/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0298.t06.str2
mkdir -p decoys
rm decoys/read-pdb+servers.under
cd decoys; shopt -s nullglob ;  for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done
cd decoys; shopt -s nullglob ;  for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done
cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \
	do echo ReadConformPDB 	$x chain A >> read-pdb+servers.under ; \
		y=${x#../} ;\
		z=${y/decoys} ;\
		a=${z/T0298.} ;\
		b=${a%.gz} ;\
		c=${b%.pdb} ;\
		echo NameConform $c >> read-pdb+servers.under ; \
	done
cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \
	echo ReadConformPDB $x >> read-pdb+servers.under ; \
	y=${x%.pdb.gz} ; \
	z=${y#servers/} ; \
	echo NameConform $z >> read-pdb+servers.under ; \
	echo SCWRLConform >> read-pdb+servers.under ; \
	echo NameConform $z-scwrl >> read-pdb+servers.under ; \
	done
chgrp protein decoys/read-pdb+servers.under
chmod g+w decoys/read-pdb+servers.under
rm -f decoys/evaluate_1.rdb
sed -e s/XXX0000/T0298/ -e s/START_COL/1/ \
-e s/REAL_PDB/2hjsA/ \
-e s/_domain/_1/ \
-e s/read-pdb/read-pdb+servers/ \
-e 's/ReadConformPDBids/# ReadConformPDBids/' \
-e 's/# ReadConformPDB /ReadConformPDB /' \
-e 's/include COSTFCN.costfcn//' \
-e s/.COSTFCN// \
< /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \
| nice -2 /projects/compbio/programs/undertaker/undertaker
# command:# Seed set to 1169486517
# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/
# command:# reading monomeric-50pc.atoms
# trans (non-proline) backbone unit:
#	  CA= -2.2088 1.0126 -0.0031
#	   O= -0.1499 2.2440 0.0017
#	   C= -0.6889 1.1368 0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4581 0.0000 0.0000
# cis backbone unit:
#	  CA= -0.1462 2.4515 0.0018
#	   O= -2.0272 0.9713 0.0022
#	   C= -0.8006 1.0755 0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4659 0.0000 0.0000
# trans backbone unit before proline:
#	  CA= -2.2099 1.0634 -0.0014
#	   O= -0.1233 2.2459 0.0075
#	   C= -0.6871 1.1518 0.0000
#	 N+1= 0.0000 0.0000 0.0000
#	CA+1= 1.4660 0.0000 0.0000


# After reading monomeric-50pc.atoms have 448 chains in training database
#  Count of chains,residues,atoms: 448,112605,876684
#  109826 residues have no bad marker
#  665 residues lack atoms needed to compute omega
#  322 residues have cis peptide
#  number of each bad type:
#	NON_STANDARD_RESIDUE	6
#	HAS_OXT	325
#	TOO_MANY_ATOMS	1
#	TOO_FEW_ATOMS	523
#	HAS_UNKNOWN_ATOMS	2
#	HAS_DUPLICATE_ATOMS	0
#	CHAIN_BREAK_BEFORE	208
#	NON_PLANAR_PEPTIDE	143
#	BAD_PEPTIDE	1959
#  Note: may sum to more than number of residues, 
#    because one residue may have multiple problems
# command:# Reading rotamer library from dunbrack-1332.rot
# command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/
# command:# ReadAtomType exp-pdb.types
Read AtomType exp-pdb with 49 types.
# command:# ReadClashTable exp-pdb-2191-2symm.clash
# Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2
# command:# command:CPU_time= 6.12807 sec, elapsed time= 6.15419 sec)
# command:# Reading spots from monomeric-50pc-dry-5.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-dry-5.hist
# created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot
# command:# Reading spots from monomeric-50pc-wet-6.5.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-wet-6.5.hist
# created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot
# command:# Reading spots from monomeric-50pc-dry-6.5.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-dry-6.5.hist
# created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot
# command:# Reading spots from monomeric-50pc-generic-6.5.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-generic-6.5.hist
# created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot
# command:# Reading spots from near-backbone-center.spot
# reading histogram from smoothed-near-backbone-2spot.hist
# Reading spots from near-backbone-count.spot
# created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot
# command:# Reading spots from way-back-center.spot
# reading histogram from smoothed-way-back-2spot.hist
# Reading spots from way-back-count.spot
# created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot
# command:# Reading spots from monomeric-50pc-dry-8.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-dry-8.hist
# created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot
# command:# Reading spots from monomeric-50pc-dry-10.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-dry-10.hist
# created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot
# command:# Reading spots from monomeric-50pc-dry-12.spot
Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes
# reading histogram from smoothed-monomeric-50pc-dry-12.hist
# created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot
# command:# reading histogram from dunbrack-2191-alpha.hist
# created alpha cost function alpha with offset 0 and  360 bins
# command:# reading histogram from dunbrack-2191-alpha-1.hist
# created alpha cost function alpha_prev with offset -1 and  360 bins
# command:# Prefix for input files set to /projects/compbio/lib/alphabet/
# command:# Read 3 alphabets from alpha.alphabet
# command:CPU_time= 6.20606 sec, elapsed time= 6.24641 sec)
# command:# Prefix for input files set to 
# command:# Making conformation for sequence T0298 numbered 1 through 336
Created new target T0298 from T0298.a2m
# command:# command:# No conformations to remove in PopConform
# command:# cleared Id set
# command:# command:# ReadConformPDB reading from PDB file T0298_1.real.pdb looking for model 1
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Skipped atom 555, because occupancy 5.0000000e-01 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 557, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 559, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 561, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 563, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 565, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 730, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 732, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 734, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 736, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 738, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 740, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Bad short name: MSE for alphabet: ExtAA
Replacing MSE with M
Skipped atom 816, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 818, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 820, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 822, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 824, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 826, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 828, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 830, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
Skipped atom 832, because occupancy 0.500 <= existing 0.500 in T0298_1.real.pdb
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# Saving current conformation as real
# command:# Prefix for output files set to decoys/
# command:# SetRealCost created real_cost = 
#	( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms )
# command:# SetCost created cost = 
#	)
# command:CPU_time= 8.40472 sec, elapsed time= 8.46511 sec)
# command:# Prefix for input files set to 
# command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1
# choosing archetypes in rotamer library
# Found a chain break before 320
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -71.1409
# GDT_score(maxd=8,maxw=2.9)= -74.986
# GDT_score(maxd=8,maxw=3.2)= -70.7372
# GDT_score(maxd=8,maxw=3.5)= -66.8076
# GDT_score(maxd=10,maxw=3.8)= -69.8752
# GDT_score(maxd=10,maxw=4)= -67.432
# GDT_score(maxd=10,maxw=4.2)= -65.0483
# GDT_score(maxd=12,maxw=4.3)= -69.0071
# GDT_score(maxd=12,maxw=4.5)= -66.6837
# GDT_score(maxd=12,maxw=4.7)= -64.4521
# GDT_score(maxd=14,maxw=5.2)= -63.1569
# GDT_score(maxd=14,maxw=5.5)= -60.2491
# command:# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1490207250.pdb -s /var/tmp/to_scwrl_1490207250.seq -o /var/tmp/from_scwrl_1490207250.pdb > /var/tmp/scwrl_1490207250.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1490207250.pdb
# conformation set from SCWRL output
# command:# naming current conformation model1-scwrl
# command:# Prefix for output files set to 
# command:superimposing iter= 0 total_weight= 1678.000 rmsd (weighted)= 3.483 (unweighted)= 57.353
superimposing iter= 1 total_weight= 4084.538 rmsd (weighted)= 1.681 (unweighted)= 57.053
superimposing iter= 2 total_weight= 1617.980 rmsd (weighted)= 1.359 (unweighted)= 56.944
superimposing iter= 3 total_weight= 1185.866 rmsd (weighted)= 1.291 (unweighted)= 56.857
superimposing iter= 4 total_weight= 1117.029 rmsd (weighted)= 1.265 (unweighted)= 56.774
superimposing iter= 5 total_weight= 1105.249 rmsd (weighted)= 1.247 (unweighted)= 56.698
# command:# Prefix for output files set to decoys/
# command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -70.9732
# GDT_score(maxd=8,maxw=2.9)= -74.4521
# GDT_score(maxd=8,maxw=3.2)= -70.2284
# GDT_score(maxd=8,maxw=3.5)= -66.2163
# GDT_score(maxd=10,maxw=3.8)= -69.3404
# GDT_score(maxd=10,maxw=4)= -66.8478
# GDT_score(maxd=10,maxw=4.2)= -64.518
# GDT_score(maxd=12,maxw=4.3)= -68.4626
# GDT_score(maxd=12,maxw=4.5)= -66.1969
# GDT_score(maxd=12,maxw=4.7)= -64.0245
# GDT_score(maxd=14,maxw=5.2)= -62.8674
# GDT_score(maxd=14,maxw=5.5)= -60.0686
# command:# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1174121029.pdb -s /var/tmp/to_scwrl_1174121029.seq -o /var/tmp/from_scwrl_1174121029.pdb > /var/tmp/scwrl_1174121029.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1174121029.pdb
# conformation set from SCWRL output
# command:# naming current conformation model2-scwrl
# command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -71.8121
# GDT_score(maxd=8,maxw=2.9)= -76.2017
# GDT_score(maxd=8,maxw=3.2)= -72.2685
# GDT_score(maxd=8,maxw=3.5)= -68.3657
# GDT_score(maxd=10,maxw=3.8)= -71.3047
# GDT_score(maxd=10,maxw=4)= -68.8113
# GDT_score(maxd=10,maxw=4.2)= -66.4117
# GDT_score(maxd=12,maxw=4.3)= -70.2944
# GDT_score(maxd=12,maxw=4.5)= -67.9677
# GDT_score(maxd=12,maxw=4.7)= -65.7364
# GDT_score(maxd=14,maxw=5.2)= -64.4238
# GDT_score(maxd=14,maxw=5.5)= -61.5473
# command:# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2004277433.pdb -s /var/tmp/to_scwrl_2004277433.seq -o /var/tmp/from_scwrl_2004277433.pdb > /var/tmp/scwrl_2004277433.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2004277433.pdb
# conformation set from SCWRL output
# command:# naming current conformation model3-scwrl
# command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -72.1477
# GDT_score(maxd=8,maxw=2.9)= -76.0998
# GDT_score(maxd=8,maxw=3.2)= -72.0487
# GDT_score(maxd=8,maxw=3.5)= -68.1187
# GDT_score(maxd=10,maxw=3.8)= -71.0732
# GDT_score(maxd=10,maxw=4)= -68.5944
# GDT_score(maxd=10,maxw=4.2)= -66.2231
# GDT_score(maxd=12,maxw=4.3)= -70.0959
# GDT_score(maxd=12,maxw=4.5)= -67.7923
# GDT_score(maxd=12,maxw=4.7)= -65.5374
# GDT_score(maxd=14,maxw=5.2)= -64.2015
# GDT_score(maxd=14,maxw=5.5)= -61.25
# command:# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_704702221.pdb -s /var/tmp/to_scwrl_704702221.seq -o /var/tmp/from_scwrl_704702221.pdb > /var/tmp/scwrl_704702221.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_704702221.pdb
# conformation set from SCWRL output
# command:# naming current conformation model4-scwrl
# command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -70.4698
# GDT_score(maxd=8,maxw=2.9)= -74.1961
# GDT_score(maxd=8,maxw=3.2)= -69.964
# GDT_score(maxd=8,maxw=3.5)= -65.938
# GDT_score(maxd=10,maxw=3.8)= -69.0854
# GDT_score(maxd=10,maxw=4)= -66.5991
# GDT_score(maxd=10,maxw=4.2)= -64.2867
# GDT_score(maxd=12,maxw=4.3)= -68.2313
# GDT_score(maxd=12,maxw=4.5)= -65.9766
# GDT_score(maxd=12,maxw=4.7)= -63.7851
# GDT_score(maxd=14,maxw=5.2)= -62.6277
# GDT_score(maxd=14,maxw=5.5)= -59.8364
# command:# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_743407952.pdb -s /var/tmp/to_scwrl_743407952.seq -o /var/tmp/from_scwrl_743407952.pdb > /var/tmp/scwrl_743407952.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_743407952.pdb
# conformation set from SCWRL output
# command:# naming current conformation model5-scwrl
# command:# Prefix for input files set to decoys/
# command:# ReadConformPDB reading from PDB file T0298.try1-opt2.pdb looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# command:# fraction of real conformation used = 1
# GDT_score = -72.1477
# GDT_score(maxd=8,maxw=2.9)= -76.1047
# GDT_score(maxd=8,maxw=3.2)= -72.0561
# GDT_score(maxd=8,maxw=3.5)= -68.1256
# GDT_score(maxd=10,maxw=3.8)= -71.0796
# GDT_score(maxd=10,maxw=4)= -68.5993
# GDT_score(maxd=10,maxw=4.2)= -66.2295
# GDT_score(maxd=12,maxw=4.3)= -70.0988
# GDT_score(maxd=12,maxw=4.5)= -67.7977
# GDT_score(maxd=12,maxw=4.7)= -65.5447
# GDT_score(maxd=14,maxw=5.2)= -64.208
# GDT_score(maxd=14,maxw=5.5)= -61.2568
# command:# Prefix for output files set to 
# command:superimposing iter= 0 total_weight= 1678.000 rmsd (weighted)= 3.385 (unweighted)= 57.616
superimposing iter= 1 total_weight= 4346.073 rmsd (weighted)= 1.563 (unweighted)= 57.267
superimposing iter= 2 total_weight= 1795.705 rmsd (weighted)= 1.199 (unweighted)= 57.164
superimposing iter= 3 total_weight= 1217.518 rmsd (weighted)= 1.126 (unweighted)= 57.102
superimposing iter= 4 total_weight= 1112.036 rmsd (weighted)= 1.108 (unweighted)= 57.057
superimposing iter= 5 total_weight= 1094.209 rmsd (weighted)= 1.099 (unweighted)= 57.025
# command:# Prefix for output files set to decoys/
# command:# Prefix for input files set to 
# command:# ReadConformPDB reading from PDB file T0298.undertaker-align.pdb looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# naming current conformation align1
# command:# fraction of real conformation used = 0.959732
# GDT_score = -66.7785
# GDT_score(maxd=8,maxw=2.9)= -69.8346
# GDT_score(maxd=8,maxw=3.2)= -65.9078
# GDT_score(maxd=8,maxw=3.5)= -62.1315
# GDT_score(maxd=10,maxw=3.8)= -65.2447
# GDT_score(maxd=10,maxw=4)= -62.919
# GDT_score(maxd=10,maxw=4.2)= -60.6931
# GDT_score(maxd=12,maxw=4.3)= -64.5495
# GDT_score(maxd=12,maxw=4.5)= -62.3835
# GDT_score(maxd=12,maxw=4.7)= -60.3416
# GDT_score(maxd=14,maxw=5.2)= -59.2786
# GDT_score(maxd=14,maxw=5.5)= -56.6342
# command:# ReadConformPDB reading from PDB file T0298.undertaker-align.pdb looking for model 2
WARNING: atoms too close: (T0298)L36.C and (T0298)L37.C only 0.000 apart, marking (T0298)L37.C as missing
WARNING: atoms too close: (T0298)L37.N and (T0298)A38.N only 0.000 apart, marking (T0298)L37.N as missing
WARNING: atoms too close: (T0298)L37.CA and (T0298)A38.CA only 0.000 apart, marking (T0298)L37.CA as missing
WARNING: atoms too close: (T0298)G167.C and (T0298)P183.C only 0.000 apart, marking (T0298)P183.C as missing
WARNING: atoms too close: (T0298)V168.N and (T0298)L184.N only 0.000 apart, marking (T0298)V168.N as missing
WARNING: atoms too close: (T0298)V168.CA and (T0298)L184.CA only 0.000 apart, marking (T0298)V168.CA as missing
WARNING: atoms too close: (T0298)D190.C and (T0298)A194.C only 0.000 apart, marking (T0298)A194.C as missing
WARNING: atoms too close: (T0298)R191.N and (T0298)F195.N only 0.000 apart, marking (T0298)R191.N as missing
WARNING: atoms too close: (T0298)R191.CA and (T0298)F195.CA only 0.000 apart, marking (T0298)R191.CA as missing
WARNING: atoms too close: (T0298)V201.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G202.N and (T0298)S210.N only 0.000 apart, marking (T0298)G202.N as missing
WARNING: atoms too close: (T0298)G202.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)G202.CA as missing
WARNING: atoms too close: (T0298)Q301.C and (T0298)D303.C only 0.000 apart, marking (T0298)D303.C as missing
WARNING: atoms too close: (T0298)A302.N and (T0298)P304.N only 0.000 apart, marking (T0298)A302.N as missing
WARNING: atoms too close: (T0298)A302.CA and (T0298)P304.CA only 0.000 apart, marking (T0298)A302.CA as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# naming current conformation align2
# command:# fraction of real conformation used = 0.95302
# GDT_score = -69.7987
# GDT_score(maxd=8,maxw=2.9)= -73.5992
# GDT_score(maxd=8,maxw=3.2)= -70.326
# GDT_score(maxd=8,maxw=3.5)= -66.7683
# GDT_score(maxd=10,maxw=3.8)= -69.2396
# GDT_score(maxd=10,maxw=4)= -66.9405
# GDT_score(maxd=10,maxw=4.2)= -64.6485
# GDT_score(maxd=12,maxw=4.3)= -68.2391
# GDT_score(maxd=12,maxw=4.5)= -66.0095
# GDT_score(maxd=12,maxw=4.7)= -63.8078
# GDT_score(maxd=14,maxw=5.2)= -62.3374
# GDT_score(maxd=14,maxw=5.5)= -59.373
# command:# ReadConformPDB reading from PDB file T0298.undertaker-align.pdb looking for model 3
WARNING: atoms too close: (T0298)D25.C and (T0298)R27.C only 0.000 apart, marking (T0298)R27.C as missing
WARNING: atoms too close: (T0298)E26.N and (T0298)D28.N only 0.000 apart, marking (T0298)E26.N as missing
WARNING: atoms too close: (T0298)E26.CA and (T0298)D28.CA only 0.000 apart, marking (T0298)E26.CA as missing
WARNING: atoms too close: (T0298)A118.C and (T0298)A121.C only 0.000 apart, marking (T0298)A121.C as missing
WARNING: atoms too close: (T0298)S119.N and (T0298)A122.N only 0.000 apart, marking (T0298)S119.N as missing
WARNING: atoms too close: (T0298)S119.CA and (T0298)A122.CA only 0.000 apart, marking (T0298)S119.CA as missing
WARNING: atoms too close: (T0298)A134.C and (T0298)E135.C only 0.000 apart, marking (T0298)E135.C as missing
WARNING: atoms too close: (T0298)E135.N and (T0298)L136.N only 0.000 apart, marking (T0298)E135.N as missing
WARNING: atoms too close: (T0298)E135.CA and (T0298)L136.CA only 0.000 apart, marking (T0298)E135.CA as missing
WARNING: atoms too close: (T0298)R173.C and (T0298)E177.C only 0.000 apart, marking (T0298)E177.C as missing
WARNING: atoms too close: (T0298)Q174.N and (T0298)L178.N only 0.000 apart, marking (T0298)Q174.N as missing
WARNING: atoms too close: (T0298)Q174.CA and (T0298)L178.CA only 0.000 apart, marking (T0298)Q174.CA as missing
WARNING: atoms too close: (T0298)L184.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)E185.N and (T0298)D205.N only 0.000 apart, marking (T0298)E185.N as missing
WARNING: atoms too close: (T0298)E185.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)E185.CA as missing
WARNING: atoms too close: (T0298)V220.C and (T0298)L224.C only 0.000 apart, marking (T0298)L224.C as missing
WARNING: atoms too close: (T0298)Q221.N and (T0298)G225.N only 0.000 apart, marking (T0298)Q221.N as missing
WARNING: atoms too close: (T0298)Q221.CA and (T0298)G225.CA only 0.000 apart, marking (T0298)Q221.CA as missing
WARNING: atoms too close: (T0298)V283.C and (T0298)G284.C only 0.000 apart, marking (T0298)G284.C as missing
WARNING: atoms too close: (T0298)G284.N and (T0298)D285.N only 0.000 apart, marking (T0298)G284.N as missing
WARNING: atoms too close: (T0298)G284.CA and (T0298)D285.CA only 0.000 apart, marking (T0298)G284.CA as missing
WARNING: atoms too close: (T0298)G295.C and (T0298)R296.C only 0.000 apart, marking (T0298)R296.C as missing
WARNING: atoms too close: (T0298)R296.N and (T0298)V297.N only 0.000 apart, marking (T0298)R296.N as missing
WARNING: atoms too close: (T0298)R296.CA and (T0298)V297.CA only 0.000 apart, marking (T0298)R296.CA as missing
WARNING: atoms too close: (T0298)Q301.C and (T0298)A302.C only 0.000 apart, marking (T0298)A302.C as missing
WARNING: atoms too close: (T0298)A302.N and (T0298)D303.N only 0.000 apart, marking (T0298)A302.N as missing
WARNING: atoms too close: (T0298)A302.CA and (T0298)D303.CA only 0.000 apart, marking (T0298)A302.CA as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# naming current conformation align3
# command:# ReadConformPDB reading from PDB file T0298.undertaker-align.pdb looking for model 4
WARNING: atoms too close: (T0298)G11.C and (T0298)A12.C only 0.000 apart, marking (T0298)A12.C as missing
WARNING: atoms too close: (T0298)A12.N and (T0298)T13.N only 0.000 apart, marking (T0298)A12.N as missing
WARNING: atoms too close: (T0298)A12.CA and (T0298)T13.CA only 0.000 apart, marking (T0298)A12.CA as missing
WARNING: atoms too close: (T0298)I94.C and (T0298)D95.C only 0.000 apart, marking (T0298)D95.C as missing
WARNING: atoms too close: (T0298)D95.N and (T0298)L96.N only 0.000 apart, marking (T0298)D95.N as missing
WARNING: atoms too close: (T0298)D95.CA and (T0298)L96.CA only 0.000 apart, marking (T0298)D95.CA as missing
WARNING: atoms too close: (T0298)E101.C and (T0298)P102.C only 0.000 apart, marking (T0298)P102.C as missing
WARNING: atoms too close: (T0298)P102.N and (T0298)S103.N only 0.000 apart, marking (T0298)P102.N as missing
WARNING: atoms too close: (T0298)P102.CA and (T0298)S103.CA only 0.000 apart, marking (T0298)P102.CA as missing
WARNING: atoms too close: (T0298)S119.C and (T0298)A121.C only 0.000 apart, marking (T0298)A121.C as missing
WARNING: atoms too close: (T0298)Q120.N and (T0298)A122.N only 0.000 apart, marking (T0298)Q120.N as missing
WARNING: atoms too close: (T0298)Q120.CA and (T0298)A122.CA only 0.000 apart, marking (T0298)Q120.CA as missing
WARNING: atoms too close: (T0298)A134.C and (T0298)E135.C only 0.000 apart, marking (T0298)E135.C as missing
WARNING: atoms too close: (T0298)E135.N and (T0298)L136.N only 0.000 apart, marking (T0298)E135.N as missing
WARNING: atoms too close: (T0298)E135.CA and (T0298)L136.CA only 0.000 apart, marking (T0298)E135.CA as missing
WARNING: atoms too close: (T0298)L163.C and (T0298)T175.C only 0.000 apart, marking (T0298)T175.C as missing
WARNING: atoms too close: (T0298)G164.N and (T0298)A176.N only 0.000 apart, marking (T0298)G164.N as missing
WARNING: atoms too close: (T0298)G164.CA and (T0298)A176.CA only 0.000 apart, marking (T0298)G164.CA as missing
WARNING: atoms too close: (T0298)A199.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)Q200.N and (T0298)D205.N only 0.000 apart, marking (T0298)Q200.N as missing
WARNING: atoms too close: (T0298)Q200.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)Q200.CA as missing
WARNING: atoms too close: (T0298)A222.C and (T0298)G229.C only 0.000 apart, marking (T0298)G229.C as missing
WARNING: atoms too close: (T0298)L223.N and (T0298)P230.N only 0.000 apart, marking (T0298)L223.N as missing
WARNING: atoms too close: (T0298)L223.CA and (T0298)P230.CA only 0.000 apart, marking (T0298)L223.CA as missing
WARNING: atoms too close: (T0298)N315.C and (T0298)V316.C only 0.000 apart, marking (T0298)V316.C as missing
WARNING: atoms too close: (T0298)V316.N and (T0298)R317.N only 0.000 apart, marking (T0298)V316.N as missing
WARNING: atoms too close: (T0298)V316.CA and (T0298)R317.CA only 0.000 apart, marking (T0298)V316.CA as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# naming current conformation align4
# command:# ReadConformPDB reading from PDB file T0298.undertaker-align.pdb looking for model 5
WARNING: atoms too close: (T0298)G11.C and (T0298)A12.C only 0.000 apart, marking (T0298)A12.C as missing
WARNING: atoms too close: (T0298)A12.N and (T0298)T13.N only 0.000 apart, marking (T0298)A12.N as missing
WARNING: atoms too close: (T0298)A12.CA and (T0298)T13.CA only 0.000 apart, marking (T0298)A12.CA as missing
WARNING: atoms too close: (T0298)I94.C and (T0298)D95.C only 0.000 apart, marking (T0298)D95.C as missing
WARNING: atoms too close: (T0298)D95.N and (T0298)L96.N only 0.000 apart, marking (T0298)D95.N as missing
WARNING: atoms too close: (T0298)D95.CA and (T0298)L96.CA only 0.000 apart, marking (T0298)D95.CA as missing
WARNING: atoms too close: (T0298)S119.C and (T0298)A121.C only 0.000 apart, marking (T0298)A121.C as missing
WARNING: atoms too close: (T0298)Q120.N and (T0298)A122.N only 0.000 apart, marking (T0298)Q120.N as missing
WARNING: atoms too close: (T0298)Q120.CA and (T0298)A122.CA only 0.000 apart, marking (T0298)Q120.CA as missing
WARNING: atoms too close: (T0298)A134.C and (T0298)E135.C only 0.000 apart, marking (T0298)E135.C as missing
WARNING: atoms too close: (T0298)E135.N and (T0298)L136.N only 0.000 apart, marking (T0298)E135.N as missing
WARNING: atoms too close: (T0298)E135.CA and (T0298)L136.CA only 0.000 apart, marking (T0298)E135.CA as missing
WARNING: atoms too close: (T0298)L163.C and (T0298)T175.C only 0.000 apart, marking (T0298)T175.C as missing
WARNING: atoms too close: (T0298)G164.N and (T0298)A176.N only 0.000 apart, marking (T0298)G164.N as missing
WARNING: atoms too close: (T0298)G164.CA and (T0298)A176.CA only 0.000 apart, marking (T0298)G164.CA as missing
WARNING: atoms too close: (T0298)A199.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)Q200.N and (T0298)D205.N only 0.000 apart, marking (T0298)Q200.N as missing
WARNING: atoms too close: (T0298)Q200.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)Q200.CA as missing
WARNING: atoms too close: (T0298)A222.C and (T0298)G229.C only 0.000 apart, marking (T0298)G229.C as missing
WARNING: atoms too close: (T0298)L223.N and (T0298)P230.N only 0.000 apart, marking (T0298)L223.N as missing
WARNING: atoms too close: (T0298)L223.CA and (T0298)P230.CA only 0.000 apart, marking (T0298)L223.CA as missing
WARNING: atoms too close: (T0298)N315.C and (T0298)V316.C only 0.000 apart, marking (T0298)V316.C as missing
WARNING: atoms too close: (T0298)V316.N and (T0298)R317.N only 0.000 apart, marking (T0298)V316.N as missing
WARNING: atoms too close: (T0298)V316.CA and (T0298)R317.CA only 0.000 apart, marking (T0298)V316.CA as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# command:# naming current conformation align5
# command:# Prefix for input files set to decoys/
# command:# reading script from file read-pdb+servers.under
# ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try1-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try1-opt1.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try1-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try1-opt2.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try1-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try2-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 296
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try2-opt1.pdb.gz looking for model 1
# Found a chain break before 296
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try2-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 281
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try2-opt2.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try2-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try3-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 315
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try3-opt1.pdb.gz looking for model 1
# Found a chain break before 315
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try3-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 277
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try3-opt2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try3-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try4-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 288
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try4-opt1.pdb.gz looking for model 1
# Found a chain break before 288
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try4-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 309
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try4-opt2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try4-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try5-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 277
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try5-opt1.pdb.gz looking for model 1
# Found a chain break before 277
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try5-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 279
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try5-opt2.pdb.gz looking for model 1
# Found a chain break before 300
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try5-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 300
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try6-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try6-opt1.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try6-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 270
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try6-opt2.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try6-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try7-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try7-opt1.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try7-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 270
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try7-opt2.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try7-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try8-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try8-opt1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try8-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 321
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try8-opt2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try8-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try9-opt1-scwrl.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try9-opt1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try9-opt2.gromacs0.pdb.gz looking for model 1
# Found a chain break before 305
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try9-opt2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file T0298.try9-opt2.repack-nonPC.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file from-dimer-try1-opt2-A.pdb.gz looking for model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt1-scwrl.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt1-scwrl
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt1.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt1
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt2.gromacs0.pdb.gz looking for chain 'A' model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt2.gromacs0
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt2.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt2
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt2.repack-nonPC.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt2.repack-nonPC
# ReadConformPDB reading from PDB file ../dimer/decoys/T0298.try1-opt2.unpack.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//try1-opt2.unpack
# ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try7-1t4bA.pdb.gz looking for chain 'A' model 1
# Found a chain break before 286
# copying to AlignedFragments data structure
# naming current conformation dimer//dimer-try7-1t4bA
# ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try8-1t4bA.pdb.gz looking for chain 'A' model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation dimer//dimer-try8-1t4bA
# ReadConformPDB reading from PDB file ../dimer/decoys/dimer-try9-1t4bA.pdb.gz looking for chain 'A' model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation dimer//dimer-try9-1t4bA
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_242656333.pdb -s /var/tmp/to_scwrl_242656333.seq -o /var/tmp/from_scwrl_242656333.pdb > /var/tmp/scwrl_242656333.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_242656333.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_451750786.pdb -s /var/tmp/to_scwrl_451750786.seq -o /var/tmp/from_scwrl_451750786.pdb > /var/tmp/scwrl_451750786.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_451750786.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1072448804.pdb -s /var/tmp/to_scwrl_1072448804.seq -o /var/tmp/from_scwrl_1072448804.pdb > /var/tmp/scwrl_1072448804.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1072448804.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_238935841.pdb -s /var/tmp/to_scwrl_238935841.seq -o /var/tmp/from_scwrl_238935841.pdb > /var/tmp/scwrl_238935841.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_238935841.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_POPULUS_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_154222002.pdb -s /var/tmp/to_scwrl_154222002.seq -o /var/tmp/from_scwrl_154222002.pdb > /var/tmp/scwrl_154222002.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_154222002.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1740322960.pdb -s /var/tmp/to_scwrl_1740322960.seq -o /var/tmp/from_scwrl_1740322960.pdb > /var/tmp/scwrl_1740322960.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1740322960.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1914477016.pdb -s /var/tmp/to_scwrl_1914477016.seq -o /var/tmp/from_scwrl_1914477016.pdb > /var/tmp/scwrl_1914477016.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1914477016.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1011469345.pdb -s /var/tmp/to_scwrl_1011469345.seq -o /var/tmp/from_scwrl_1011469345.pdb > /var/tmp/scwrl_1011469345.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1011469345.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1320022998.pdb -s /var/tmp/to_scwrl_1320022998.seq -o /var/tmp/from_scwrl_1320022998.pdb > /var/tmp/scwrl_1320022998.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1320022998.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_RECOM_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_761041000.pdb -s /var/tmp/to_scwrl_761041000.seq -o /var/tmp/from_scwrl_761041000.pdb > /var/tmp/scwrl_761041000.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_761041000.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_35801138.pdb -s /var/tmp/to_scwrl_35801138.seq -o /var/tmp/from_scwrl_35801138.pdb > /var/tmp/scwrl_35801138.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_35801138.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_TS1-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1968326049.pdb -s /var/tmp/to_scwrl_1968326049.seq -o /var/tmp/from_scwrl_1968326049.pdb > /var/tmp/scwrl_1968326049.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1968326049.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_TS2-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_837055414.pdb -s /var/tmp/to_scwrl_837055414.seq -o /var/tmp/from_scwrl_837055414.pdb > /var/tmp/scwrl_837055414.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_837055414.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_TS3-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_478175430.pdb -s /var/tmp/to_scwrl_478175430.seq -o /var/tmp/from_scwrl_478175430.pdb > /var/tmp/scwrl_478175430.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_478175430.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_TS4-scwrl
# ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation 3D-JIGSAW_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_413258974.pdb -s /var/tmp/to_scwrl_413258974.seq -o /var/tmp/from_scwrl_413258974.pdb > /var/tmp/scwrl_413258974.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_413258974.pdb
# conformation set from SCWRL output
# naming current conformation 3D-JIGSAW_TS5-scwrl
# ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1083665164.pdb -s /var/tmp/to_scwrl_1083665164.seq -o /var/tmp/from_scwrl_1083665164.pdb > /var/tmp/scwrl_1083665164.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1083665164.pdb
# conformation set from SCWRL output
# naming current conformation 3Dpro_TS1-scwrl
# ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_355032604.pdb -s /var/tmp/to_scwrl_355032604.seq -o /var/tmp/from_scwrl_355032604.pdb > /var/tmp/scwrl_355032604.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_355032604.pdb
# conformation set from SCWRL output
# naming current conformation 3Dpro_TS2-scwrl
# ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1
# Found a chain break before 305
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1679853284.pdb -s /var/tmp/to_scwrl_1679853284.seq -o /var/tmp/from_scwrl_1679853284.pdb > /var/tmp/scwrl_1679853284.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1679853284.pdb
# conformation set from SCWRL output
# naming current conformation 3Dpro_TS3-scwrl
# ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1
# Found a chain break before 235
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_611550645.pdb -s /var/tmp/to_scwrl_611550645.seq -o /var/tmp/from_scwrl_611550645.pdb > /var/tmp/scwrl_611550645.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_611550645.pdb
# conformation set from SCWRL output
# naming current conformation 3Dpro_TS4-scwrl
# ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1
# Found a chain break before 331
# copying to AlignedFragments data structure
# naming current conformation 3Dpro_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1384557462.pdb -s /var/tmp/to_scwrl_1384557462.seq -o /var/tmp/from_scwrl_1384557462.pdb > /var/tmp/scwrl_1384557462.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1384557462.pdb
# conformation set from SCWRL output
# naming current conformation 3Dpro_TS5-scwrl
# ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_121712662.pdb -s /var/tmp/to_scwrl_121712662.seq -o /var/tmp/from_scwrl_121712662.pdb > /var/tmp/scwrl_121712662.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_121712662.pdb
# conformation set from SCWRL output
# naming current conformation ABIpro_TS1-scwrl
# ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_456509436.pdb -s /var/tmp/to_scwrl_456509436.seq -o /var/tmp/from_scwrl_456509436.pdb > /var/tmp/scwrl_456509436.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_456509436.pdb
# conformation set from SCWRL output
# naming current conformation ABIpro_TS2-scwrl
# ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_744618328.pdb -s /var/tmp/to_scwrl_744618328.seq -o /var/tmp/from_scwrl_744618328.pdb > /var/tmp/scwrl_744618328.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_744618328.pdb
# conformation set from SCWRL output
# naming current conformation ABIpro_TS3-scwrl
# ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1
# Found a chain break before 324
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1488354793.pdb -s /var/tmp/to_scwrl_1488354793.seq -o /var/tmp/from_scwrl_1488354793.pdb > /var/tmp/scwrl_1488354793.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1488354793.pdb
# conformation set from SCWRL output
# naming current conformation ABIpro_TS4-scwrl
# ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1
# Found a chain break before 321
# copying to AlignedFragments data structure
# naming current conformation ABIpro_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1580291503.pdb -s /var/tmp/to_scwrl_1580291503.seq -o /var/tmp/from_scwrl_1580291503.pdb > /var/tmp/scwrl_1580291503.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1580291503.pdb
# conformation set from SCWRL output
# naming current conformation ABIpro_TS5-scwrl
# ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation BayesHH_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_610599350.pdb -s /var/tmp/to_scwrl_610599350.seq -o /var/tmp/from_scwrl_610599350.pdb > /var/tmp/scwrl_610599350.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_610599350.pdb
# conformation set from SCWRL output
# naming current conformation BayesHH_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1
# Found a chain break before 332
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_831078397.pdb -s /var/tmp/to_scwrl_831078397.seq -o /var/tmp/from_scwrl_831078397.pdb > /var/tmp/scwrl_831078397.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_831078397.pdb
# conformation set from SCWRL output
# naming current conformation Bilab-ENABLE_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_606928887.pdb -s /var/tmp/to_scwrl_606928887.seq -o /var/tmp/from_scwrl_606928887.pdb > /var/tmp/scwrl_606928887.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_606928887.pdb
# conformation set from SCWRL output
# naming current conformation Bilab-ENABLE_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_467393136.pdb -s /var/tmp/to_scwrl_467393136.seq -o /var/tmp/from_scwrl_467393136.pdb > /var/tmp/scwrl_467393136.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_467393136.pdb
# conformation set from SCWRL output
# naming current conformation Bilab-ENABLE_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1535780617.pdb -s /var/tmp/to_scwrl_1535780617.seq -o /var/tmp/from_scwrl_1535780617.pdb > /var/tmp/scwrl_1535780617.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1535780617.pdb
# conformation set from SCWRL output
# naming current conformation Bilab-ENABLE_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Bilab-ENABLE_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1350336838.pdb -s /var/tmp/to_scwrl_1350336838.seq -o /var/tmp/from_scwrl_1350336838.pdb > /var/tmp/scwrl_1350336838.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1350336838.pdb
# conformation set from SCWRL output
# naming current conformation Bilab-ENABLE_TS5-scwrl
# ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1
# Found a chain break before 328
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_710049469.pdb -s /var/tmp/to_scwrl_710049469.seq -o /var/tmp/from_scwrl_710049469.pdb > /var/tmp/scwrl_710049469.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_710049469.pdb
# conformation set from SCWRL output
# naming current conformation CIRCLE_TS1-scwrl
# ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1987531403.pdb -s /var/tmp/to_scwrl_1987531403.seq -o /var/tmp/from_scwrl_1987531403.pdb > /var/tmp/scwrl_1987531403.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1987531403.pdb
# conformation set from SCWRL output
# naming current conformation CIRCLE_TS2-scwrl
# ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_275301995.pdb -s /var/tmp/to_scwrl_275301995.seq -o /var/tmp/from_scwrl_275301995.pdb > /var/tmp/scwrl_275301995.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_275301995.pdb
# conformation set from SCWRL output
# naming current conformation CIRCLE_TS3-scwrl
# ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation CIRCLE_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_948985310.pdb -s /var/tmp/to_scwrl_948985310.seq -o /var/tmp/from_scwrl_948985310.pdb > /var/tmp/scwrl_948985310.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_948985310.pdb
# conformation set from SCWRL output
# naming current conformation CIRCLE_TS4-scwrl
# ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CIRCLE_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2141753405.pdb -s /var/tmp/to_scwrl_2141753405.seq -o /var/tmp/from_scwrl_2141753405.pdb > /var/tmp/scwrl_2141753405.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2141753405.pdb
# conformation set from SCWRL output
# naming current conformation CIRCLE_TS5-scwrl
# ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CPHmodels_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2015624955.pdb -s /var/tmp/to_scwrl_2015624955.seq -o /var/tmp/from_scwrl_2015624955.pdb > /var/tmp/scwrl_2015624955.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2015624955.pdb
# conformation set from SCWRL output
# naming current conformation CPHmodels_TS1-scwrl
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_715978679.pdb -s /var/tmp/to_scwrl_715978679.seq -o /var/tmp/from_scwrl_715978679.pdb > /var/tmp/scwrl_715978679.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_715978679.pdb
# conformation set from SCWRL output
# naming current conformation CaspIta-FOX_TS1-scwrl
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1
WARNING: atoms too close: (T0298)G202.C and (T0298)A203.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A203.CA only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A203.CA only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A203.CB only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A203.CB only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A203.CB only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A203.O only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A203.C only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CA only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CB only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CG1 only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.CG2 only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.O only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)V204.C only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.CA only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.CB only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.CG only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.OD1 only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.OD2 only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.O only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)D205.C only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A206.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A206.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A206.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A206.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A206.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A206.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A206.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A206.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A206.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A206.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A206.CA only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A206.CB only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A206.O only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A206.C only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CA only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CB only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CG only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.CD only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.OE1 only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.OE2 only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.O only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E207.C only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)G208.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)G208.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)G208.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)G208.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)G208.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)G208.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)G208.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)G208.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)G208.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)G208.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)G208.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)G208.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)G208.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)G208.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)G208.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)G208.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)G208.CA only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)G208.O only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)G208.C only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.N only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.N only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.N only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.N only 0.000 apart, marking (T0298)H209.N as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CA only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CB only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CG only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CD2 only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.ND1 only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.CE1 only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.NE2 only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.O only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)H209.C only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.N only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.N only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.N only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.N only 0.000 apart, marking (T0298)H209.N as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.N only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.N only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.N only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.N only 0.000 apart, marking (T0298)S210.N as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.CA only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.CB only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.OG only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.O only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)S210.C only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)A211.N only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)A211.N only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.N only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.N only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.N only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)A211.N only 0.000 apart, marking (T0298)S210.N as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)A211.N only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)A211.N only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.N only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)A211.N only 0.000 apart, marking (T0298)H209.N as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)A211.N only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)A211.N only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.N only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)A211.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)A211.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)A211.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)A211.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)A211.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A211.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A211.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A211.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A211.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A211.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A211.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A211.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A211.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A211.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A211.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A211.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A211.N only 0.000 apart, marking (T0298)A211.N as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A211.CA only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A211.CB only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A211.O only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)A211.C only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.N only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.N only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.N only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.N only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.N only 0.000 apart, marking (T0298)A211.N as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.N only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.N only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.N only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.N only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.N only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.N only 0.000 apart, marking (T0298)S210.N as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.N only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.N only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.N only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.N only 0.000 apart, marking (T0298)H209.N as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.N only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.N only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.N only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.N only 0.000 apart, marking (T0298)I212.N as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CA only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CB only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CG1 only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CG2 only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.CD1 only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.O only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)I212.C only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.N only 0.000 apart, marking (T0298)I212.C as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.N only 0.000 apart, marking (T0298)I212.O as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CD1 as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CG2 as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CG1 as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CB as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.N only 0.000 apart, marking (T0298)I212.CA as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.N only 0.000 apart, marking (T0298)I212.N as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.N only 0.000 apart, marking (T0298)A211.C as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.N only 0.000 apart, marking (T0298)A211.O as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.N only 0.000 apart, marking (T0298)A211.CB as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.N only 0.000 apart, marking (T0298)A211.CA as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.N only 0.000 apart, marking (T0298)A211.N as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.N only 0.000 apart, marking (T0298)S210.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.N only 0.000 apart, marking (T0298)S210.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.N only 0.000 apart, marking (T0298)S210.OG as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.N only 0.000 apart, marking (T0298)S210.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.N only 0.000 apart, marking (T0298)S210.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.N only 0.000 apart, marking (T0298)S210.N as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.N only 0.000 apart, marking (T0298)H209.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.N only 0.000 apart, marking (T0298)H209.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.NE2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CE1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.ND1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CD2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.N only 0.000 apart, marking (T0298)H209.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.N only 0.000 apart, marking (T0298)H209.N as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.N only 0.000 apart, marking (T0298)G208.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.N only 0.000 apart, marking (T0298)G208.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.N only 0.000 apart, marking (T0298)G208.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.N only 0.000 apart, marking (T0298)G208.N as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.N only 0.000 apart, marking (T0298)E207.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.N only 0.000 apart, marking (T0298)E207.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.N only 0.000 apart, marking (T0298)E207.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.N only 0.000 apart, marking (T0298)E207.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.N only 0.000 apart, marking (T0298)E207.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.N only 0.000 apart, marking (T0298)E207.N as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.N only 0.000 apart, marking (T0298)A206.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.N only 0.000 apart, marking (T0298)A206.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.N only 0.000 apart, marking (T0298)A206.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.N only 0.000 apart, marking (T0298)A206.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.N only 0.000 apart, marking (T0298)A206.N as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.N only 0.000 apart, marking (T0298)D205.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.N only 0.000 apart, marking (T0298)D205.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.N only 0.000 apart, marking (T0298)D205.OD2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.N only 0.000 apart, marking (T0298)D205.OD1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.N only 0.000 apart, marking (T0298)D205.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.N only 0.000 apart, marking (T0298)D205.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.N only 0.000 apart, marking (T0298)D205.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.N only 0.000 apart, marking (T0298)D205.N as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.N only 0.000 apart, marking (T0298)V204.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.N only 0.000 apart, marking (T0298)V204.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CG2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CG1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.N only 0.000 apart, marking (T0298)V204.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.N only 0.000 apart, marking (T0298)V204.N as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.N only 0.000 apart, marking (T0298)A203.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.N only 0.000 apart, marking (T0298)A203.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.N only 0.000 apart, marking (T0298)A203.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.N only 0.000 apart, marking (T0298)A203.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.N only 0.000 apart, marking (T0298)A203.N as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.N only 0.000 apart, marking (T0298)E213.N as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CA only 0.000 apart, marking (T0298)E213.CA as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CB only 0.000 apart, marking (T0298)E213.CB as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CG only 0.000 apart, marking (T0298)E213.CG as missing
WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.CD only 0.000 apart, marking (T0298)E213.CD as missing
WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.OE1 only 0.000 apart, marking (T0298)E213.OE1 as missing
WARNING: atoms too close: (T0298)E213.OE1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.OE2 only 0.000 apart, marking (T0298)E213.OE2 as missing
WARNING: atoms too close: (T0298)E213.OE2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.OE1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.O only 0.000 apart, marking (T0298)E213.O as missing
WARNING: atoms too close: (T0298)E213.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.OE2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.OE1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.CD and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E213.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.CD1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.CG2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.CG1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)I212.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A211.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A211.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A211.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A211.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A211.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.OG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)S210.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.NE2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.CE1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.ND1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.CD2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)H209.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)G208.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)G208.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)G208.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)G208.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.OE2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.OE1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.CD and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)E207.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A206.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A206.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A206.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A206.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A206.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.OD2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.OD1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.CG and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)D205.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.CG2 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.CG1 and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)V204.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A203.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A203.O and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A203.CB and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A203.CA and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)A203.N and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
WARNING: atoms too close: (T0298)G202.C and (T0298)E213.C only 0.000 apart, marking (T0298)E213.C as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1005739103.pdb -s /var/tmp/to_scwrl_1005739103.seq -o /var/tmp/from_scwrl_1005739103.pdb > /var/tmp/scwrl_1005739103.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1005739103.pdb
# conformation set from SCWRL output
# naming current conformation CaspIta-FOX_TS2-scwrl
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1188164307.pdb -s /var/tmp/to_scwrl_1188164307.seq -o /var/tmp/from_scwrl_1188164307.pdb > /var/tmp/scwrl_1188164307.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1188164307.pdb
# conformation set from SCWRL output
# naming current conformation CaspIta-FOX_TS3-scwrl
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1477019679.pdb -s /var/tmp/to_scwrl_1477019679.seq -o /var/tmp/from_scwrl_1477019679.pdb > /var/tmp/scwrl_1477019679.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1477019679.pdb
# conformation set from SCWRL output
# naming current conformation CaspIta-FOX_TS4-scwrl
# ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation CaspIta-FOX_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1041540241.pdb -s /var/tmp/to_scwrl_1041540241.seq -o /var/tmp/from_scwrl_1041540241.pdb > /var/tmp/scwrl_1041540241.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1041540241.pdb
# conformation set from SCWRL output
# naming current conformation CaspIta-FOX_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Distill_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1009006710.pdb -s /var/tmp/to_scwrl_1009006710.seq -o /var/tmp/from_scwrl_1009006710.pdb > /var/tmp/scwrl_1009006710.log
Error: Couldn't open file /var/tmp/from_scwrl_1009006710.pdb or /var/tmp/from_scwrl_1009006710.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1009006710_b.pdb or decoys//var/tmp/from_scwrl_1009006710_b.pdb.gz for input
Trying /var/tmp/from_scwrl_1009006710_b.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1009006710_b.pdb or /var/tmp/from_scwrl_1009006710_b.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1009006710_a.pdb or decoys//var/tmp/from_scwrl_1009006710_a.pdb.gz for input
Trying /var/tmp/from_scwrl_1009006710_a.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1009006710_a.pdb or /var/tmp/from_scwrl_1009006710_a.pdb.gz for input
Error: can't open any of /var/tmp/from_scwrl_1009006710.pdb or /var/tmp/from_scwrl_1009006710_b.pdb or /var/tmp/from_scwrl_1009006710_a.pdb
Error: no new SCWRL conformation added
# naming current conformation Distill_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Distill_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_166591446.pdb -s /var/tmp/to_scwrl_166591446.seq -o /var/tmp/from_scwrl_166591446.pdb > /var/tmp/scwrl_166591446.log
Error: Couldn't open file /var/tmp/from_scwrl_166591446.pdb or /var/tmp/from_scwrl_166591446.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_166591446_b.pdb or decoys//var/tmp/from_scwrl_166591446_b.pdb.gz for input
Trying /var/tmp/from_scwrl_166591446_b.pdb
Error: Couldn't open file /var/tmp/from_scwrl_166591446_b.pdb or /var/tmp/from_scwrl_166591446_b.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_166591446_a.pdb or decoys//var/tmp/from_scwrl_166591446_a.pdb.gz for input
Trying /var/tmp/from_scwrl_166591446_a.pdb
Error: Couldn't open file /var/tmp/from_scwrl_166591446_a.pdb or /var/tmp/from_scwrl_166591446_a.pdb.gz for input
Error: can't open any of /var/tmp/from_scwrl_166591446.pdb or /var/tmp/from_scwrl_166591446_b.pdb or /var/tmp/from_scwrl_166591446_a.pdb
Error: no new SCWRL conformation added
# naming current conformation Distill_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Distill_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1519715671.pdb -s /var/tmp/to_scwrl_1519715671.seq -o /var/tmp/from_scwrl_1519715671.pdb > /var/tmp/scwrl_1519715671.log
Error: Couldn't open file /var/tmp/from_scwrl_1519715671.pdb or /var/tmp/from_scwrl_1519715671.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1519715671_b.pdb or decoys//var/tmp/from_scwrl_1519715671_b.pdb.gz for input
Trying /var/tmp/from_scwrl_1519715671_b.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1519715671_b.pdb or /var/tmp/from_scwrl_1519715671_b.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1519715671_a.pdb or decoys//var/tmp/from_scwrl_1519715671_a.pdb.gz for input
Trying /var/tmp/from_scwrl_1519715671_a.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1519715671_a.pdb or /var/tmp/from_scwrl_1519715671_a.pdb.gz for input
Error: can't open any of /var/tmp/from_scwrl_1519715671.pdb or /var/tmp/from_scwrl_1519715671_b.pdb or /var/tmp/from_scwrl_1519715671_a.pdb
Error: no new SCWRL conformation added
# naming current conformation Distill_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Distill_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1422265683.pdb -s /var/tmp/to_scwrl_1422265683.seq -o /var/tmp/from_scwrl_1422265683.pdb > /var/tmp/scwrl_1422265683.log
Error: Couldn't open file /var/tmp/from_scwrl_1422265683.pdb or /var/tmp/from_scwrl_1422265683.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1422265683_b.pdb or decoys//var/tmp/from_scwrl_1422265683_b.pdb.gz for input
Trying /var/tmp/from_scwrl_1422265683_b.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1422265683_b.pdb or /var/tmp/from_scwrl_1422265683_b.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1422265683_a.pdb or decoys//var/tmp/from_scwrl_1422265683_a.pdb.gz for input
Trying /var/tmp/from_scwrl_1422265683_a.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1422265683_a.pdb or /var/tmp/from_scwrl_1422265683_a.pdb.gz for input
Error: can't open any of /var/tmp/from_scwrl_1422265683.pdb or /var/tmp/from_scwrl_1422265683_b.pdb or /var/tmp/from_scwrl_1422265683_a.pdb
Error: no new SCWRL conformation added
# naming current conformation Distill_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Distill_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1250256611.pdb -s /var/tmp/to_scwrl_1250256611.seq -o /var/tmp/from_scwrl_1250256611.pdb > /var/tmp/scwrl_1250256611.log
Error: Couldn't open file /var/tmp/from_scwrl_1250256611.pdb or /var/tmp/from_scwrl_1250256611.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1250256611_b.pdb or decoys//var/tmp/from_scwrl_1250256611_b.pdb.gz for input
Trying /var/tmp/from_scwrl_1250256611_b.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1250256611_b.pdb or /var/tmp/from_scwrl_1250256611_b.pdb.gz for input
Warning: Couldn't open file decoys//var/tmp/from_scwrl_1250256611_a.pdb or decoys//var/tmp/from_scwrl_1250256611_a.pdb.gz for input
Trying /var/tmp/from_scwrl_1250256611_a.pdb
Error: Couldn't open file /var/tmp/from_scwrl_1250256611_a.pdb or /var/tmp/from_scwrl_1250256611_a.pdb.gz for input
Error: can't open any of /var/tmp/from_scwrl_1250256611.pdb or /var/tmp/from_scwrl_1250256611_b.pdb or /var/tmp/from_scwrl_1250256611_a.pdb
Error: no new SCWRL conformation added
# naming current conformation Distill_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1874748275.pdb -s /var/tmp/to_scwrl_1874748275.seq -o /var/tmp/from_scwrl_1874748275.pdb > /var/tmp/scwrl_1874748275.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1874748275.pdb
# conformation set from SCWRL output
# naming current conformation FAMSD_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_954635321.pdb -s /var/tmp/to_scwrl_954635321.seq -o /var/tmp/from_scwrl_954635321.pdb > /var/tmp/scwrl_954635321.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_954635321.pdb
# conformation set from SCWRL output
# naming current conformation FAMSD_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1861807256.pdb -s /var/tmp/to_scwrl_1861807256.seq -o /var/tmp/from_scwrl_1861807256.pdb > /var/tmp/scwrl_1861807256.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1861807256.pdb
# conformation set from SCWRL output
# naming current conformation FAMSD_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FAMSD_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1111822090.pdb -s /var/tmp/to_scwrl_1111822090.seq -o /var/tmp/from_scwrl_1111822090.pdb > /var/tmp/scwrl_1111822090.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1111822090.pdb
# conformation set from SCWRL output
# naming current conformation FAMSD_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation FAMSD_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1076347983.pdb -s /var/tmp/to_scwrl_1076347983.seq -o /var/tmp/from_scwrl_1076347983.pdb > /var/tmp/scwrl_1076347983.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1076347983.pdb
# conformation set from SCWRL output
# naming current conformation FAMSD_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_170833045.pdb -s /var/tmp/to_scwrl_170833045.seq -o /var/tmp/from_scwrl_170833045.pdb > /var/tmp/scwrl_170833045.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_170833045.pdb
# conformation set from SCWRL output
# naming current conformation FAMS_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FAMS_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1856440418.pdb -s /var/tmp/to_scwrl_1856440418.seq -o /var/tmp/from_scwrl_1856440418.pdb > /var/tmp/scwrl_1856440418.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1856440418.pdb
# conformation set from SCWRL output
# naming current conformation FAMS_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_417219130.pdb -s /var/tmp/to_scwrl_417219130.seq -o /var/tmp/from_scwrl_417219130.pdb > /var/tmp/scwrl_417219130.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_417219130.pdb
# conformation set from SCWRL output
# naming current conformation FAMS_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FAMS_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1751124548.pdb -s /var/tmp/to_scwrl_1751124548.seq -o /var/tmp/from_scwrl_1751124548.pdb > /var/tmp/scwrl_1751124548.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1751124548.pdb
# conformation set from SCWRL output
# naming current conformation FAMS_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1
# Found a chain break before 328
# copying to AlignedFragments data structure
# naming current conformation FAMS_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_319556121.pdb -s /var/tmp/to_scwrl_319556121.seq -o /var/tmp/from_scwrl_319556121.pdb > /var/tmp/scwrl_319556121.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_319556121.pdb
# conformation set from SCWRL output
# naming current conformation FAMS_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1248297527.pdb -s /var/tmp/to_scwrl_1248297527.seq -o /var/tmp/from_scwrl_1248297527.pdb > /var/tmp/scwrl_1248297527.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1248297527.pdb
# conformation set from SCWRL output
# naming current conformation FOLDpro_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1
# Found a chain break before 329
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_210569788.pdb -s /var/tmp/to_scwrl_210569788.seq -o /var/tmp/from_scwrl_210569788.pdb > /var/tmp/scwrl_210569788.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_210569788.pdb
# conformation set from SCWRL output
# naming current conformation FOLDpro_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1
# Found a chain break before 330
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_786949257.pdb -s /var/tmp/to_scwrl_786949257.seq -o /var/tmp/from_scwrl_786949257.pdb > /var/tmp/scwrl_786949257.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786949257.pdb
# conformation set from SCWRL output
# naming current conformation FOLDpro_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1
# Found a chain break before 254
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_636594498.pdb -s /var/tmp/to_scwrl_636594498.seq -o /var/tmp/from_scwrl_636594498.pdb > /var/tmp/scwrl_636594498.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_636594498.pdb
# conformation set from SCWRL output
# naming current conformation FOLDpro_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1
# Found a chain break before 289
# copying to AlignedFragments data structure
# naming current conformation FOLDpro_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1560906627.pdb -s /var/tmp/to_scwrl_1560906627.seq -o /var/tmp/from_scwrl_1560906627.pdb > /var/tmp/scwrl_1560906627.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1560906627.pdb
# conformation set from SCWRL output
# naming current conformation FOLDpro_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1496998725.pdb -s /var/tmp/to_scwrl_1496998725.seq -o /var/tmp/from_scwrl_1496998725.pdb > /var/tmp/scwrl_1496998725.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1496998725.pdb
# conformation set from SCWRL output
# naming current conformation FORTE1_AL1-scwrl
# ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_476642255.pdb -s /var/tmp/to_scwrl_476642255.seq -o /var/tmp/from_scwrl_476642255.pdb > /var/tmp/scwrl_476642255.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_476642255.pdb
# conformation set from SCWRL output
# naming current conformation FORTE1_AL2-scwrl
# ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1836208622.pdb -s /var/tmp/to_scwrl_1836208622.seq -o /var/tmp/from_scwrl_1836208622.pdb > /var/tmp/scwrl_1836208622.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1836208622.pdb
# conformation set from SCWRL output
# naming current conformation FORTE1_AL3-scwrl
# ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_298500389.pdb -s /var/tmp/to_scwrl_298500389.seq -o /var/tmp/from_scwrl_298500389.pdb > /var/tmp/scwrl_298500389.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_298500389.pdb
# conformation set from SCWRL output
# naming current conformation FORTE1_AL4-scwrl
# ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1
Skipped atom 748, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
Skipped atom 750, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL5.pdb.gz
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE1_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_470912013.pdb -s /var/tmp/to_scwrl_470912013.seq -o /var/tmp/from_scwrl_470912013.pdb > /var/tmp/scwrl_470912013.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_470912013.pdb
# conformation set from SCWRL output
# naming current conformation FORTE1_AL5-scwrl
# ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1704349931.pdb -s /var/tmp/to_scwrl_1704349931.seq -o /var/tmp/from_scwrl_1704349931.pdb > /var/tmp/scwrl_1704349931.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1704349931.pdb
# conformation set from SCWRL output
# naming current conformation FORTE2_AL1-scwrl
# ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1014479068.pdb -s /var/tmp/to_scwrl_1014479068.seq -o /var/tmp/from_scwrl_1014479068.pdb > /var/tmp/scwrl_1014479068.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1014479068.pdb
# conformation set from SCWRL output
# naming current conformation FORTE2_AL2-scwrl
# ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1476651116.pdb -s /var/tmp/to_scwrl_1476651116.seq -o /var/tmp/from_scwrl_1476651116.pdb > /var/tmp/scwrl_1476651116.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1476651116.pdb
# conformation set from SCWRL output
# naming current conformation FORTE2_AL3-scwrl
# ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_745030592.pdb -s /var/tmp/to_scwrl_745030592.seq -o /var/tmp/from_scwrl_745030592.pdb > /var/tmp/scwrl_745030592.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_745030592.pdb
# conformation set from SCWRL output
# naming current conformation FORTE2_AL4-scwrl
# ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1
Skipped atom 748, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz
Skipped atom 750, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL5.pdb.gz
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FORTE2_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_344015100.pdb -s /var/tmp/to_scwrl_344015100.seq -o /var/tmp/from_scwrl_344015100.pdb > /var/tmp/scwrl_344015100.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_344015100.pdb
# conformation set from SCWRL output
# naming current conformation FORTE2_AL5-scwrl
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1
# Found a chain break before 332
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_370707710.pdb -s /var/tmp/to_scwrl_370707710.seq -o /var/tmp/from_scwrl_370707710.pdb > /var/tmp/scwrl_370707710.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_370707710.pdb
# conformation set from SCWRL output
# naming current conformation FPSOLVER-SERVER_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1
# Found a chain break before 329
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1754037301.pdb -s /var/tmp/to_scwrl_1754037301.seq -o /var/tmp/from_scwrl_1754037301.pdb > /var/tmp/scwrl_1754037301.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1754037301.pdb
# conformation set from SCWRL output
# naming current conformation FPSOLVER-SERVER_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1
# Found a chain break before 325
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_510606547.pdb -s /var/tmp/to_scwrl_510606547.seq -o /var/tmp/from_scwrl_510606547.pdb > /var/tmp/scwrl_510606547.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_510606547.pdb
# conformation set from SCWRL output
# naming current conformation FPSOLVER-SERVER_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1
# Found a chain break before 331
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1890423381.pdb -s /var/tmp/to_scwrl_1890423381.seq -o /var/tmp/from_scwrl_1890423381.pdb > /var/tmp/scwrl_1890423381.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1890423381.pdb
# conformation set from SCWRL output
# naming current conformation FPSOLVER-SERVER_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1
# Found a chain break before 329
# copying to AlignedFragments data structure
# naming current conformation FPSOLVER-SERVER_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1028819338.pdb -s /var/tmp/to_scwrl_1028819338.seq -o /var/tmp/from_scwrl_1028819338.pdb > /var/tmp/scwrl_1028819338.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1028819338.pdb
# conformation set from SCWRL output
# naming current conformation FPSOLVER-SERVER_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1760863158.pdb -s /var/tmp/to_scwrl_1760863158.seq -o /var/tmp/from_scwrl_1760863158.pdb > /var/tmp/scwrl_1760863158.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1760863158.pdb
# conformation set from SCWRL output
# naming current conformation FUGMOD_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1617688010.pdb -s /var/tmp/to_scwrl_1617688010.seq -o /var/tmp/from_scwrl_1617688010.pdb > /var/tmp/scwrl_1617688010.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1617688010.pdb
# conformation set from SCWRL output
# naming current conformation FUGMOD_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1983454659.pdb -s /var/tmp/to_scwrl_1983454659.seq -o /var/tmp/from_scwrl_1983454659.pdb > /var/tmp/scwrl_1983454659.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1983454659.pdb
# conformation set from SCWRL output
# naming current conformation FUGMOD_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1475186767.pdb -s /var/tmp/to_scwrl_1475186767.seq -o /var/tmp/from_scwrl_1475186767.pdb > /var/tmp/scwrl_1475186767.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475186767.pdb
# conformation set from SCWRL output
# naming current conformation FUGMOD_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGMOD_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_582026454.pdb -s /var/tmp/to_scwrl_582026454.seq -o /var/tmp/from_scwrl_582026454.pdb > /var/tmp/scwrl_582026454.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_582026454.pdb
# conformation set from SCWRL output
# naming current conformation FUGMOD_TS5-scwrl
# ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_912318996.pdb -s /var/tmp/to_scwrl_912318996.seq -o /var/tmp/from_scwrl_912318996.pdb > /var/tmp/scwrl_912318996.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_912318996.pdb
# conformation set from SCWRL output
# naming current conformation FUGUE_AL1-scwrl
# ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1646019812.pdb -s /var/tmp/to_scwrl_1646019812.seq -o /var/tmp/from_scwrl_1646019812.pdb > /var/tmp/scwrl_1646019812.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1646019812.pdb
# conformation set from SCWRL output
# naming current conformation FUGUE_AL2-scwrl
# ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_290983226.pdb -s /var/tmp/to_scwrl_290983226.seq -o /var/tmp/from_scwrl_290983226.pdb > /var/tmp/scwrl_290983226.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_290983226.pdb
# conformation set from SCWRL output
# naming current conformation FUGUE_AL3-scwrl
# ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1329538125.pdb -s /var/tmp/to_scwrl_1329538125.seq -o /var/tmp/from_scwrl_1329538125.pdb > /var/tmp/scwrl_1329538125.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1329538125.pdb
# conformation set from SCWRL output
# naming current conformation FUGUE_AL4-scwrl
# ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation FUGUE_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1249660713.pdb -s /var/tmp/to_scwrl_1249660713.seq -o /var/tmp/from_scwrl_1249660713.pdb > /var/tmp/scwrl_1249660713.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1249660713.pdb
# conformation set from SCWRL output
# naming current conformation FUGUE_AL5-scwrl
# ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_610539347.pdb -s /var/tmp/to_scwrl_610539347.seq -o /var/tmp/from_scwrl_610539347.pdb > /var/tmp/scwrl_610539347.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_610539347.pdb
# conformation set from SCWRL output
# naming current conformation FUNCTION_TS1-scwrl
# ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_430352006.pdb -s /var/tmp/to_scwrl_430352006.seq -o /var/tmp/from_scwrl_430352006.pdb > /var/tmp/scwrl_430352006.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_430352006.pdb
# conformation set from SCWRL output
# naming current conformation FUNCTION_TS2-scwrl
# ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1460230502.pdb -s /var/tmp/to_scwrl_1460230502.seq -o /var/tmp/from_scwrl_1460230502.pdb > /var/tmp/scwrl_1460230502.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1460230502.pdb
# conformation set from SCWRL output
# naming current conformation FUNCTION_TS3-scwrl
# ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1397488604.pdb -s /var/tmp/to_scwrl_1397488604.seq -o /var/tmp/from_scwrl_1397488604.pdb > /var/tmp/scwrl_1397488604.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1397488604.pdb
# conformation set from SCWRL output
# naming current conformation FUNCTION_TS4-scwrl
# ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation FUNCTION_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1066946505.pdb -s /var/tmp/to_scwrl_1066946505.seq -o /var/tmp/from_scwrl_1066946505.pdb > /var/tmp/scwrl_1066946505.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066946505.pdb
# conformation set from SCWRL output
# naming current conformation FUNCTION_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Frankenstein_TS5.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation Frankenstein_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_873653483.pdb -s /var/tmp/to_scwrl_873653483.seq -o /var/tmp/from_scwrl_873653483.pdb > /var/tmp/scwrl_873653483.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_873653483.pdb
# conformation set from SCWRL output
# naming current conformation Frankenstein_TS5-scwrl
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation GeneSilicoMetaServer_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_747003683.pdb -s /var/tmp/to_scwrl_747003683.seq -o /var/tmp/from_scwrl_747003683.pdb > /var/tmp/scwrl_747003683.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_747003683.pdb
# conformation set from SCWRL output
# naming current conformation GeneSilicoMetaServer_TS1-scwrl
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1543588759.pdb -s /var/tmp/to_scwrl_1543588759.seq -o /var/tmp/from_scwrl_1543588759.pdb > /var/tmp/scwrl_1543588759.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543588759.pdb
# conformation set from SCWRL output
# naming current conformation GeneSilicoMetaServer_TS2-scwrl
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_562378458.pdb -s /var/tmp/to_scwrl_562378458.seq -o /var/tmp/from_scwrl_562378458.pdb > /var/tmp/scwrl_562378458.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_562378458.pdb
# conformation set from SCWRL output
# naming current conformation GeneSilicoMetaServer_TS3-scwrl
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1045504072.pdb -s /var/tmp/to_scwrl_1045504072.seq -o /var/tmp/from_scwrl_1045504072.pdb > /var/tmp/scwrl_1045504072.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1045504072.pdb
# conformation set from SCWRL output
# naming current conformation GeneSilicoMetaServer_TS4-scwrl
# ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation GeneSilicoMetaServer_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2014500772.pdb -s /var/tmp/to_scwrl_2014500772.seq -o /var/tmp/from_scwrl_2014500772.pdb > /var/tmp/scwrl_2014500772.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2014500772.pdb
# conformation set from SCWRL output
# naming current conformation GeneSilicoMetaServer_TS5-scwrl
# ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1
# Found a chain break before 332
# copying to AlignedFragments data structure
# naming current conformation HHpred1_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_119244742.pdb -s /var/tmp/to_scwrl_119244742.seq -o /var/tmp/from_scwrl_119244742.pdb > /var/tmp/scwrl_119244742.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_119244742.pdb
# conformation set from SCWRL output
# naming current conformation HHpred1_TS1-scwrl
# ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation HHpred2_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2059983140.pdb -s /var/tmp/to_scwrl_2059983140.seq -o /var/tmp/from_scwrl_2059983140.pdb > /var/tmp/scwrl_2059983140.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2059983140.pdb
# conformation set from SCWRL output
# naming current conformation HHpred2_TS1-scwrl
# ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation HHpred3_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1343668241.pdb -s /var/tmp/to_scwrl_1343668241.seq -o /var/tmp/from_scwrl_1343668241.pdb > /var/tmp/scwrl_1343668241.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1343668241.pdb
# conformation set from SCWRL output
# naming current conformation HHpred3_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_864275334.pdb -s /var/tmp/to_scwrl_864275334.seq -o /var/tmp/from_scwrl_864275334.pdb > /var/tmp/scwrl_864275334.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_864275334.pdb
# conformation set from SCWRL output
# naming current conformation Huber-Torda-Server_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_256514593.pdb -s /var/tmp/to_scwrl_256514593.seq -o /var/tmp/from_scwrl_256514593.pdb > /var/tmp/scwrl_256514593.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_256514593.pdb
# conformation set from SCWRL output
# naming current conformation Huber-Torda-Server_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1714375952.pdb -s /var/tmp/to_scwrl_1714375952.seq -o /var/tmp/from_scwrl_1714375952.pdb > /var/tmp/scwrl_1714375952.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1714375952.pdb
# conformation set from SCWRL output
# naming current conformation Huber-Torda-Server_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_470828988.pdb -s /var/tmp/to_scwrl_470828988.seq -o /var/tmp/from_scwrl_470828988.pdb > /var/tmp/scwrl_470828988.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_470828988.pdb
# conformation set from SCWRL output
# naming current conformation Huber-Torda-Server_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Huber-Torda-Server_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_767121140.pdb -s /var/tmp/to_scwrl_767121140.seq -o /var/tmp/from_scwrl_767121140.pdb > /var/tmp/scwrl_767121140.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_767121140.pdb
# conformation set from SCWRL output
# naming current conformation Huber-Torda-Server_TS5-scwrl
# ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1457315686.pdb -s /var/tmp/to_scwrl_1457315686.seq -o /var/tmp/from_scwrl_1457315686.pdb > /var/tmp/scwrl_1457315686.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1457315686.pdb
# conformation set from SCWRL output
# naming current conformation LOOPP_TS1-scwrl
# ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1499648326.pdb -s /var/tmp/to_scwrl_1499648326.seq -o /var/tmp/from_scwrl_1499648326.pdb > /var/tmp/scwrl_1499648326.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1499648326.pdb
# conformation set from SCWRL output
# naming current conformation LOOPP_TS2-scwrl
# ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_380500651.pdb -s /var/tmp/to_scwrl_380500651.seq -o /var/tmp/from_scwrl_380500651.pdb > /var/tmp/scwrl_380500651.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_380500651.pdb
# conformation set from SCWRL output
# naming current conformation LOOPP_TS3-scwrl
# ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_927520050.pdb -s /var/tmp/to_scwrl_927520050.seq -o /var/tmp/from_scwrl_927520050.pdb > /var/tmp/scwrl_927520050.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_927520050.pdb
# conformation set from SCWRL output
# naming current conformation LOOPP_TS4-scwrl
# ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation LOOPP_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1335619338.pdb -s /var/tmp/to_scwrl_1335619338.seq -o /var/tmp/from_scwrl_1335619338.pdb > /var/tmp/scwrl_1335619338.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1335619338.pdb
# conformation set from SCWRL output
# naming current conformation LOOPP_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1855687418.pdb -s /var/tmp/to_scwrl_1855687418.seq -o /var/tmp/from_scwrl_1855687418.pdb > /var/tmp/scwrl_1855687418.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1855687418.pdb
# conformation set from SCWRL output
# naming current conformation Ma-OPUS-server_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1509546504.pdb -s /var/tmp/to_scwrl_1509546504.seq -o /var/tmp/from_scwrl_1509546504.pdb > /var/tmp/scwrl_1509546504.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1509546504.pdb
# conformation set from SCWRL output
# naming current conformation Ma-OPUS-server_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_100454687.pdb -s /var/tmp/to_scwrl_100454687.seq -o /var/tmp/from_scwrl_100454687.pdb > /var/tmp/scwrl_100454687.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_100454687.pdb
# conformation set from SCWRL output
# naming current conformation Ma-OPUS-server_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1
# Found a chain break before 326
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1354223583.pdb -s /var/tmp/to_scwrl_1354223583.seq -o /var/tmp/from_scwrl_1354223583.pdb > /var/tmp/scwrl_1354223583.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1354223583.pdb
# conformation set from SCWRL output
# naming current conformation Ma-OPUS-server_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1
# Found a chain break before 331
# copying to AlignedFragments data structure
# naming current conformation Ma-OPUS-server_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1800529730.pdb -s /var/tmp/to_scwrl_1800529730.seq -o /var/tmp/from_scwrl_1800529730.pdb > /var/tmp/scwrl_1800529730.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1800529730.pdb
# conformation set from SCWRL output
# naming current conformation Ma-OPUS-server_TS5-scwrl
# ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1429992812.pdb -s /var/tmp/to_scwrl_1429992812.seq -o /var/tmp/from_scwrl_1429992812.pdb > /var/tmp/scwrl_1429992812.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1429992812.pdb
# conformation set from SCWRL output
# naming current conformation MetaTasser_TS1-scwrl
# ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1
# Found a chain break before 321
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_456400651.pdb -s /var/tmp/to_scwrl_456400651.seq -o /var/tmp/from_scwrl_456400651.pdb > /var/tmp/scwrl_456400651.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_456400651.pdb
# conformation set from SCWRL output
# naming current conformation MetaTasser_TS2-scwrl
# ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_263585430.pdb -s /var/tmp/to_scwrl_263585430.seq -o /var/tmp/from_scwrl_263585430.pdb > /var/tmp/scwrl_263585430.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_263585430.pdb
# conformation set from SCWRL output
# naming current conformation MetaTasser_TS3-scwrl
# ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1860344819.pdb -s /var/tmp/to_scwrl_1860344819.seq -o /var/tmp/from_scwrl_1860344819.pdb > /var/tmp/scwrl_1860344819.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1860344819.pdb
# conformation set from SCWRL output
# naming current conformation MetaTasser_TS4-scwrl
# ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1
# Found a chain break before 332
# copying to AlignedFragments data structure
# naming current conformation MetaTasser_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1916631153.pdb -s /var/tmp/to_scwrl_1916631153.seq -o /var/tmp/from_scwrl_1916631153.pdb > /var/tmp/scwrl_1916631153.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1916631153.pdb
# conformation set from SCWRL output
# naming current conformation MetaTasser_TS5-scwrl
# ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation NN_PUT_lab_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1661074034.pdb -s /var/tmp/to_scwrl_1661074034.seq -o /var/tmp/from_scwrl_1661074034.pdb > /var/tmp/scwrl_1661074034.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1661074034.pdb
# conformation set from SCWRL output
# naming current conformation NN_PUT_lab_TS1-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_779807677.pdb -s /var/tmp/to_scwrl_779807677.seq -o /var/tmp/from_scwrl_779807677.pdb > /var/tmp/scwrl_779807677.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_779807677.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO-AB_TS1-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_642800989.pdb -s /var/tmp/to_scwrl_642800989.seq -o /var/tmp/from_scwrl_642800989.pdb > /var/tmp/scwrl_642800989.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642800989.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO-AB_TS2-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_260594071.pdb -s /var/tmp/to_scwrl_260594071.seq -o /var/tmp/from_scwrl_260594071.pdb > /var/tmp/scwrl_260594071.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_260594071.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO-AB_TS3-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_175912789.pdb -s /var/tmp/to_scwrl_175912789.seq -o /var/tmp/from_scwrl_175912789.pdb > /var/tmp/scwrl_175912789.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_175912789.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO-AB_TS4-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1
# naming current conformation PROTINFO-AB_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1205179446.pdb -s /var/tmp/to_scwrl_1205179446.seq -o /var/tmp/from_scwrl_1205179446.pdb > /var/tmp/scwrl_1205179446.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1205179446.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO-AB_TS5-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1306098142.pdb -s /var/tmp/to_scwrl_1306098142.seq -o /var/tmp/from_scwrl_1306098142.pdb > /var/tmp/scwrl_1306098142.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1306098142.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO_TS1-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_42929914.pdb -s /var/tmp/to_scwrl_42929914.seq -o /var/tmp/from_scwrl_42929914.pdb > /var/tmp/scwrl_42929914.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_42929914.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO_TS2-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1
# Found a chain break before 317
# copying to AlignedFragments data structure
# naming current conformation PROTINFO_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1324424189.pdb -s /var/tmp/to_scwrl_1324424189.seq -o /var/tmp/from_scwrl_1324424189.pdb > /var/tmp/scwrl_1324424189.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1324424189.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO_TS3-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1218597635.pdb -s /var/tmp/to_scwrl_1218597635.seq -o /var/tmp/from_scwrl_1218597635.pdb > /var/tmp/scwrl_1218597635.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1218597635.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO_TS4-scwrl
# ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1
# naming current conformation PROTINFO_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1386598156.pdb -s /var/tmp/to_scwrl_1386598156.seq -o /var/tmp/from_scwrl_1386598156.pdb > /var/tmp/scwrl_1386598156.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1386598156.pdb
# conformation set from SCWRL output
# naming current conformation PROTINFO_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_41215876.pdb -s /var/tmp/to_scwrl_41215876.seq -o /var/tmp/from_scwrl_41215876.pdb > /var/tmp/scwrl_41215876.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_41215876.pdb
# conformation set from SCWRL output
# naming current conformation Pcons6_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1475112229.pdb -s /var/tmp/to_scwrl_1475112229.seq -o /var/tmp/from_scwrl_1475112229.pdb > /var/tmp/scwrl_1475112229.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475112229.pdb
# conformation set from SCWRL output
# naming current conformation Pcons6_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_953490462.pdb -s /var/tmp/to_scwrl_953490462.seq -o /var/tmp/from_scwrl_953490462.pdb > /var/tmp/scwrl_953490462.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_953490462.pdb
# conformation set from SCWRL output
# naming current conformation Pcons6_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_512044865.pdb -s /var/tmp/to_scwrl_512044865.seq -o /var/tmp/from_scwrl_512044865.pdb > /var/tmp/scwrl_512044865.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_512044865.pdb
# conformation set from SCWRL output
# naming current conformation Pcons6_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pcons6_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_94749722.pdb -s /var/tmp/to_scwrl_94749722.seq -o /var/tmp/from_scwrl_94749722.pdb > /var/tmp/scwrl_94749722.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_94749722.pdb
# conformation set from SCWRL output
# naming current conformation Pcons6_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Phyre-1_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_263322501.pdb -s /var/tmp/to_scwrl_263322501.seq -o /var/tmp/from_scwrl_263322501.pdb > /var/tmp/scwrl_263322501.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_263322501.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-1_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2011693191.pdb -s /var/tmp/to_scwrl_2011693191.seq -o /var/tmp/from_scwrl_2011693191.pdb > /var/tmp/scwrl_2011693191.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2011693191.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-2_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_475250374.pdb -s /var/tmp/to_scwrl_475250374.seq -o /var/tmp/from_scwrl_475250374.pdb > /var/tmp/scwrl_475250374.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_475250374.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-2_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1190842551.pdb -s /var/tmp/to_scwrl_1190842551.seq -o /var/tmp/from_scwrl_1190842551.pdb > /var/tmp/scwrl_1190842551.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1190842551.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-2_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1199828882.pdb -s /var/tmp/to_scwrl_1199828882.seq -o /var/tmp/from_scwrl_1199828882.pdb > /var/tmp/scwrl_1199828882.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1199828882.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-2_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation Phyre-2_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_183454145.pdb -s /var/tmp/to_scwrl_183454145.seq -o /var/tmp/from_scwrl_183454145.pdb > /var/tmp/scwrl_183454145.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_183454145.pdb
# conformation set from SCWRL output
# naming current conformation Phyre-2_TS5-scwrl
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_552905409.pdb -s /var/tmp/to_scwrl_552905409.seq -o /var/tmp/from_scwrl_552905409.pdb > /var/tmp/scwrl_552905409.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_552905409.pdb
# conformation set from SCWRL output
# naming current conformation Pmodeller6_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1300283569.pdb -s /var/tmp/to_scwrl_1300283569.seq -o /var/tmp/from_scwrl_1300283569.pdb > /var/tmp/scwrl_1300283569.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1300283569.pdb
# conformation set from SCWRL output
# naming current conformation Pmodeller6_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1537677729.pdb -s /var/tmp/to_scwrl_1537677729.seq -o /var/tmp/from_scwrl_1537677729.pdb > /var/tmp/scwrl_1537677729.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1537677729.pdb
# conformation set from SCWRL output
# naming current conformation Pmodeller6_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_205951492.pdb -s /var/tmp/to_scwrl_205951492.seq -o /var/tmp/from_scwrl_205951492.pdb > /var/tmp/scwrl_205951492.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_205951492.pdb
# conformation set from SCWRL output
# naming current conformation Pmodeller6_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation Pmodeller6_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_582792735.pdb -s /var/tmp/to_scwrl_582792735.seq -o /var/tmp/from_scwrl_582792735.pdb > /var/tmp/scwrl_582792735.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_582792735.pdb
# conformation set from SCWRL output
# naming current conformation Pmodeller6_TS5-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1994078380.pdb -s /var/tmp/to_scwrl_1994078380.seq -o /var/tmp/from_scwrl_1994078380.pdb > /var/tmp/scwrl_1994078380.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1994078380.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR-ACE_TS1-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_469536922.pdb -s /var/tmp/to_scwrl_469536922.seq -o /var/tmp/from_scwrl_469536922.pdb > /var/tmp/scwrl_469536922.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_469536922.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR-ACE_TS2-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_295653907.pdb -s /var/tmp/to_scwrl_295653907.seq -o /var/tmp/from_scwrl_295653907.pdb > /var/tmp/scwrl_295653907.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_295653907.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR-ACE_TS3-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1763225886.pdb -s /var/tmp/to_scwrl_1763225886.seq -o /var/tmp/from_scwrl_1763225886.pdb > /var/tmp/scwrl_1763225886.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1763225886.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR-ACE_TS4-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation RAPTOR-ACE_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2130610957.pdb -s /var/tmp/to_scwrl_2130610957.seq -o /var/tmp/from_scwrl_2130610957.pdb > /var/tmp/scwrl_2130610957.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2130610957.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR-ACE_TS5-scwrl
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1
# Found a chain break before 317
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1075461583.pdb -s /var/tmp/to_scwrl_1075461583.seq -o /var/tmp/from_scwrl_1075461583.pdb > /var/tmp/scwrl_1075461583.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1075461583.pdb
# conformation set from SCWRL output
# naming current conformation RAPTORESS_TS1-scwrl
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1
# Found a chain break before 312
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_258543228.pdb -s /var/tmp/to_scwrl_258543228.seq -o /var/tmp/from_scwrl_258543228.pdb > /var/tmp/scwrl_258543228.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_258543228.pdb
# conformation set from SCWRL output
# naming current conformation RAPTORESS_TS2-scwrl
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1
# Found a chain break before 310
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_243721381.pdb -s /var/tmp/to_scwrl_243721381.seq -o /var/tmp/from_scwrl_243721381.pdb > /var/tmp/scwrl_243721381.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_243721381.pdb
# conformation set from SCWRL output
# naming current conformation RAPTORESS_TS3-scwrl
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1
# Found a chain break before 327
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1251374372.pdb -s /var/tmp/to_scwrl_1251374372.seq -o /var/tmp/from_scwrl_1251374372.pdb > /var/tmp/scwrl_1251374372.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1251374372.pdb
# conformation set from SCWRL output
# naming current conformation RAPTORESS_TS4-scwrl
# ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1
# Found a chain break before 331
# copying to AlignedFragments data structure
# naming current conformation RAPTORESS_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1463722674.pdb -s /var/tmp/to_scwrl_1463722674.seq -o /var/tmp/from_scwrl_1463722674.pdb > /var/tmp/scwrl_1463722674.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1463722674.pdb
# conformation set from SCWRL output
# naming current conformation RAPTORESS_TS5-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1
# Found a chain break before 326
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1549819523.pdb -s /var/tmp/to_scwrl_1549819523.seq -o /var/tmp/from_scwrl_1549819523.pdb > /var/tmp/scwrl_1549819523.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1549819523.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR_TS1-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1294304287.pdb -s /var/tmp/to_scwrl_1294304287.seq -o /var/tmp/from_scwrl_1294304287.pdb > /var/tmp/scwrl_1294304287.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1294304287.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR_TS2-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_640663217.pdb -s /var/tmp/to_scwrl_640663217.seq -o /var/tmp/from_scwrl_640663217.pdb > /var/tmp/scwrl_640663217.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_640663217.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR_TS3-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_620933513.pdb -s /var/tmp/to_scwrl_620933513.seq -o /var/tmp/from_scwrl_620933513.pdb > /var/tmp/scwrl_620933513.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_620933513.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR_TS4-scwrl
# ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation RAPTOR_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_533418797.pdb -s /var/tmp/to_scwrl_533418797.seq -o /var/tmp/from_scwrl_533418797.pdb > /var/tmp/scwrl_533418797.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_533418797.pdb
# conformation set from SCWRL output
# naming current conformation RAPTOR_TS5-scwrl
# ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1
# Found a chain break before 318
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_681879094.pdb -s /var/tmp/to_scwrl_681879094.seq -o /var/tmp/from_scwrl_681879094.pdb > /var/tmp/scwrl_681879094.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_681879094.pdb
# conformation set from SCWRL output
# naming current conformation ROBETTA_TS1-scwrl
# ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2096045742.pdb -s /var/tmp/to_scwrl_2096045742.seq -o /var/tmp/from_scwrl_2096045742.pdb > /var/tmp/scwrl_2096045742.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2096045742.pdb
# conformation set from SCWRL output
# naming current conformation ROBETTA_TS2-scwrl
# ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1
# Found a chain break before 317
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1486909258.pdb -s /var/tmp/to_scwrl_1486909258.seq -o /var/tmp/from_scwrl_1486909258.pdb > /var/tmp/scwrl_1486909258.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1486909258.pdb
# conformation set from SCWRL output
# naming current conformation ROBETTA_TS3-scwrl
# ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1
# Found a chain break before 315
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1193923958.pdb -s /var/tmp/to_scwrl_1193923958.seq -o /var/tmp/from_scwrl_1193923958.pdb > /var/tmp/scwrl_1193923958.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1193923958.pdb
# conformation set from SCWRL output
# naming current conformation ROBETTA_TS4-scwrl
# ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation ROBETTA_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_43311817.pdb -s /var/tmp/to_scwrl_43311817.seq -o /var/tmp/from_scwrl_43311817.pdb > /var/tmp/scwrl_43311817.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_43311817.pdb
# conformation set from SCWRL output
# naming current conformation ROBETTA_TS5-scwrl
# ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1750231759.pdb -s /var/tmp/to_scwrl_1750231759.seq -o /var/tmp/from_scwrl_1750231759.pdb > /var/tmp/scwrl_1750231759.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750231759.pdb
# conformation set from SCWRL output
# naming current conformation ROKKY_TS1-scwrl
# ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1058133503.pdb -s /var/tmp/to_scwrl_1058133503.seq -o /var/tmp/from_scwrl_1058133503.pdb > /var/tmp/scwrl_1058133503.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1058133503.pdb
# conformation set from SCWRL output
# naming current conformation ROKKY_TS2-scwrl
# ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_518562191.pdb -s /var/tmp/to_scwrl_518562191.seq -o /var/tmp/from_scwrl_518562191.pdb > /var/tmp/scwrl_518562191.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_518562191.pdb
# conformation set from SCWRL output
# naming current conformation ROKKY_TS3-scwrl
# ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_793590664.pdb -s /var/tmp/to_scwrl_793590664.seq -o /var/tmp/from_scwrl_793590664.pdb > /var/tmp/scwrl_793590664.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_793590664.pdb
# conformation set from SCWRL output
# naming current conformation ROKKY_TS4-scwrl
# ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation ROKKY_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_110478738.pdb -s /var/tmp/to_scwrl_110478738.seq -o /var/tmp/from_scwrl_110478738.pdb > /var/tmp/scwrl_110478738.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_110478738.pdb
# conformation set from SCWRL output
# naming current conformation ROKKY_TS5-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_702016337.pdb -s /var/tmp/to_scwrl_702016337.seq -o /var/tmp/from_scwrl_702016337.pdb > /var/tmp/scwrl_702016337.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_702016337.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T02_AL1-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1346496072.pdb -s /var/tmp/to_scwrl_1346496072.seq -o /var/tmp/from_scwrl_1346496072.pdb > /var/tmp/scwrl_1346496072.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1346496072.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T02_AL2-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1410762307.pdb -s /var/tmp/to_scwrl_1410762307.seq -o /var/tmp/from_scwrl_1410762307.pdb > /var/tmp/scwrl_1410762307.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1410762307.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T02_AL3-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_92210419.pdb -s /var/tmp/to_scwrl_92210419.seq -o /var/tmp/from_scwrl_92210419.pdb > /var/tmp/scwrl_92210419.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_92210419.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T02_AL4-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T02_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1552447564.pdb -s /var/tmp/to_scwrl_1552447564.seq -o /var/tmp/from_scwrl_1552447564.pdb > /var/tmp/scwrl_1552447564.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1552447564.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T02_AL5-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1993555042.pdb -s /var/tmp/to_scwrl_1993555042.seq -o /var/tmp/from_scwrl_1993555042.pdb > /var/tmp/scwrl_1993555042.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1993555042.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T99_AL1-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2086288799.pdb -s /var/tmp/to_scwrl_2086288799.seq -o /var/tmp/from_scwrl_2086288799.pdb > /var/tmp/scwrl_2086288799.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2086288799.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T99_AL2-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2021984487.pdb -s /var/tmp/to_scwrl_2021984487.seq -o /var/tmp/from_scwrl_2021984487.pdb > /var/tmp/scwrl_2021984487.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2021984487.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T99_AL3-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_141725303.pdb -s /var/tmp/to_scwrl_141725303.seq -o /var/tmp/from_scwrl_141725303.pdb > /var/tmp/scwrl_141725303.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_141725303.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T99_AL4-scwrl
# ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM-T99_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1702031038.pdb -s /var/tmp/to_scwrl_1702031038.seq -o /var/tmp/from_scwrl_1702031038.pdb > /var/tmp/scwrl_1702031038.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1702031038.pdb
# conformation set from SCWRL output
# naming current conformation SAM-T99_AL5-scwrl
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SAM_T06_server_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2005111797.pdb -s /var/tmp/to_scwrl_2005111797.seq -o /var/tmp/from_scwrl_2005111797.pdb > /var/tmp/scwrl_2005111797.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2005111797.pdb
# conformation set from SCWRL output
# naming current conformation SAM_T06_server_TS1-scwrl
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1217186886.pdb -s /var/tmp/to_scwrl_1217186886.seq -o /var/tmp/from_scwrl_1217186886.pdb > /var/tmp/scwrl_1217186886.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1217186886.pdb
# conformation set from SCWRL output
# naming current conformation SAM_T06_server_TS2-scwrl
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1960574266.pdb -s /var/tmp/to_scwrl_1960574266.seq -o /var/tmp/from_scwrl_1960574266.pdb > /var/tmp/scwrl_1960574266.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1960574266.pdb
# conformation set from SCWRL output
# naming current conformation SAM_T06_server_TS3-scwrl
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_101349531.pdb -s /var/tmp/to_scwrl_101349531.seq -o /var/tmp/from_scwrl_101349531.pdb > /var/tmp/scwrl_101349531.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_101349531.pdb
# conformation set from SCWRL output
# naming current conformation SAM_T06_server_TS4-scwrl
# ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation SAM_T06_server_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_321077613.pdb -s /var/tmp/to_scwrl_321077613.seq -o /var/tmp/from_scwrl_321077613.pdb > /var/tmp/scwrl_321077613.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_321077613.pdb
# conformation set from SCWRL output
# naming current conformation SAM_T06_server_TS5-scwrl
# ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP3_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1276813293.pdb -s /var/tmp/to_scwrl_1276813293.seq -o /var/tmp/from_scwrl_1276813293.pdb > /var/tmp/scwrl_1276813293.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1276813293.pdb
# conformation set from SCWRL output
# naming current conformation SP3_TS1-scwrl
# ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP3_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1651169054.pdb -s /var/tmp/to_scwrl_1651169054.seq -o /var/tmp/from_scwrl_1651169054.pdb > /var/tmp/scwrl_1651169054.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1651169054.pdb
# conformation set from SCWRL output
# naming current conformation SP3_TS2-scwrl
# ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP3_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1615381900.pdb -s /var/tmp/to_scwrl_1615381900.seq -o /var/tmp/from_scwrl_1615381900.pdb > /var/tmp/scwrl_1615381900.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1615381900.pdb
# conformation set from SCWRL output
# naming current conformation SP3_TS3-scwrl
# ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP3_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1917476511.pdb -s /var/tmp/to_scwrl_1917476511.seq -o /var/tmp/from_scwrl_1917476511.pdb > /var/tmp/scwrl_1917476511.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1917476511.pdb
# conformation set from SCWRL output
# naming current conformation SP3_TS4-scwrl
# ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1
# Found a chain break before 328
# copying to AlignedFragments data structure
# naming current conformation SP3_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_124618920.pdb -s /var/tmp/to_scwrl_124618920.seq -o /var/tmp/from_scwrl_124618920.pdb > /var/tmp/scwrl_124618920.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_124618920.pdb
# conformation set from SCWRL output
# naming current conformation SP3_TS5-scwrl
# ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP4_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1317050.pdb -s /var/tmp/to_scwrl_1317050.seq -o /var/tmp/from_scwrl_1317050.pdb > /var/tmp/scwrl_1317050.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1317050.pdb
# conformation set from SCWRL output
# naming current conformation SP4_TS1-scwrl
# ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SP4_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_451871958.pdb -s /var/tmp/to_scwrl_451871958.seq -o /var/tmp/from_scwrl_451871958.pdb > /var/tmp/scwrl_451871958.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_451871958.pdb
# conformation set from SCWRL output
# naming current conformation SP4_TS2-scwrl
# ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation SP4_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_73181015.pdb -s /var/tmp/to_scwrl_73181015.seq -o /var/tmp/from_scwrl_73181015.pdb > /var/tmp/scwrl_73181015.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_73181015.pdb
# conformation set from SCWRL output
# naming current conformation SP4_TS3-scwrl
# ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation SP4_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1488226308.pdb -s /var/tmp/to_scwrl_1488226308.seq -o /var/tmp/from_scwrl_1488226308.pdb > /var/tmp/scwrl_1488226308.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1488226308.pdb
# conformation set from SCWRL output
# naming current conformation SP4_TS4-scwrl
# ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1
# Found a chain break before 327
# copying to AlignedFragments data structure
# naming current conformation SP4_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1645795916.pdb -s /var/tmp/to_scwrl_1645795916.seq -o /var/tmp/from_scwrl_1645795916.pdb > /var/tmp/scwrl_1645795916.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1645795916.pdb
# conformation set from SCWRL output
# naming current conformation SP4_TS5-scwrl
# ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_116492833.pdb -s /var/tmp/to_scwrl_116492833.seq -o /var/tmp/from_scwrl_116492833.pdb > /var/tmp/scwrl_116492833.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_116492833.pdb
# conformation set from SCWRL output
# naming current conformation SPARKS2_TS1-scwrl
# ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1
# Found a chain break before 326
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1090974420.pdb -s /var/tmp/to_scwrl_1090974420.seq -o /var/tmp/from_scwrl_1090974420.pdb > /var/tmp/scwrl_1090974420.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1090974420.pdb
# conformation set from SCWRL output
# naming current conformation SPARKS2_TS2-scwrl
# ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_556445772.pdb -s /var/tmp/to_scwrl_556445772.seq -o /var/tmp/from_scwrl_556445772.pdb > /var/tmp/scwrl_556445772.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_556445772.pdb
# conformation set from SCWRL output
# naming current conformation SPARKS2_TS3-scwrl
# ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1
# Found a chain break before 334
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_635055024.pdb -s /var/tmp/to_scwrl_635055024.seq -o /var/tmp/from_scwrl_635055024.pdb > /var/tmp/scwrl_635055024.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_635055024.pdb
# conformation set from SCWRL output
# naming current conformation SPARKS2_TS4-scwrl
# ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1
# Found a chain break before 330
# copying to AlignedFragments data structure
# naming current conformation SPARKS2_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1884565085.pdb -s /var/tmp/to_scwrl_1884565085.seq -o /var/tmp/from_scwrl_1884565085.pdb > /var/tmp/scwrl_1884565085.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1884565085.pdb
# conformation set from SCWRL output
# naming current conformation SPARKS2_TS5-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_666924510.pdb -s /var/tmp/to_scwrl_666924510.seq -o /var/tmp/from_scwrl_666924510.pdb > /var/tmp/scwrl_666924510.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_666924510.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_bnmx_TS1-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1337071360.pdb -s /var/tmp/to_scwrl_1337071360.seq -o /var/tmp/from_scwrl_1337071360.pdb > /var/tmp/scwrl_1337071360.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1337071360.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_bnmx_TS2-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1083577510.pdb -s /var/tmp/to_scwrl_1083577510.seq -o /var/tmp/from_scwrl_1083577510.pdb > /var/tmp/scwrl_1083577510.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1083577510.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_bnmx_TS3-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2077686817.pdb -s /var/tmp/to_scwrl_2077686817.seq -o /var/tmp/from_scwrl_2077686817.pdb > /var/tmp/scwrl_2077686817.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2077686817.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_bnmx_TS4-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_bnmx_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1429281779.pdb -s /var/tmp/to_scwrl_1429281779.seq -o /var/tmp/from_scwrl_1429281779.pdb > /var/tmp/scwrl_1429281779.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1429281779.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_bnmx_TS5-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation UNI-EID_expm_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_488541429.pdb -s /var/tmp/to_scwrl_488541429.seq -o /var/tmp/from_scwrl_488541429.pdb > /var/tmp/scwrl_488541429.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_488541429.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_expm_TS1-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1923758212.pdb -s /var/tmp/to_scwrl_1923758212.seq -o /var/tmp/from_scwrl_1923758212.pdb > /var/tmp/scwrl_1923758212.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1923758212.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_sfst_AL1-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1368086931.pdb -s /var/tmp/to_scwrl_1368086931.seq -o /var/tmp/from_scwrl_1368086931.pdb > /var/tmp/scwrl_1368086931.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1368086931.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_sfst_AL2-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_363042269.pdb -s /var/tmp/to_scwrl_363042269.seq -o /var/tmp/from_scwrl_363042269.pdb > /var/tmp/scwrl_363042269.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_363042269.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_sfst_AL3-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2065483515.pdb -s /var/tmp/to_scwrl_2065483515.seq -o /var/tmp/from_scwrl_2065483515.pdb > /var/tmp/scwrl_2065483515.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2065483515.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_sfst_AL4-scwrl
# ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation UNI-EID_sfst_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_922634323.pdb -s /var/tmp/to_scwrl_922634323.seq -o /var/tmp/from_scwrl_922634323.pdb > /var/tmp/scwrl_922634323.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_922634323.pdb
# conformation set from SCWRL output
# naming current conformation UNI-EID_sfst_AL5-scwrl
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1
# Found a chain break before 319
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_220670419.pdb -s /var/tmp/to_scwrl_220670419.seq -o /var/tmp/from_scwrl_220670419.pdb > /var/tmp/scwrl_220670419.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_220670419.pdb
# conformation set from SCWRL output
# naming current conformation Zhang-Server_TS1-scwrl
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1135186755.pdb -s /var/tmp/to_scwrl_1135186755.seq -o /var/tmp/from_scwrl_1135186755.pdb > /var/tmp/scwrl_1135186755.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1135186755.pdb
# conformation set from SCWRL output
# naming current conformation Zhang-Server_TS2-scwrl
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_735724942.pdb -s /var/tmp/to_scwrl_735724942.seq -o /var/tmp/from_scwrl_735724942.pdb > /var/tmp/scwrl_735724942.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_735724942.pdb
# conformation set from SCWRL output
# naming current conformation Zhang-Server_TS3-scwrl
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1
# Found a chain break before 320
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_322019950.pdb -s /var/tmp/to_scwrl_322019950.seq -o /var/tmp/from_scwrl_322019950.pdb > /var/tmp/scwrl_322019950.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322019950.pdb
# conformation set from SCWRL output
# naming current conformation Zhang-Server_TS4-scwrl
# ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation Zhang-Server_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1456264368.pdb -s /var/tmp/to_scwrl_1456264368.seq -o /var/tmp/from_scwrl_1456264368.pdb > /var/tmp/scwrl_1456264368.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1456264368.pdb
# conformation set from SCWRL output
# naming current conformation Zhang-Server_TS5-scwrl
# ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation beautshot_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2012538236.pdb -s /var/tmp/to_scwrl_2012538236.seq -o /var/tmp/from_scwrl_2012538236.pdb > /var/tmp/scwrl_2012538236.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2012538236.pdb
# conformation set from SCWRL output
# naming current conformation beautshot_TS1-scwrl
# ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation beautshotbase_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1973189004.pdb -s /var/tmp/to_scwrl_1973189004.seq -o /var/tmp/from_scwrl_1973189004.pdb > /var/tmp/scwrl_1973189004.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1973189004.pdb
# conformation set from SCWRL output
# naming current conformation beautshotbase_TS1-scwrl
# ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_924162622.pdb -s /var/tmp/to_scwrl_924162622.seq -o /var/tmp/from_scwrl_924162622.pdb > /var/tmp/scwrl_924162622.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_924162622.pdb
# conformation set from SCWRL output
# naming current conformation forecast-s_AL1-scwrl
# ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1
Skipped atom 553, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz
Skipped atom 554, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz
Skipped atom 555, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz
Skipped atom 556, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL2.pdb.gz
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1782531100.pdb -s /var/tmp/to_scwrl_1782531100.seq -o /var/tmp/from_scwrl_1782531100.pdb > /var/tmp/scwrl_1782531100.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1782531100.pdb
# conformation set from SCWRL output
# naming current conformation forecast-s_AL2-scwrl
# ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2097807925.pdb -s /var/tmp/to_scwrl_2097807925.seq -o /var/tmp/from_scwrl_2097807925.pdb > /var/tmp/scwrl_2097807925.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2097807925.pdb
# conformation set from SCWRL output
# naming current conformation forecast-s_AL3-scwrl
# ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_925479672.pdb -s /var/tmp/to_scwrl_925479672.seq -o /var/tmp/from_scwrl_925479672.pdb > /var/tmp/scwrl_925479672.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_925479672.pdb
# conformation set from SCWRL output
# naming current conformation forecast-s_AL4-scwrl
# ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation forecast-s_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_86919411.pdb -s /var/tmp/to_scwrl_86919411.seq -o /var/tmp/from_scwrl_86919411.pdb > /var/tmp/scwrl_86919411.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_86919411.pdb
# conformation set from SCWRL output
# naming current conformation forecast-s_AL5-scwrl
# ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation gtg_AL1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_23505293.pdb -s /var/tmp/to_scwrl_23505293.seq -o /var/tmp/from_scwrl_23505293.pdb > /var/tmp/scwrl_23505293.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_23505293.pdb
# conformation set from SCWRL output
# naming current conformation gtg_AL1-scwrl
# ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation gtg_AL2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_266222333.pdb -s /var/tmp/to_scwrl_266222333.seq -o /var/tmp/from_scwrl_266222333.pdb > /var/tmp/scwrl_266222333.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_266222333.pdb
# conformation set from SCWRL output
# naming current conformation gtg_AL2-scwrl
# ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation gtg_AL3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1732715327.pdb -s /var/tmp/to_scwrl_1732715327.seq -o /var/tmp/from_scwrl_1732715327.pdb > /var/tmp/scwrl_1732715327.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1732715327.pdb
# conformation set from SCWRL output
# naming current conformation gtg_AL3-scwrl
# ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation gtg_AL4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_139998126.pdb -s /var/tmp/to_scwrl_139998126.seq -o /var/tmp/from_scwrl_139998126.pdb > /var/tmp/scwrl_139998126.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_139998126.pdb
# conformation set from SCWRL output
# naming current conformation gtg_AL4-scwrl
# ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1
Skipped atom 118, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 120, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 122, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 124, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 134, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 136, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 138, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 140, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation gtg_AL5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1357196753.pdb -s /var/tmp/to_scwrl_1357196753.seq -o /var/tmp/from_scwrl_1357196753.pdb > /var/tmp/scwrl_1357196753.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1357196753.pdb
# conformation set from SCWRL output
# naming current conformation gtg_AL5-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv.2_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_141677452.pdb -s /var/tmp/to_scwrl_141677452.seq -o /var/tmp/from_scwrl_141677452.pdb > /var/tmp/scwrl_141677452.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_141677452.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.2_TS1-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv.2_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_775053151.pdb -s /var/tmp/to_scwrl_775053151.seq -o /var/tmp/from_scwrl_775053151.pdb > /var/tmp/scwrl_775053151.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_775053151.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.2_TS2-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv.2_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1094278191.pdb -s /var/tmp/to_scwrl_1094278191.seq -o /var/tmp/from_scwrl_1094278191.pdb > /var/tmp/scwrl_1094278191.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1094278191.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.2_TS3-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv.2_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_808601962.pdb -s /var/tmp/to_scwrl_808601962.seq -o /var/tmp/from_scwrl_808601962.pdb > /var/tmp/scwrl_808601962.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_808601962.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.2_TS4-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv.2_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2112124511.pdb -s /var/tmp/to_scwrl_2112124511.seq -o /var/tmp/from_scwrl_2112124511.pdb > /var/tmp/scwrl_2112124511.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2112124511.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.2_TS5-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1
# Found a chain break before 333
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_30372056.pdb -s /var/tmp/to_scwrl_30372056.seq -o /var/tmp/from_scwrl_30372056.pdb > /var/tmp/scwrl_30372056.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30372056.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.4_TS2-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_738805132.pdb -s /var/tmp/to_scwrl_738805132.seq -o /var/tmp/from_scwrl_738805132.pdb > /var/tmp/scwrl_738805132.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_738805132.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.4_TS3-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1
WARNING: atoms too close: (T0298)L198.O and (T0298)A199.N only 0.000 apart, marking (T0298)A199.N as missing
WARNING: atoms too close: (T0298)L327.O and (T0298)G328.N only 0.000 apart, marking (T0298)G328.N as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1393922644.pdb -s /var/tmp/to_scwrl_1393922644.seq -o /var/tmp/from_scwrl_1393922644.pdb > /var/tmp/scwrl_1393922644.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1393922644.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.4_TS4-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1
WARNING: atoms too close: (T0298)H32.O and (T0298)R33.N only 0.000 apart, marking (T0298)R33.N as missing
WARNING: atoms too close: (T0298)D63.O and (T0298)F64.N only 0.000 apart, marking (T0298)F64.N as missing
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv.4_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_518913485.pdb -s /var/tmp/to_scwrl_518913485.seq -o /var/tmp/from_scwrl_518913485.pdb > /var/tmp/scwrl_518913485.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_518913485.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv.4_TS5-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_515079697.pdb -s /var/tmp/to_scwrl_515079697.seq -o /var/tmp/from_scwrl_515079697.pdb > /var/tmp/scwrl_515079697.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_515079697.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv_TS1-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_614525929.pdb -s /var/tmp/to_scwrl_614525929.seq -o /var/tmp/from_scwrl_614525929.pdb > /var/tmp/scwrl_614525929.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_614525929.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv_TS2-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_881955754.pdb -s /var/tmp/to_scwrl_881955754.seq -o /var/tmp/from_scwrl_881955754.pdb > /var/tmp/scwrl_881955754.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_881955754.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv_TS3-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation karypis.srv_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_433079566.pdb -s /var/tmp/to_scwrl_433079566.seq -o /var/tmp/from_scwrl_433079566.pdb > /var/tmp/scwrl_433079566.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_433079566.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv_TS4-scwrl
# ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# copying to AlignedFragments data structure
# naming current conformation karypis.srv_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1537160252.pdb -s /var/tmp/to_scwrl_1537160252.seq -o /var/tmp/from_scwrl_1537160252.pdb > /var/tmp/scwrl_1537160252.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1537160252.pdb
# conformation set from SCWRL output
# naming current conformation karypis.srv_TS5-scwrl
# ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1
# Found a chain break before 312
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1102626172.pdb -s /var/tmp/to_scwrl_1102626172.seq -o /var/tmp/from_scwrl_1102626172.pdb > /var/tmp/scwrl_1102626172.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1102626172.pdb
# conformation set from SCWRL output
# naming current conformation keasar-server_TS1-scwrl
# ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1
# Found a chain break before 247
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1568266321.pdb -s /var/tmp/to_scwrl_1568266321.seq -o /var/tmp/from_scwrl_1568266321.pdb > /var/tmp/scwrl_1568266321.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1568266321.pdb
# conformation set from SCWRL output
# naming current conformation keasar-server_TS2-scwrl
# ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1
# Found a chain break before 311
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_125401547.pdb -s /var/tmp/to_scwrl_125401547.seq -o /var/tmp/from_scwrl_125401547.pdb > /var/tmp/scwrl_125401547.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_125401547.pdb
# conformation set from SCWRL output
# naming current conformation keasar-server_TS3-scwrl
# ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1
# Found a chain break before 313
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1424646122.pdb -s /var/tmp/to_scwrl_1424646122.seq -o /var/tmp/from_scwrl_1424646122.pdb > /var/tmp/scwrl_1424646122.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1424646122.pdb
# conformation set from SCWRL output
# naming current conformation keasar-server_TS4-scwrl
# ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1
# Found a chain break before 312
# copying to AlignedFragments data structure
# naming current conformation keasar-server_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_877047043.pdb -s /var/tmp/to_scwrl_877047043.seq -o /var/tmp/from_scwrl_877047043.pdb > /var/tmp/scwrl_877047043.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_877047043.pdb
# conformation set from SCWRL output
# naming current conformation keasar-server_TS5-scwrl
# ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation mGen-3D_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_2137939783.pdb -s /var/tmp/to_scwrl_2137939783.seq -o /var/tmp/from_scwrl_2137939783.pdb > /var/tmp/scwrl_2137939783.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2137939783.pdb
# conformation set from SCWRL output
# naming current conformation mGen-3D_TS1-scwrl
# ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1250351479.pdb -s /var/tmp/to_scwrl_1250351479.seq -o /var/tmp/from_scwrl_1250351479.pdb > /var/tmp/scwrl_1250351479.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1250351479.pdb
# conformation set from SCWRL output
# naming current conformation nFOLD_TS1-scwrl
# ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS2
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1801209664.pdb -s /var/tmp/to_scwrl_1801209664.seq -o /var/tmp/from_scwrl_1801209664.pdb > /var/tmp/scwrl_1801209664.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1801209664.pdb
# conformation set from SCWRL output
# naming current conformation nFOLD_TS2-scwrl
# ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS3
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1772987236.pdb -s /var/tmp/to_scwrl_1772987236.seq -o /var/tmp/from_scwrl_1772987236.pdb > /var/tmp/scwrl_1772987236.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1772987236.pdb
# conformation set from SCWRL output
# naming current conformation nFOLD_TS3-scwrl
# ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS4
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1200675757.pdb -s /var/tmp/to_scwrl_1200675757.seq -o /var/tmp/from_scwrl_1200675757.pdb > /var/tmp/scwrl_1200675757.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1200675757.pdb
# conformation set from SCWRL output
# naming current conformation nFOLD_TS4-scwrl
# ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation nFOLD_TS5
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_579205689.pdb -s /var/tmp/to_scwrl_579205689.seq -o /var/tmp/from_scwrl_579205689.pdb > /var/tmp/scwrl_579205689.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_579205689.pdb
# conformation set from SCWRL output
# naming current conformation nFOLD_TS5-scwrl
# ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1
# WARNING: incomplete conformation T0298 can't currently be optimized by undertaker
# naming current conformation panther2_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1859906647.pdb -s /var/tmp/to_scwrl_1859906647.seq -o /var/tmp/from_scwrl_1859906647.pdb > /var/tmp/scwrl_1859906647.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1859906647.pdb
# conformation set from SCWRL output
# naming current conformation panther2_TS1-scwrl
# ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1
# Found a chain break before 335
# copying to AlignedFragments data structure
# naming current conformation shub_TS1
# request to SCWRL produces command: ulimit -t 303 ; scwrl -i /var/tmp/to_scwrl_1224181051.pdb -s /var/tmp/to_scwrl_1224181051.seq -o /var/tmp/from_scwrl_1224181051.pdb > /var/tmp/scwrl_1224181051.log
# Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1224181051.pdb
# conformation set from SCWRL output
# naming current conformation shub_TS1-scwrl
# command:CPU_time= 69.2945 sec, elapsed time= 469.097 sec)
# command:# Prefix for output files set to decoys/
# command:# Will now start reporting costs to decoys/evaluate_1.rdb
# command:# CostConform
Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input
Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot
# Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot
shub_TS1-scwrl	costs 0	real_cost = -70.4459
shub_TS1	costs 0	real_cost = -61.4636
panther2_TS1-scwrl	costs 0	real_cost = 108.071
panther2_TS1	costs 0	real_cost = 94.4574
nFOLD_TS5-scwrl	costs 0	real_cost = 120.144
nFOLD_TS5	costs 0	real_cost = 232.139
nFOLD_TS4-scwrl	costs 0	real_cost = 71.4228
nFOLD_TS4	costs 0	real_cost = 170.78
nFOLD_TS3-scwrl	costs 0	real_cost = 153.065
nFOLD_TS3	costs 0	real_cost = 265.929
nFOLD_TS2-scwrl	costs 0	real_cost = -51.5178
nFOLD_TS2	costs 0	real_cost = 84.5813
nFOLD_TS1-scwrl	costs 0	real_cost = 35.1841
nFOLD_TS1	costs 0	real_cost = 163.782
mGen-3D_TS1-scwrl	costs 0	real_cost = -17.3032
mGen-3D_TS1	costs 0	real_cost = 105.204
keasar-server_TS5-scwrl	costs 0	real_cost = -50.0328
keasar-server_TS5	costs 0	real_cost = -52.1363
keasar-server_TS4-scwrl	costs 0	real_cost = -85.5787
keasar-server_TS4	costs 0	real_cost = -81.1151
keasar-server_TS3-scwrl	costs 0	real_cost = -81.7482
keasar-server_TS3	costs 0	real_cost = -80.037
keasar-server_TS2-scwrl	costs 0	real_cost = -24.4548
keasar-server_TS2	costs 0	real_cost = -18.9112
keasar-server_TS1-scwrl	costs 0	real_cost = -87.5114
keasar-server_TS1	costs 0	real_cost = -67.4519
karypis.srv_TS5-scwrl	costs 0	real_cost = 160.14
karypis.srv_TS5	costs 0	real_cost = 158.208
karypis.srv_TS4-scwrl	costs 0	real_cost = 346.93
karypis.srv_TS4	costs 0	real_cost = 341.942
karypis.srv_TS3-scwrl	costs 0	real_cost = 222.824
karypis.srv_TS3	costs 0	real_cost = 222.951
karypis.srv_TS2-scwrl	costs 0	real_cost = 248.42
karypis.srv_TS2	costs 0	real_cost = 246.22
karypis.srv_TS1-scwrl	costs 0	real_cost = 162.796
karypis.srv_TS1	costs 0	real_cost = 162.548
karypis.srv.4_TS5-scwrl	costs 0	real_cost = 336.459
karypis.srv.4_TS5	costs 0	real_cost = 337.794
karypis.srv.4_TS4-scwrl	costs 0	real_cost = 318.304
karypis.srv.4_TS4	costs 0	real_cost = 318.935
karypis.srv.4_TS3-scwrl	costs 0	real_cost = 336.981
karypis.srv.4_TS3	costs 0	real_cost = 337
karypis.srv.4_TS2-scwrl	costs 0	real_cost = 302.16
karypis.srv.4_TS2	costs 0	real_cost = 302.165
karypis.srv.2_TS5-scwrl	costs 0	real_cost = 303.564
karypis.srv.2_TS5	costs 0	real_cost = 301.386
karypis.srv.2_TS4-scwrl	costs 0	real_cost = 168.432
karypis.srv.2_TS4	costs 0	real_cost = 167.835
karypis.srv.2_TS3-scwrl	costs 0	real_cost = 192.704
karypis.srv.2_TS3	costs 0	real_cost = 190.516
karypis.srv.2_TS2-scwrl	costs 0	real_cost = 223.008
karypis.srv.2_TS2	costs 0	real_cost = 218.28
karypis.srv.2_TS1-scwrl	costs 0	real_cost = 262.566
karypis.srv.2_TS1	costs 0	real_cost = 259.583
gtg_AL5-scwrl	costs 0	real_cost = 266.129
gtg_AL5	costs 0	real_cost = 385.825
gtg_AL4-scwrl	costs 0	real_cost = 268.375
gtg_AL4	costs 0	real_cost = 383.124
gtg_AL3-scwrl	costs 0	real_cost = 131.878
gtg_AL3	costs 0	real_cost = 252.484
gtg_AL2-scwrl	costs 0	real_cost = 139.966
gtg_AL2	costs 0	real_cost = 295.346
gtg_AL1-scwrl	costs 0	real_cost = 205.363
gtg_AL1	costs 0	real_cost = 324.339
forecast-s_AL5-scwrl	costs 0	real_cost = 461.154
forecast-s_AL5	costs 0	real_cost = 552.04
forecast-s_AL4-scwrl	costs 0	real_cost = 315.029
forecast-s_AL4	costs 0	real_cost = 469.816
forecast-s_AL3-scwrl	costs 0	real_cost = 426.493
forecast-s_AL3	costs 0	real_cost = 484.661
forecast-s_AL2-scwrl	costs 0	real_cost = 398.858
forecast-s_AL2	costs 0	real_cost = 489.499
forecast-s_AL1-scwrl	costs 0	real_cost = 276.118
forecast-s_AL1	costs 0	real_cost = 421.335
beautshotbase_TS1-scwrl	costs 0	real_cost = 84.2007
beautshotbase_TS1	costs 0	real_cost = 78.2892
beautshot_TS1-scwrl	costs 0	real_cost = -100.524
beautshot_TS1	costs 0	real_cost = -107.54
Zhang-Server_TS5-scwrl	costs 0	real_cost = -104.386
Zhang-Server_TS5	costs 0	real_cost = -109.086
Zhang-Server_TS4-scwrl	costs 0	real_cost = -34.8512
Zhang-Server_TS4	costs 0	real_cost = -37.9682
Zhang-Server_TS3-scwrl	costs 0	real_cost = -143.852
Zhang-Server_TS3	costs 0	real_cost = -143.387
Zhang-Server_TS2-scwrl	costs 0	real_cost = -144.177
Zhang-Server_TS2	costs 0	real_cost = -139.958
Zhang-Server_TS1-scwrl	costs 0	real_cost = -140.165
Zhang-Server_TS1	costs 0	real_cost = -136.102
UNI-EID_sfst_AL5-scwrl	costs 0	real_cost = 0.560676
UNI-EID_sfst_AL5	costs 0	real_cost = 170.218
UNI-EID_sfst_AL4-scwrl	costs 0	real_cost = -13.2439
UNI-EID_sfst_AL4	costs 0	real_cost = 161.431
UNI-EID_sfst_AL3-scwrl	costs 0	real_cost = -41.4084
UNI-EID_sfst_AL3	costs 0	real_cost = 141.155
UNI-EID_sfst_AL2-scwrl	costs 0	real_cost = -40.526
UNI-EID_sfst_AL2	costs 0	real_cost = 134.191
UNI-EID_sfst_AL1-scwrl	costs 0	real_cost = -96.638
UNI-EID_sfst_AL1	costs 0	real_cost = 97.3554
UNI-EID_expm_TS1-scwrl	costs 0	real_cost = -92.6994
UNI-EID_expm_TS1	costs 0	real_cost = 56.1933
UNI-EID_bnmx_TS5-scwrl	costs 0	real_cost = 45.8146
UNI-EID_bnmx_TS5	costs 0	real_cost = 220.594
UNI-EID_bnmx_TS4-scwrl	costs 0	real_cost = 9.9269
UNI-EID_bnmx_TS4	costs 0	real_cost = 185.147
UNI-EID_bnmx_TS3-scwrl	costs 0	real_cost = -47.2596
UNI-EID_bnmx_TS3	costs 0	real_cost = 140.426
UNI-EID_bnmx_TS2-scwrl	costs 0	real_cost = -40.526
UNI-EID_bnmx_TS2	costs 0	real_cost = 134.191
UNI-EID_bnmx_TS1-scwrl	costs 0	real_cost = -96.638
UNI-EID_bnmx_TS1	costs 0	real_cost = 97.3554
SPARKS2_TS5-scwrl	costs 0	real_cost = -49.2114
SPARKS2_TS5	costs 0	real_cost = -48.4873
SPARKS2_TS4-scwrl	costs 0	real_cost = -94.5218
SPARKS2_TS4	costs 0	real_cost = -89.1856
SPARKS2_TS3-scwrl	costs 0	real_cost = 9.03699
SPARKS2_TS3	costs 0	real_cost = 16.2031
SPARKS2_TS2-scwrl	costs 0	real_cost = -118.111
SPARKS2_TS2	costs 0	real_cost = -113.205
SPARKS2_TS1-scwrl	costs 0	real_cost = -105.412
SPARKS2_TS1	costs 0	real_cost = -112.143
SP4_TS5-scwrl	costs 0	real_cost = -37.8843
SP4_TS5	costs 0	real_cost = -40.5704
SP4_TS4-scwrl	costs 0	real_cost = -15.0335
SP4_TS4	costs 0	real_cost = -10.5478
SP4_TS3-scwrl	costs 0	real_cost = -83.0144
SP4_TS3	costs 0	real_cost = -85.1313
SP4_TS2-scwrl	costs 0	real_cost = -108.497
SP4_TS2	costs 0	real_cost = -112.544
SP4_TS1-scwrl	costs 0	real_cost = -115.556
SP4_TS1	costs 0	real_cost = -117.287
SP3_TS5-scwrl	costs 0	real_cost = -40.9653
SP3_TS5	costs 0	real_cost = -40.7294
SP3_TS4-scwrl	costs 0	real_cost = 5.39554
SP3_TS4	costs 0	real_cost = 5.78416
SP3_TS3-scwrl	costs 0	real_cost = -104.906
SP3_TS3	costs 0	real_cost = -102.175
SP3_TS2-scwrl	costs 0	real_cost = -106.224
SP3_TS2	costs 0	real_cost = -106.408
SP3_TS1-scwrl	costs 0	real_cost = -121.813
SP3_TS1	costs 0	real_cost = -121.918
SAM_T06_server_TS5-scwrl	costs 0	real_cost = 105.535
SAM_T06_server_TS5	costs 0	real_cost = 69.0285
SAM_T06_server_TS4-scwrl	costs 0	real_cost = 48.4973
SAM_T06_server_TS4	costs 0	real_cost = 4.12965
SAM_T06_server_TS3-scwrl	costs 0	real_cost = 50.7161
SAM_T06_server_TS3	costs 0	real_cost = -7.07585
SAM_T06_server_TS2-scwrl	costs 0	real_cost = -43.0913
SAM_T06_server_TS2	costs 0	real_cost = -57.144
SAM_T06_server_TS1-scwrl	costs 0	real_cost = -144.935
SAM_T06_server_TS1	costs 0	real_cost = -139.219
SAM-T99_AL5-scwrl	costs 0	real_cost = -8.61783
SAM-T99_AL5	costs 0	real_cost = 171.613
SAM-T99_AL4-scwrl	costs 0	real_cost = -4.17951
SAM-T99_AL4	costs 0	real_cost = 178.203
SAM-T99_AL3-scwrl	costs 0	real_cost = -5.12793
SAM-T99_AL3	costs 0	real_cost = 176.798
SAM-T99_AL2-scwrl	costs 0	real_cost = -26.7454
SAM-T99_AL2	costs 0	real_cost = 160.742
SAM-T99_AL1-scwrl	costs 0	real_cost = -41.8171
SAM-T99_AL1	costs 0	real_cost = 145.46
SAM-T02_AL5-scwrl	costs 0	real_cost = 53.1081
SAM-T02_AL5	costs 0	real_cost = 222.809
SAM-T02_AL4-scwrl	costs 0	real_cost = -66.2047
SAM-T02_AL4	costs 0	real_cost = 125.84
SAM-T02_AL3-scwrl	costs 0	real_cost = -25.6302
SAM-T02_AL3	costs 0	real_cost = 164.065
SAM-T02_AL2-scwrl	costs 0	real_cost = -42.5237
SAM-T02_AL2	costs 0	real_cost = 150.626
SAM-T02_AL1-scwrl	costs 0	real_cost = -0.772491
SAM-T02_AL1	costs 0	real_cost = 179.061
ROKKY_TS5-scwrl	costs 0	real_cost = -30.5005
ROKKY_TS5	costs 0	real_cost = -38.3959
ROKKY_TS4-scwrl	costs 0	real_cost = -65.6592
ROKKY_TS4	costs 0	real_cost = -61.9764
ROKKY_TS3-scwrl	costs 0	real_cost = -78.6625
ROKKY_TS3	costs 0	real_cost = -66.6376
ROKKY_TS2-scwrl	costs 0	real_cost = -72.7301
ROKKY_TS2	costs 0	real_cost = -76.2569
ROKKY_TS1-scwrl	costs 0	real_cost = -33.9417
ROKKY_TS1	costs 0	real_cost = -30.6358
ROBETTA_TS5-scwrl	costs 0	real_cost = -6.24538
ROBETTA_TS5	costs 0	real_cost = -9.95375
ROBETTA_TS4-scwrl	costs 0	real_cost = -14.8216
ROBETTA_TS4	costs 0	real_cost = -12.4793
ROBETTA_TS3-scwrl	costs 0	real_cost = -10.1449
ROBETTA_TS3	costs 0	real_cost = -6.9363
ROBETTA_TS2-scwrl	costs 0	real_cost = 4.14732
ROBETTA_TS2	costs 0	real_cost = 10.6101
ROBETTA_TS1-scwrl	costs 0	real_cost = -6.44612
ROBETTA_TS1	costs 0	real_cost = -2.91745
RAPTOR_TS5-scwrl	costs 0	real_cost = -45.084
RAPTOR_TS5	costs 0	real_cost = -45.2907
RAPTOR_TS4-scwrl	costs 0	real_cost = -83.3587
RAPTOR_TS4	costs 0	real_cost = -80.5993
RAPTOR_TS3-scwrl	costs 0	real_cost = -78.9847
RAPTOR_TS3	costs 0	real_cost = -86.1976
RAPTOR_TS2-scwrl	costs 0	real_cost = -106.255
RAPTOR_TS2	costs 0	real_cost = -98.6229
RAPTOR_TS1-scwrl	costs 0	real_cost = -120.577
RAPTOR_TS1	costs 0	real_cost = -125.31
RAPTORESS_TS5-scwrl	costs 0	real_cost = 151.913
RAPTORESS_TS5	costs 0	real_cost = 152.975
RAPTORESS_TS4-scwrl	costs 0	real_cost = 203.699
RAPTORESS_TS4	costs 0	real_cost = 210.573
RAPTORESS_TS3-scwrl	costs 0	real_cost = 82.7537
RAPTORESS_TS3	costs 0	real_cost = 90.7179
RAPTORESS_TS2-scwrl	costs 0	real_cost = 135.222
RAPTORESS_TS2	costs 0	real_cost = 138.508
RAPTORESS_TS1-scwrl	costs 0	real_cost = -106.206
RAPTORESS_TS1	costs 0	real_cost = -99.6636
RAPTOR-ACE_TS5-scwrl	costs 0	real_cost = -51.6611
RAPTOR-ACE_TS5	costs 0	real_cost = -50.4268
RAPTOR-ACE_TS4-scwrl	costs 0	real_cost = -115.471
RAPTOR-ACE_TS4	costs 0	real_cost = -108.71
RAPTOR-ACE_TS3-scwrl	costs 0	real_cost = -101.691
RAPTOR-ACE_TS3	costs 0	real_cost = -98.2629
RAPTOR-ACE_TS2-scwrl	costs 0	real_cost = -97.5107
RAPTOR-ACE_TS2	costs 0	real_cost = -103.574
RAPTOR-ACE_TS1-scwrl	costs 0	real_cost = -121.813
RAPTOR-ACE_TS1	costs 0	real_cost = -121.918
Pmodeller6_TS5-scwrl	costs 0	real_cost = -81.2206
Pmodeller6_TS5	costs 0	real_cost = -93.6162
Pmodeller6_TS4-scwrl	costs 0	real_cost = -73.3466
Pmodeller6_TS4	costs 0	real_cost = -78.5
Pmodeller6_TS3-scwrl	costs 0	real_cost = -82.6224
Pmodeller6_TS3	costs 0	real_cost = -88.853
Pmodeller6_TS2-scwrl	costs 0	real_cost = -73.6912
Pmodeller6_TS2	costs 0	real_cost = -84.4937
Pmodeller6_TS1-scwrl	costs 0	real_cost = -73.6912
Pmodeller6_TS1	costs 0	real_cost = -84.4937
Phyre-2_TS5-scwrl	costs 0	real_cost = -84.2964
Phyre-2_TS5	costs 0	real_cost = -80.8203
Phyre-2_TS4-scwrl	costs 0	real_cost = -46.986
Phyre-2_TS4	costs 0	real_cost = -46.6954
Phyre-2_TS3-scwrl	costs 0	real_cost = -43.6127
Phyre-2_TS3	costs 0	real_cost = -45.2341
Phyre-2_TS2-scwrl	costs 0	real_cost = 1.85827
Phyre-2_TS2	costs 0	real_cost = 1.31214
Phyre-2_TS1-scwrl	costs 0	real_cost = -84.3033
Phyre-2_TS1	costs 0	real_cost = -80.8482
Phyre-1_TS1-scwrl	costs 0	real_cost = -51.8524
Phyre-1_TS1	costs 0	real_cost = -58.4251
Pcons6_TS5-scwrl	costs 0	real_cost = -83.8826
Pcons6_TS5	costs 0	real_cost = -95.9927
Pcons6_TS4-scwrl	costs 0	real_cost = -84.2751
Pcons6_TS4	costs 0	real_cost = -93.9331
Pcons6_TS3-scwrl	costs 0	real_cost = -87.5397
Pcons6_TS3	costs 0	real_cost = -95.6023
Pcons6_TS2-scwrl	costs 0	real_cost = -93.7521
Pcons6_TS2	costs 0	real_cost = -99.6095
Pcons6_TS1-scwrl	costs 0	real_cost = -73.3466
Pcons6_TS1	costs 0	real_cost = -78.5
PROTINFO_TS5-scwrl	costs 0	real_cost = 8.1523
PROTINFO_TS5	costs 0	real_cost = 10.1618
PROTINFO_TS4-scwrl	costs 0	real_cost = -14.2634
PROTINFO_TS4	costs 0	real_cost = -5.81627
PROTINFO_TS3-scwrl	costs 0	real_cost = 3.05788
PROTINFO_TS3	costs 0	real_cost = 2.73255
PROTINFO_TS2-scwrl	costs 0	real_cost = -96.624
PROTINFO_TS2	costs 0	real_cost = -97.9114
PROTINFO_TS1-scwrl	costs 0	real_cost = -101.707
PROTINFO_TS1	costs 0	real_cost = -101.076
PROTINFO-AB_TS5-scwrl	costs 0	real_cost = 4.3219
PROTINFO-AB_TS5	costs 0	real_cost = 11.6375
PROTINFO-AB_TS4-scwrl	costs 0	real_cost = -65.4488
PROTINFO-AB_TS4	costs 0	real_cost = -65.4081
PROTINFO-AB_TS3-scwrl	costs 0	real_cost = -76.6564
PROTINFO-AB_TS3	costs 0	real_cost = -78.0155
PROTINFO-AB_TS2-scwrl	costs 0	real_cost = -14.2634
PROTINFO-AB_TS2	costs 0	real_cost = -5.81627
PROTINFO-AB_TS1-scwrl	costs 0	real_cost = -82.0627
PROTINFO-AB_TS1	costs 0	real_cost = -77.9518
NN_PUT_lab_TS1-scwrl	costs 0	real_cost = -24.6299
NN_PUT_lab_TS1	costs 0	real_cost = 157.147
MetaTasser_TS5-scwrl	costs 0	real_cost = 0.579908
MetaTasser_TS5	costs 0	real_cost = -0.424859
MetaTasser_TS4-scwrl	costs 0	real_cost = -27.8694
MetaTasser_TS4	costs 0	real_cost = -21.1697
MetaTasser_TS3-scwrl	costs 0	real_cost = -63.6742
MetaTasser_TS3	costs 0	real_cost = -65.2349
MetaTasser_TS2-scwrl	costs 0	real_cost = -0.574564
MetaTasser_TS2	costs 0	real_cost = -13.2256
MetaTasser_TS1-scwrl	costs 0	real_cost = -22.3692
MetaTasser_TS1	costs 0	real_cost = -21.2489
Ma-OPUS-server_TS5-scwrl	costs 0	real_cost = 148.046
Ma-OPUS-server_TS5	costs 0	real_cost = 143.839
Ma-OPUS-server_TS4-scwrl	costs 0	real_cost = 79.0876
Ma-OPUS-server_TS4	costs 0	real_cost = 83.5603
Ma-OPUS-server_TS3-scwrl	costs 0	real_cost = -104.211
Ma-OPUS-server_TS3	costs 0	real_cost = -102.281
Ma-OPUS-server_TS2-scwrl	costs 0	real_cost = -59.5285
Ma-OPUS-server_TS2	costs 0	real_cost = -63.7681
Ma-OPUS-server_TS1-scwrl	costs 0	real_cost = -91.7519
Ma-OPUS-server_TS1	costs 0	real_cost = -104.407
LOOPP_TS5-scwrl	costs 0	real_cost = 149.309
LOOPP_TS5	costs 0	real_cost = 139.907
LOOPP_TS4-scwrl	costs 0	real_cost = 171.637
LOOPP_TS4	costs 0	real_cost = 171.659
LOOPP_TS3-scwrl	costs 0	real_cost = -76.6641
LOOPP_TS3	costs 0	real_cost = -80.7256
LOOPP_TS2-scwrl	costs 0	real_cost = -12.6587
LOOPP_TS2	costs 0	real_cost = -13.8708
LOOPP_TS1-scwrl	costs 0	real_cost = -35.3166
LOOPP_TS1	costs 0	real_cost = -48.998
Huber-Torda-Server_TS5-scwrl	costs 0	real_cost = 678.845
Huber-Torda-Server_TS5	costs 0	real_cost = 710.915
Huber-Torda-Server_TS4-scwrl	costs 0	real_cost = 564.406
Huber-Torda-Server_TS4	costs 0	real_cost = 585.945
Huber-Torda-Server_TS3-scwrl	costs 0	real_cost = 444.888
Huber-Torda-Server_TS3	costs 0	real_cost = 517.37
Huber-Torda-Server_TS2-scwrl	costs 0	real_cost = 563.086
Huber-Torda-Server_TS2	costs 0	real_cost = 629.904
Huber-Torda-Server_TS1-scwrl	costs 0	real_cost = 635.814
Huber-Torda-Server_TS1	costs 0	real_cost = 657.667
HHpred3_TS1-scwrl	costs 0	real_cost = -146.213
HHpred3_TS1	costs 0	real_cost = -141.922
HHpred2_TS1-scwrl	costs 0	real_cost = -146.213
HHpred2_TS1	costs 0	real_cost = -141.922
HHpred1_TS1-scwrl	costs 0	real_cost = -108.118
HHpred1_TS1	costs 0	real_cost = -110.225
GeneSilicoMetaServer_TS5-scwrl	costs 0	real_cost = -108.382
GeneSilicoMetaServer_TS5	costs 0	real_cost = -105.079
GeneSilicoMetaServer_TS4-scwrl	costs 0	real_cost = -91.1009
GeneSilicoMetaServer_TS4	costs 0	real_cost = -84.5806
GeneSilicoMetaServer_TS3-scwrl	costs 0	real_cost = -74.0688
GeneSilicoMetaServer_TS3	costs 0	real_cost = -80.7192
GeneSilicoMetaServer_TS2-scwrl	costs 0	real_cost = -72.3571
GeneSilicoMetaServer_TS2	costs 0	real_cost = -80.0612
GeneSilicoMetaServer_TS1-scwrl	costs 0	real_cost = -99.7231
GeneSilicoMetaServer_TS1	costs 0	real_cost = -105.602
Frankenstein_TS5-scwrl	costs 0	real_cost = -75.8827
Frankenstein_TS5	costs 0	real_cost = -82.2394
FUNCTION_TS5-scwrl	costs 0	real_cost = 3.1524
FUNCTION_TS5	costs 0	real_cost = -4.89928
FUNCTION_TS4-scwrl	costs 0	real_cost = -125.723
FUNCTION_TS4	costs 0	real_cost = -123.594
FUNCTION_TS3-scwrl	costs 0	real_cost = -72.7797
FUNCTION_TS3	costs 0	real_cost = -59.7592
FUNCTION_TS2-scwrl	costs 0	real_cost = -94.6053
FUNCTION_TS2	costs 0	real_cost = -94.4735
FUNCTION_TS1-scwrl	costs 0	real_cost = -49.9318
FUNCTION_TS1	costs 0	real_cost = -56.6863
FUGUE_AL5-scwrl	costs 0	real_cost = 130.389
FUGUE_AL5	costs 0	real_cost = 293.894
FUGUE_AL4-scwrl	costs 0	real_cost = 340.9
FUGUE_AL4	costs 0	real_cost = 401.06
FUGUE_AL3-scwrl	costs 0	real_cost = 274.964
FUGUE_AL3	costs 0	real_cost = 381.046
FUGUE_AL2-scwrl	costs 0	real_cost = -27.4919
FUGUE_AL2	costs 0	real_cost = 146.629
FUGUE_AL1-scwrl	costs 0	real_cost = -87.512
FUGUE_AL1	costs 0	real_cost = 106.65
FUGMOD_TS5-scwrl	costs 0	real_cost = 33.5394
FUGMOD_TS5	costs 0	real_cost = 33.8738
FUGMOD_TS4-scwrl	costs 0	real_cost = 333.518
FUGMOD_TS4	costs 0	real_cost = 330.236
FUGMOD_TS3-scwrl	costs 0	real_cost = 249.374
FUGMOD_TS3	costs 0	real_cost = 281.799
FUGMOD_TS2-scwrl	costs 0	real_cost = -115.393
FUGMOD_TS2	costs 0	real_cost = -115.792
FUGMOD_TS1-scwrl	costs 0	real_cost = -71.0816
FUGMOD_TS1	costs 0	real_cost = -75.0221
FPSOLVER-SERVER_TS5-scwrl	costs 0	real_cost = 330.982
FPSOLVER-SERVER_TS5	costs 0	real_cost = 331.795
FPSOLVER-SERVER_TS4-scwrl	costs 0	real_cost = 327.607
FPSOLVER-SERVER_TS4	costs 0	real_cost = 328.947
FPSOLVER-SERVER_TS3-scwrl	costs 0	real_cost = 324.366
FPSOLVER-SERVER_TS3	costs 0	real_cost = 325.051
FPSOLVER-SERVER_TS2-scwrl	costs 0	real_cost = 337.315
FPSOLVER-SERVER_TS2	costs 0	real_cost = 338.508
FPSOLVER-SERVER_TS1-scwrl	costs 0	real_cost = 335.499
FPSOLVER-SERVER_TS1	costs 0	real_cost = 336.894
FORTE2_AL5-scwrl	costs 0	real_cost = 232.089
FORTE2_AL5	costs 0	real_cost = 385.377
FORTE2_AL4-scwrl	costs 0	real_cost = 173.524
FORTE2_AL4	costs 0	real_cost = 339.716
FORTE2_AL3-scwrl	costs 0	real_cost = 105.331
FORTE2_AL3	costs 0	real_cost = 269.919
FORTE2_AL2-scwrl	costs 0	real_cost = 182.753
FORTE2_AL2	costs 0	real_cost = 365.184
FORTE2_AL1-scwrl	costs 0	real_cost = -23.4811
FORTE2_AL1	costs 0	real_cost = 177.486
FORTE1_AL5-scwrl	costs 0	real_cost = 232.089
FORTE1_AL5	costs 0	real_cost = 385.377
FORTE1_AL4-scwrl	costs 0	real_cost = 173.524
FORTE1_AL4	costs 0	real_cost = 339.716
FORTE1_AL3-scwrl	costs 0	real_cost = 105.331
FORTE1_AL3	costs 0	real_cost = 269.919
FORTE1_AL2-scwrl	costs 0	real_cost = 182.753
FORTE1_AL2	costs 0	real_cost = 365.184
FORTE1_AL1-scwrl	costs 0	real_cost = -23.4811
FORTE1_AL1	costs 0	real_cost = 177.486
FOLDpro_TS5-scwrl	costs 0	real_cost = 138.626
FOLDpro_TS5	costs 0	real_cost = 145.128
FOLDpro_TS4-scwrl	costs 0	real_cost = 186.042
FOLDpro_TS4	costs 0	real_cost = 185.554
FOLDpro_TS3-scwrl	costs 0	real_cost = 123.127
FOLDpro_TS3	costs 0	real_cost = 125.078
FOLDpro_TS2-scwrl	costs 0	real_cost = 101.232
FOLDpro_TS2	costs 0	real_cost = 107.314
FOLDpro_TS1-scwrl	costs 0	real_cost = -97.8513
FOLDpro_TS1	costs 0	real_cost = -116.064
FAMS_TS5-scwrl	costs 0	real_cost = -99.4489
FAMS_TS5	costs 0	real_cost = -105.832
FAMS_TS4-scwrl	costs 0	real_cost = -97.035
FAMS_TS4	costs 0	real_cost = -103.157
FAMS_TS3-scwrl	costs 0	real_cost = -99.604
FAMS_TS3	costs 0	real_cost = -100.165
FAMS_TS2-scwrl	costs 0	real_cost = -109.015
FAMS_TS2	costs 0	real_cost = -108.518
FAMS_TS1-scwrl	costs 0	real_cost = -98.1674
FAMS_TS1	costs 0	real_cost = -103.083
FAMSD_TS5-scwrl	costs 0	real_cost = -120.128
FAMSD_TS5	costs 0	real_cost = -105.386
FAMSD_TS4-scwrl	costs 0	real_cost = -50.0584
FAMSD_TS4	costs 0	real_cost = -57.2242
FAMSD_TS3-scwrl	costs 0	real_cost = -111.992
FAMSD_TS3	costs 0	real_cost = -109.253
FAMSD_TS2-scwrl	costs 0	real_cost = -36.219
FAMSD_TS2	costs 0	real_cost = -36.1284
FAMSD_TS1-scwrl	costs 0	real_cost = -133.979
FAMSD_TS1	costs 0	real_cost = -128.298
Distill_TS5-scwrl	costs 0	real_cost = 583.498
Distill_TS4-scwrl	costs 0	real_cost = 578.068
Distill_TS3-scwrl	costs 0	real_cost = 518.723
Distill_TS2-scwrl	costs 0	real_cost = 517.385
Distill_TS1-scwrl	costs 0	real_cost = 512.155
CaspIta-FOX_TS5-scwrl	costs 0	real_cost = -43.3788
CaspIta-FOX_TS5	costs 0	real_cost = -48.0337
CaspIta-FOX_TS4-scwrl	costs 0	real_cost = 5.63183
CaspIta-FOX_TS4	costs 0	real_cost = 2.08065
CaspIta-FOX_TS3-scwrl	costs 0	real_cost = -34.0285
CaspIta-FOX_TS3	costs 0	real_cost = -38.2568
CaspIta-FOX_TS2-scwrl	costs 0	real_cost = -11.1527
CaspIta-FOX_TS2	costs 0	real_cost = -19.0285
CaspIta-FOX_TS1-scwrl	costs 0	real_cost = 70.1826
CaspIta-FOX_TS1	costs 0	real_cost = 57.8639
CPHmodels_TS1-scwrl	costs 0	real_cost = 423.664
CPHmodels_TS1	costs 0	real_cost = 424.009
CIRCLE_TS5-scwrl	costs 0	real_cost = -111.992
CIRCLE_TS5	costs 0	real_cost = -109.253
CIRCLE_TS4-scwrl	costs 0	real_cost = -99.604
CIRCLE_TS4	costs 0	real_cost = -100.165
CIRCLE_TS3-scwrl	costs 0	real_cost = -109.015
CIRCLE_TS3	costs 0	real_cost = -108.518
CIRCLE_TS2-scwrl	costs 0	real_cost = -97.035
CIRCLE_TS2	costs 0	real_cost = -103.157
CIRCLE_TS1-scwrl	costs 0	real_cost = -99.4489
CIRCLE_TS1	costs 0	real_cost = -105.832
Bilab-ENABLE_TS5-scwrl	costs 0	real_cost = -131.366
Bilab-ENABLE_TS5	costs 0	real_cost = -131.366
Bilab-ENABLE_TS4-scwrl	costs 0	real_cost = -109.013
Bilab-ENABLE_TS4	costs 0	real_cost = -109.066
Bilab-ENABLE_TS3-scwrl	costs 0	real_cost = -95.9051
Bilab-ENABLE_TS3	costs 0	real_cost = -96.3781
Bilab-ENABLE_TS2-scwrl	costs 0	real_cost = -54.9225
Bilab-ENABLE_TS2	costs 0	real_cost = -54.8939
Bilab-ENABLE_TS1-scwrl	costs 0	real_cost = -61.7359
Bilab-ENABLE_TS1	costs 0	real_cost = -62.7403
BayesHH_TS1-scwrl	costs 0	real_cost = -126.615
BayesHH_TS1	costs 0	real_cost = -124.932
ABIpro_TS5-scwrl	costs 0	real_cost = 210.857
ABIpro_TS5	costs 0	real_cost = 210.869
ABIpro_TS4-scwrl	costs 0	real_cost = 299.424
ABIpro_TS4	costs 0	real_cost = 299.424
ABIpro_TS3-scwrl	costs 0	real_cost = 277.001
ABIpro_TS3	costs 0	real_cost = 277.015
ABIpro_TS2-scwrl	costs 0	real_cost = 264.986
ABIpro_TS2	costs 0	real_cost = 264.477
ABIpro_TS1-scwrl	costs 0	real_cost = 243.042
ABIpro_TS1	costs 0	real_cost = 243.819
3Dpro_TS5-scwrl	costs 0	real_cost = 47.8716
3Dpro_TS5	costs 0	real_cost = 44.431
3Dpro_TS4-scwrl	costs 0	real_cost = 69.4752
3Dpro_TS4	costs 0	real_cost = 72.4378
3Dpro_TS3-scwrl	costs 0	real_cost = -15.5107
3Dpro_TS3	costs 0	real_cost = -14.4005
3Dpro_TS2-scwrl	costs 0	real_cost = 6.22667
3Dpro_TS2	costs 0	real_cost = 11.185
3Dpro_TS1-scwrl	costs 0	real_cost = -85.3991
3Dpro_TS1	costs 0	real_cost = -88.5891
3D-JIGSAW_TS5-scwrl	costs 0	real_cost = 80.4083
3D-JIGSAW_TS5	costs 0	real_cost = 64.8794
3D-JIGSAW_TS4-scwrl	costs 0	real_cost = 32.5659
3D-JIGSAW_TS4	costs 0	real_cost = 17.9481
3D-JIGSAW_TS3-scwrl	costs 0	real_cost = 76.2139
3D-JIGSAW_TS3	costs 0	real_cost = 62.8752
3D-JIGSAW_TS2-scwrl	costs 0	real_cost = 60.9138
3D-JIGSAW_TS2	costs 0	real_cost = 48.2354
3D-JIGSAW_TS1-scwrl	costs 0	real_cost = 71.0471
3D-JIGSAW_TS1	costs 0	real_cost = 58.8316
3D-JIGSAW_RECOM_TS5-scwrl	costs 0	real_cost = 53.6746
3D-JIGSAW_RECOM_TS5	costs 0	real_cost = 51.1774
3D-JIGSAW_RECOM_TS4-scwrl	costs 0	real_cost = 61.4942
3D-JIGSAW_RECOM_TS4	costs 0	real_cost = 58.9312
3D-JIGSAW_RECOM_TS3-scwrl	costs 0	real_cost = 121.676
3D-JIGSAW_RECOM_TS3	costs 0	real_cost = 91.458
3D-JIGSAW_RECOM_TS2-scwrl	costs 0	real_cost = 63.8458
3D-JIGSAW_RECOM_TS2	costs 0	real_cost = 42.3305
3D-JIGSAW_RECOM_TS1-scwrl	costs 0	real_cost = 59.6083
3D-JIGSAW_RECOM_TS1	costs 0	real_cost = 50.0937
3D-JIGSAW_POPULUS_TS5-scwrl	costs 0	real_cost = 51.435
3D-JIGSAW_POPULUS_TS5	costs 0	real_cost = 32.2392
3D-JIGSAW_POPULUS_TS4-scwrl	costs 0	real_cost = 74.6452
3D-JIGSAW_POPULUS_TS4	costs 0	real_cost = 55.6641
3D-JIGSAW_POPULUS_TS3-scwrl	costs 0	real_cost = 71.2815
3D-JIGSAW_POPULUS_TS3	costs 0	real_cost = 59.8635
3D-JIGSAW_POPULUS_TS2-scwrl	costs 0	real_cost = 74.8327
3D-JIGSAW_POPULUS_TS2	costs 0	real_cost = 57.2937
3D-JIGSAW_POPULUS_TS1-scwrl	costs 0	real_cost = 70.7692
3D-JIGSAW_POPULUS_TS1	costs 0	real_cost = 53.4934
dimer//dimer-try9-1t4bA	costs 0	real_cost = -142.94
dimer//dimer-try8-1t4bA	costs 0	real_cost = -134.433
dimer//dimer-try7-1t4bA	costs 0	real_cost = -131.376
dimer//try1-opt2.unpack	costs 0	real_cost = -129.242
dimer//try1-opt2.repack-nonPC	costs 0	real_cost = -127.608
dimer//try1-opt2	costs 0	real_cost = -129.242
dimer//try1-opt2.gromacs0	costs 0	real_cost = -116.783
dimer//try1-opt1	costs 0	real_cost = -129.054
dimer//try1-opt1-scwrl	costs 0	real_cost = -132.9
from-dimer-try1-opt2-A.pdb.gz	costs 0	real_cost = -129.242
T0298.try9-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -141.928
T0298.try9-opt2.pdb.gz	costs 0	real_cost = -143.171
T0298.try9-opt2.gromacs0.pdb.gz	costs 0	real_cost = -140.047
T0298.try9-opt1.pdb.gz	costs 0	real_cost = -141.275
T0298.try9-opt1-scwrl.pdb.gz	costs 0	real_cost = -139.975
T0298.try8-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -131.947
T0298.try8-opt2.pdb.gz	costs 0	real_cost = -134.582
T0298.try8-opt2.gromacs0.pdb.gz	costs 0	real_cost = -131.194
T0298.try8-opt1.pdb.gz	costs 0	real_cost = -143.595
T0298.try8-opt1-scwrl.pdb.gz	costs 0	real_cost = -146.464
T0298.try7-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -126.601
T0298.try7-opt2.pdb.gz	costs 0	real_cost = -131.101
T0298.try7-opt2.gromacs0.pdb.gz	costs 0	real_cost = -131.843
T0298.try7-opt1.pdb.gz	costs 0	real_cost = -129.114
T0298.try7-opt1-scwrl.pdb.gz	costs 0	real_cost = -131.387
T0298.try6-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -124.788
T0298.try6-opt2.pdb.gz	costs 0	real_cost = -130.084
T0298.try6-opt2.gromacs0.pdb.gz	costs 0	real_cost = -131.267
T0298.try6-opt1.pdb.gz	costs 0	real_cost = -129.035
T0298.try6-opt1-scwrl.pdb.gz	costs 0	real_cost = -129.195
T0298.try5-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -101.197
T0298.try5-opt2.pdb.gz	costs 0	real_cost = -100.815
T0298.try5-opt2.gromacs0.pdb.gz	costs 0	real_cost = -102.897
T0298.try5-opt1.pdb.gz	costs 0	real_cost = -94.1307
T0298.try5-opt1-scwrl.pdb.gz	costs 0	real_cost = -95.3372
T0298.try4-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -47.1731
T0298.try4-opt2.pdb.gz	costs 0	real_cost = -44.5869
T0298.try4-opt2.gromacs0.pdb.gz	costs 0	real_cost = -46.144
T0298.try4-opt1.pdb.gz	costs 0	real_cost = -43.5404
T0298.try4-opt1-scwrl.pdb.gz	costs 0	real_cost = -44.9018
T0298.try3-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -92.4949
T0298.try3-opt2.pdb.gz	costs 0	real_cost = -93.7576
T0298.try3-opt2.gromacs0.pdb.gz	costs 0	real_cost = -96.4721
T0298.try3-opt1.pdb.gz	costs 0	real_cost = -90.0239
T0298.try3-opt1-scwrl.pdb.gz	costs 0	real_cost = -93.3142
T0298.try2-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -125.956
T0298.try2-opt2.pdb.gz	costs 0	real_cost = -129.556
T0298.try2-opt2.gromacs0.pdb.gz	costs 0	real_cost = -129.474
T0298.try2-opt1.pdb.gz	costs 0	real_cost = -121.273
T0298.try2-opt1-scwrl.pdb.gz	costs 0	real_cost = -121.766
T0298.try1-opt2.repack-nonPC.pdb.gz	costs 0	real_cost = -131.965
T0298.try1-opt2.pdb.gz	costs 0	real_cost = -134.412
T0298.try1-opt2.gromacs0.pdb.gz	costs 0	real_cost = -141.823
T0298.try1-opt1.pdb.gz	costs 0	real_cost = -134.79
T0298.try1-opt1-scwrl.pdb.gz	costs 0	real_cost = -134.76
../model5.ts-submitted	costs 0	real_cost = -130.116
../model4.ts-submitted	costs 0	real_cost = -134.394
../model3.ts-submitted	costs 0	real_cost = -134.398
../model2.ts-submitted	costs 0	real_cost = -129.257
../model1.ts-submitted	costs 0	real_cost = -143.172
align5	costs 0	real_cost = 98.3528
align4	costs 0	real_cost = 72.5709
align3	costs 0	real_cost = -3.38898
align2	costs 0	real_cost = -9.16029
align1	costs 0	real_cost = -102.579
T0298.try1-opt2.pdb	costs 0	real_cost = -134.412
model5-scwrl	costs 0	real_cost = -131.008
model5.ts-submitted	costs 0	real_cost = -130.116
model4-scwrl	costs 0	real_cost = -135.761
model4.ts-submitted	costs 0	real_cost = -134.394
model3-scwrl	costs 0	real_cost = -135.687
model3.ts-submitted	costs 0	real_cost = -134.398
model2-scwrl	costs 0	real_cost = -134.455
model2.ts-submitted	costs 0	real_cost = -129.257
model1-scwrl	costs 0	real_cost = -142.621
model1.ts-submitted	costs 0	real_cost = -143.172
T0298_1.real.pdb	costs 0	real_cost = -605
# command:CPU_time= 583.256 sec, elapsed time= 983.352 sec)
# command:rm -f sort.tmp
/projects/compbio/bin/sorttbl real_cost < decoys/evaluate_1.rdb > sort.tmp
mv -f sort.tmp decoys/evaluate_1.rdb
mv -f decoys/evaluate_1.pretty decoys/evaluate_1.pretty.old
mv: cannot stat `decoys/evaluate_1.pretty': No such file or directory
make: [decoys/evaluate_1.pretty] Error 1 (ignored)
/projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_1.rdb > decoys/evaluate_1.pretty