# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g5cA 170 1.50e+00 1g5cA c.53.2.1 60264 1wekA 217 2.42e+00 1yuzA 202 2.73e+00 1jysA 242 3.30e+00 c.56.2.1 77216 2g8lA 299 4.50e+00 1kcfA 258 4.57e+00 a.140.2.1,c.55.3.7 68434,68435 1z1zA 131 5.05e+00 1zzmA 259 5.61e+00 1vmbA 140 5.96e+00 1f35A 162 6.89e+00 1f35A b.94.1.1 59628 1xnfA 275 7.34e+00 1whuA 104 7.91e+00 1hqkA 154 8.00e+00 c.16.1.1 65902 1l6rA 227 8.49e+00 c.108.1.10 77768 1i12A 160 8.62e+00 1i21A d.108.1.1 61515 1o0yA 260 9.25e+00 c.1.10.1 80756 2f4iA 197 9.43e+00 1wdjA 187 9.86e+00 2fwtA 125 1.01e+01 1xneA 113 1.08e+01 2bfxA 284 1.10e+01 1zghA 260 1.12e+01 1gxjA 186 1.15e+01 d.215.1.1 70707 1v72A 356 1.25e+01 1w36B 1180 1.32e+01 1sheA 103 1.33e+01 d.274.1.1 105551 1ccwA 137 1.33e+01 1be1 c.23.6.1 31238 2bnmA 198 1.34e+01 1vlmA 219 1.45e+01 c.66.1.41 108836 1u20A 212 1.46e+01 1zx8A 136 1.56e+01 2b5lC 222 1.62e+01 1m45A 148 1.63e+01 a.39.1.5 78598 1cqqA 180 1.71e+01 1cqqA b.47.1.4 26422 1e6iA 121 1.86e+01 1b91A a.29.2.1 16969 1yr2A 741 1.90e+01 1dq3A 454 1.91e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2cg4A 152 1.95e+01 1ga8A 311 1.97e+01 1ga8A c.68.1.4 34516 1nv8A 284 2.00e+01 c.66.1.30 86224 1r6uA 437 2.01e+01 c.26.1.1 97163 1kvkA 395 2.07e+01 d.14.1.5,d.58.26.3 73060,73061 1b7yB 785 2.07e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1ua4A 455 2.16e+01 c.72.1.3 99128 1tuzA 118 2.23e+01 2f9sA 151 2.27e+01 1wj9A 211 2.30e+01 1tr9A 341 2.30e+01 1s4nA 348 2.36e+01 c.68.1.16 98501 1nrwA 288 2.39e+01 c.108.1.10 86128 2abk 211 2.44e+01 2abk a.96.1.1 18743 1us5A 314 2.58e+01 c.94.1.1 99856 1xj4A 119 2.60e+01 1fxlA 167 2.62e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1vpkA 378 2.66e+01 2aalA 131 2.67e+01 1yw3A 208 2.67e+01 1xccA 220 2.68e+01 1dzkA 157 2.72e+01 1obpA b.60.1.1 27096 1repC 251 2.82e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1ix9A 205 2.86e+01 a.2.11.1,d.44.1.1 76899,76900 1i2aA 219 2.95e+01 e.24.1.1 90660 1wznA 252 2.98e+01 1h2kA 349 3.01e+01 b.82.2.6 76572 2cwsA 237 3.08e+01 1shxA 138 3.09e+01 1l5xA 280 3.13e+01 c.106.1.1 77718 1b2pA 119 3.14e+01 1b2pA b.78.1.1 27998 2b5eA 504 3.17e+01 1bjaA 95 3.18e+01 1bjaA a.4.5.9 16122 2d83A 363 3.22e+01 1io0A 185 3.23e+01 c.10.1.1 76753 1wpiA 133 3.25e+01 1ugpA 203 3.31e+01 d.149.1.1 107831 2fq4A 192 3.53e+01 1mb3A 124 3.55e+01 c.23.1.1 78907 1oxkB 134 3.55e+01 c.23.1.1 93691 1r0uA 148 3.57e+01 b.60.1.5 96741 1ihoA 283 3.59e+01 1ihoA c.26.1.4 62390 1bed 181 3.61e+01 1fvkA c.47.1.13 90330 1eajA 126 3.66e+01 1f5wA b.1.1.1 59401 1v30A 124 3.67e+01 1gnkA 112 3.72e+01 2pii d.58.5.1 39073 1st9A 143 3.72e+01 c.47.1.10 98987 2lhb 149 3.73e+01 2fal a.1.1.2 15597 2a67A 167 3.78e+01 1go3E 187 3.79e+01 b.40.4.5,d.230.1.1 83054,83055 1s5lU 134 3.81e+01 1iwmA 186 3.83e+01 b.125.1.2 83758 2cw6A 298 3.97e+01 1gxqA 106 4.00e+01 a.4.6.1 70721 2b5iD 217 4.03e+01 1v4pA 157 4.21e+01 1ejbA 168 4.26e+01 1rvv1 c.16.1.1 59417 2fokA 579 4.28e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1vyiA 112 4.30e+01 1jh3A 107 4.32e+01 d.66.1.4 71661 1o60A 292 4.37e+01 c.1.10.4 92532 1o57A 291 4.58e+01 a.4.5.40,c.61.1.1 92483,92484 1gwuA 309 4.64e+01 a.93.1.1 83351 1rro 108 4.66e+01 1a75A a.39.1.4 17195 1cqmA 101 4.73e+01 1ris d.58.14.1 39321 1k20A 310 4.83e+01 c.107.1.1 68027 1ixkA 315 4.85e+01 c.66.1.38 90716 1xo1A 291 4.87e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1wmiA 90 5.12e+01 2cveA 191 5.12e+01 1m0uA 249 5.13e+01 a.45.1.1,c.47.1.5 78359,78360 1vl5A 260 5.21e+01 c.66.1.41 108720 1n93X 375 5.21e+01 a.206.1.1 91707 1wkrA 340 5.39e+01 b.50.1.2 109395 2dc3A 193 5.54e+01 1vajA 214 5.55e+01 1jovA 270 5.58e+01 b.30.5.7 84192 1a3c 181 5.69e+01 1a3c c.61.1.1 34095 1nijA 318 5.89e+01 c.37.1.10,d.237.1.1 85741,85742 1iyhA 198 5.94e+01 a.45.1.1,c.47.1.5 83790,83791 1t5iA 172 6.00e+01 c.37.1.19 106450 2btvA 901 6.08e+01 2btvA e.28.1.1 43376 1o98A 511 6.12e+01 c.105.1.1,c.76.1.3 86684,86685 1mg4A 113 6.13e+01 d.15.11.1 84953 1vddA 228 6.20e+01 e.49.1.1 108519 1yn3A 98 6.28e+01 1d3gA 367 6.35e+01 1d3gA c.1.4.1 28600 1z9hA 290 6.37e+01 1ykhB 132 6.60e+01 1vzyA 291 6.69e+01 1wl8A 189 6.79e+01 1bn7A 294 6.84e+01 1bn6A c.69.1.8 34677 2bt2A 161 6.85e+01 1vr4A 103 6.91e+01 1v60A 123 6.95e+01 2d1pC 95 6.95e+01 4bcl 366 6.99e+01 4bcl b.75.1.1 27968 2avtA 378 7.11e+01 1k7kA 221 7.20e+01 c.51.4.1 72104 1z2uA 150 7.22e+01 1k2eA 156 7.26e+01 d.113.1.1 72010 2fztA 79 7.30e+01 1prxA 224 7.35e+01 1prxA c.47.1.10 33076 1yirA 408 7.37e+01 1ywfA 296 7.44e+01 1qyaA 307 7.47e+01 d.21.1.2,d.21.1.2 104653,104654 2fsxA 148 7.50e+01 1hlb 158 7.52e+01 1hlb a.1.1.2 15625 1uhkA 191 7.65e+01 1wteA 272 7.68e+01 1j05A 111 7.68e+01 b.1.1.1 90735 1x75A 132 7.78e+01 2bwqA 129 7.78e+01 1it2A 146 7.91e+01 a.1.1.2 66365 2bgcA 238 7.93e+01 1z0wA 207 8.04e+01 1zn6A 227 8.23e+01 1yqgA 263 8.28e+01 1w1nA 33 8.29e+01 1r77A 103 8.42e+01 2bkkA 264 8.57e+01 1hw7A 255 8.59e+01 1i7fA d.193.1.1 61297 1udh 244 8.63e+01 3eugA c.18.1.1 31015 1tzvA 142 8.80e+01 a.79.1.1 107526 1vd3A 217 8.89e+01