Best Alignments for T0299

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1fp1D/T0299-1fp1D-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fp1D/T0299-1fp1D-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5998e-015.69e-15 1fpqA a.4.5.29
c.66.1.12
1atg/T0299-1atg-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1atg/T0299-1atg-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2887e+008.96e-08 1atg c.94.1.1
1ccwA/T0299-1ccwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ccwA/T0299-1ccwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3971e+003.17e-14 1be1 c.23.6.1
1ispA/T0299-1ispA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ispA/T0299-1ispA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3529e+005.88e-08 c.69.1.18
1xzoA/T0299-1xzoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xzoA/T0299-1xzoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7067e+002.53e-12
1tib/T0299-1tib-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tib/T0299-1tib-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6072e+005.64e-08 3tgl c.69.1.17
1t6nA/T0299-1t6nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t6nA/T0299-1t6nA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6270e+003.49e-10 c.37.1.19
1cydA/T0299-1cydA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cydA/T0299-1cydA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.0085e+001.94e-06 1cydA c.2.1.2
1mzhA/T0299-1mzhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mzhA/T0299-1mzhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.2107e+003.36e-11 c.1.10.1
1jysA/T0299-1jysA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jysA/T0299-1jysA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5032e+008.98e-09 c.56.2.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001