61036 1xzoA 174 6.45e+01 1sheA 103 6.45e+01 d.274.1.1 105551 2bl0B 145 6.46e+01 1mho 88 6.50e+01 1b4cA a.39.1.2 17171 2b33A 140 6.58e+01 1dkiA 371 6.59e+01 1dkiA d.3.1.1 37090 2f8mA 244 6.81e+01 1h2vZ 156 6.93e+01 d.58.7.1 76595 1nonA 179 6.99e+01 c.61.1.1 103868 2cvdA 198 7.02e+01 1ad1A 266 7.13e+01 1aj2 c.1.21.1 29668 1lap 488 7.20e+01 1lam c.50.1.1,c.56.5.3 33171,33834 1lam 484 7.23e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1ujmA 342 7.26e+01 1bllE 488 7.28e+01 1lam c.50.1.1,c.56.5.3 33170,33833 1wdjA 187 7.29e+01 1o60A 292 7.36e+01 c.1.10.4 92532 1uetA 437 7.46e+01 a.160.1.3,d.218.1.7,d.58.16.2 99272,99273,99274 1aye 401 7.48e+01 1aye c.56.5.1,d.58.3.1 33824,39065 2f4iA 197 7.51e+01 1lssA 140 7.60e+01 c.2.1.9 74246 1tk1A 260 7.64e+01 d.248.1.1 107066 1e5xA 486 7.68e+01 c.79.1.1 59283 1mxb 383 7.69e+01 1mxb d.130.1.1,d.130.1.1,d.130.1.1 41329,41330,41331 1ly1A 181 7.69e+01 c.37.1.1 74334 1yptA 305 7.72e+01 1ytw c.45.1.2 32686 1ve3A 227 7.76e+01 1foeA 377 7.78e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1b57A 358 7.81e+01 1dosA c.1.10.2 29177 1gtrA 553 7.86e+01 1gtrA b.53.1.2,c.26.1.1 26939,31578 1yw3A 208 7.88e+01 1y9uA 323 7.90e+01 1hwxA 501 7.96e+01 1hwyA c.2.1.7,c.58.1.1 30250,33898 1v7oA 165 7.96e+01 d.67.1.2 100480 1pjhA 280 8.07e+01 c.14.1.3 94761 1edzA 320 8.09e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 1d6zA 727 8.12e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24394,38015,38016,40007 1kk8B 139 8.14e+01 a.39.1.5 77430 1k0fA 277 8.22e+01 c.92.2.2 71974 1s4nA 348 8.25e+01 c.68.1.16 98501 1oacA 727 8.28e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1bap 306 8.33e+01 8abp c.93.1.1 35654 1d9eA 284 8.39e+01 1d9eA c.1.10.4 29195 1st9A 143 8.50e+01 c.47.1.10 98987 1vlwA 217 8.55e+01 c.1.10.1 108868 1udiI 83 8.57e+01 1ugiA d.17.5.1 38124 8abp 306 8.61e+01 8abp c.93.1.1 35647 1y5mA 276 8.62e+01 1vyiA 112 8.63e+01 1f6kA 293 8.68e+01 1nal3 c.1.10.1 29081 1ytw 306 8.69e+01 1ytw c.45.1.2 32689 1lyvA 306 8.73e+01 c.45.1.2 74348 1lfpA 249 8.75e+01 e.39.1.1 73885 1qpoA 284 8.83e+01 1qpoA c.1.17.1,d.41.2.1 29561,38597 1o57A 291 8.91e+01 a.4.5.40,c.61.1.1 92483,92484 1ytn 306 8.93e+01 1ytw c.45.1.2 32688 1itwA 741 8.95e+01 c.77.1.2 76793