(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0297 SP1450, Streptococcus pneumoniae TIGR4, 211 res
    • gi|14043830|gb|AAH07863.1|_8:213 Platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDa [Homo sapiens]
    • gi|12804315|gb|AAH03016.1| Platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDa [Homo sapiens]
    • gi|47115189|emb|CAG28554.1| PAFAH1B3 [Homo sapiens]
    • gi|4210502|gb|AAD11989.1| PA1G_HUMAN; PAF ACETYLHYDROLASE 29 KD SUBUNIT; PAF-AH 29 KD SUBUNIT; PAF-AH GAMMA SUBUNIT [Homo sapiens]
    • gi|4505587|ref|NP_002564.1| platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDa [Homo sapiens]
    • gi|3024344|sp|Q15102|PA1B3_HUMAN Platelet-activating factor acetylhydrolase IB gamma subunit (PAF acetylhydrolase 29 kDa subunit) (PAF-AH 29 kDa subunit) (PAF-AH gamma subunit) (PAFAH gamma subunit) [Taxonomy]
    • gi|1122219|dbj|BAA09706.1| platelet activating factor acetylhydrolase IB gamma-subunit [Homo sapiens]
    • gi|27807201|ref|NP_777090.1|_8:213 platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit (29kD) [Bos taurus]
    • gi|3024346|sp|Q29460|PA1B3_BOVIN Platelet-activating factor acetylhydrolase IB gamma subunit (PAF acetylhydrolase 29 kDa subunit) (PAF-AH 29 kDa subunit) (PAF-AH gamma subunit) (PAFAH gamma subunit) [Taxonomy]
    • gi|17943423|pdb|1FXW|A Chain A, Crystal Structure Of The Recombinant Alpha1ALPHA2 Catalytic Heterodimer Of Bovine Brain Platelet-Activating Factor Acetylhydrolase Ib. [Taxonomy]
    • gi|2624421|pdb|1WAB| Platelet-Activating Factor Acetylhydrolase [Taxonomy]
    • gi|556479|dbj|BAA06455.1| PAF acetylhydrolase 29 kDa subunit [Bos taurus]
    • gi|8569341|pdb|1ES9|A_8:213 Chain A, X-Ray Crystal Structure Of R22k Mutant Of The Mammalian Brain Platelet-Activating Factor Acetylhydrolases (Paf-Ah) [Taxonomy]
    • gi|5107530|pdb|1BWR|_8:213 Probing The Substrate Specificity Of The Intracellular Brain Platelet-Activating Factor Acetylhydrolase [Taxonomy]
    • gi|16758470|ref|NP_446106.1|_9:214 platelet-activating factor acetylhydrolase, isoform 1b, alpha1 subunit [Rattus norvegicus]
    • gi|2501857|gb|AAC27973.1| platelet-activating factor acetylhydrolase alpha 1 subunit [Rattus norvegicus]
    • gi|6093641|sp|O35263|PA1B3_RAT Platelet-activating factor acetylhydrolase IB gamma subunit (PAF acetylhydrolase 29 kDa subunit) (PAF-AH 29 kDa subunit) (PAF-AH gamma subunit) (PAFAH gamma subunit) (Platelet-activating factor acetylhydrolase alpha 1 subunit) (PAF-AH alpha 1) [Taxonomy]
    • gi|5107529|pdb|1BWQ|_8:213 Probing The Substrate Specificity Of The Intracellular Brain Platelet-Activating Factor Acetylhydrolase [Taxonomy]
    • gi|57036489|ref|XP_533656.1|_8:213 PREDICTED: similar to Platelet-activating factor acetylhydrolase IB gamma subunit (PAF acetylhydrolase 29 kDa subunit) (PAF-AH 29 kDa subunit) (PAF-AH gamma subunit) (PAFAH gamma subunit) isoform 1 [Canis familiaris]
    • gi|73947425|ref|XP_852686.1| PREDICTED: similar to Platelet-activating factor acetylhydrolase IB gamma subunit (PAF acetylhydrolase 29 kDa subunit) (PAF-AH 29 kDa subunit) (PAF-AH gamma subunit) (PAFAH gamma subunit) isoform 2 [Canis familiaris]
    • gi|5107528|pdb|1BWP|_8:213 Probing The Substrate Specificity Of The Intracellular Brain Platelet-Activating Factor Acetylhydrolase [Taxonomy]
    • gi|73955102|ref|XP_536562.2|_371:576 PREDICTED: similar to platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30kDa [Canis familiaris]
    • gi|11693154|ref|NP_071782.1|_9:214 platelet-activating factor acetylhydrolase alpha 2 subunit [Rattus norvegicus]
    • gi|40254624|ref|NP_032801.2| platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit [Mus musculus]
    • gi|74142460|dbj|BAE31983.1| unnamed protein product [Mus musculus]
    • gi|12805159|gb|AAH02037.1| Platelet-activating factor acetylhydrolase, isoform 1b, alpha2 subunit [Mus musculus]
    • gi|2501859|gb|AAC27974.1| platelet-activating factor acetylhydrolase alpha 2 subunit [Rattus norvegicus]
    • gi|51859418|gb|AAH81714.1| Platelet-activating factor acetylhydrolase alpha 2 subunit [Rattus norvegicus]
    • gi|6093640|sp|O35264|PA1B2_RAT Platelet-activating factor acetylhydrolase IB beta subunit (PAF acetylhydrolase 30 kDa subunit) (PAF-AH 30 kDa subunit) (PAF-AH beta subunit) (PAFAH beta subunit) (Platelet-activating factor acetylhydrolase alpha 2 subunit) (PAF-AH alpha 2) [Taxonomy]
    • gi|55637011|ref|XP_508773.1|_133:338 PREDICTED: similar to platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30kDa; Platelet-activating factor acetylhydrolase, isoform Ib, beta subunit; platelet-activating factor acetylhydrolase, isoform Ib, beta subunit (30kD) ... [Pan troglodytes]
    • gi|30186156|gb|AAH51609.1|_8:213 Platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit [Danio rerio]
    • gi|68382865|ref|XP_683731.1| PREDICTED: similar to Platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit isoform 1 [Danio rerio]
    • gi|41055008|ref|NP_957352.1| platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit [Danio rerio]
    • gi|3024348|sp|Q61206|PA1B2_MOUSE_9:214 Platelet-activating factor acetylhydrolase IB beta subunit (PAF acetylhydrolase 30 kDa subunit) (PAF-AH 30 kDa subunit) (PAF-AH beta subunit) (PAFAH beta subunit) [Taxonomy]
    • gi|1373363|gb|AAC52997.1| platelet-activating factor acetylhydrolase isoform Ib beta subunit [Mus musculus]
    • gi|68353736|ref|XP_707002.1|_91:286 PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68353734|ref|XP_683427.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68384552|ref|XP_694266.1|_105:300 PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|68357446|ref|XP_698223.1|_91:286 PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|68395038|ref|XP_708529.1|_91:286 PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68395036|ref|XP_686815.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68434103|ref|XP_706787.1|_91:286 PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68434100|ref|XP_682990.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68395290|ref|XP_691706.1| PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|68393055|ref|XP_706927.1| PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68393052|ref|XP_683256.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68382596|ref|XP_684738.1| PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|68374885|ref|XP_709219.1| PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68374882|ref|XP_689037.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68373189|ref|XP_693617.1| PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|68373187|ref|XP_708798.1| PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68373184|ref|XP_687597.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68359791|ref|XP_708079.1| PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68359789|ref|XP_685703.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68357096|ref|XP_708915.1| PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68357094|ref|XP_687833.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68356838|ref|XP_708455.1| PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68356836|ref|XP_686557.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68354630|ref|XP_708587.1|_91:286 PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68354628|ref|XP_686972.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68393945|ref|XP_697297.1|_91:286 PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|68393904|ref|XP_707627.1| PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68393902|ref|XP_684741.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68358352|ref|XP_706739.1|_89:284 PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68358350|ref|XP_682887.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68360812|ref|XP_695554.1|_96:301 PREDICTED: similar to platelet-activating factor acetylhydrolase alpha 2 subunit [Danio rerio]
    • gi|68371050|ref|XP_684820.1|_91:286 PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|68368162|ref|XP_684557.1|_91:286 PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|68365456|ref|XP_706653.1|_89:284 PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68365454|ref|XP_682701.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|58176976|pdb|1V2G|A_3:175 Chain A, The L109p Mutant Of E. Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIPASE L1 (TAP) IN COMPLEXED WITH OCTANOIC Acid [Taxonomy]
    • gi|33357165|pdb|1JRL|A Chain A, Crystal Structure Of E. Coli Lysophospholiase L1ACYL-Coa Thioesterase IPROTEASE I L109P MUTANT [Taxonomy]
    • gi|68436851|ref|XP_697653.1|_105:300 PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|68372872|ref|XP_708215.1|_91:286 PREDICTED: similar to putative nucleic acid binding protein isoform 3 [Danio rerio]
    • gi|68372866|ref|XP_686028.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68372869|ref|XP_708214.1|_52:247 PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|62738069|pdb|1U8U|A_3:175 Chain A, E. Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIASE L1 IN Complexed With Octanoic Acid [Taxonomy]
    • gi|33357066|pdb|1IVN|A Chain A, E.Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIASE L1 [Taxonomy]
    • gi|68354774|ref|XP_708068.1|_91:286 PREDICTED: similar to putative nucleic acid binding protein isoform 3 [Danio rerio]
    • gi|68354772|ref|XP_708067.1|_52:247 PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68354770|ref|XP_685694.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68401800|ref|XP_697634.1|_205:400 PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|33357074|pdb|1J00|A_3:175 Chain A, E. Coli Thioesterase IPROTEASE ILYSOPHOSPHOLIPASE L1 IN Complexed With Diethyl Phosphono Moiety [Taxonomy]
    • gi|68361624|ref|XP_707327.1|_91:286 PREDICTED: similar to putative nucleic acid binding protein isoform 2 [Danio rerio]
    • gi|68361622|ref|XP_684023.1| PREDICTED: similar to putative nucleic acid binding protein isoform 1 [Danio rerio]
    • gi|68364244|ref|XP_686272.1|_38:211 PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|68366298|ref|XP_695699.1|_91:268 PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|66361373|pdb|1Z8H|D_5:210 Chain D, Crystal Structure Of Putative Lipase From The G-D-S-L Family (17135349) From Nostoc Sp. Pcc 7120 At 2.02 A Resolution [Taxonomy]
    • gi|66361372|pdb|1Z8H|C Chain C, Crystal Structure Of Putative Lipase From The G-D-S-L Family (17135349) From Nostoc Sp. Pcc 7120 At 2.02 A Resolution [Taxonomy]
    • gi|66361371|pdb|1Z8H|B Chain B, Crystal Structure Of Putative Lipase From The G-D-S-L Family (17135349) From Nostoc Sp. Pcc 7120 At 2.02 A Resolution [Taxonomy]
    • gi|66361370|pdb|1Z8H|A Chain A, Crystal Structure Of Putative Lipase From The G-D-S-L Family (17135349) From Nostoc Sp. Pcc 7120 At 2.02 A Resolution [Taxonomy]
    • gi|47169451|pdb|1VJG|A_5:210 Chain A, Crystal Structure Of Putative Lipase From The G-D-S-L Family From Nostoc Sp. At 2.01 A Resolution [Taxonomy]
    • gi|8954046|gb|AAF82220.1|_25:343 Contains similarity to proline-rich protein APG homolog T27E13.4 gi|7488229 from Arabidopsis thaliana BAC T27E13 gb|AC002338. It contains a Lipase/Acylhydrolase with GDSL-like motif PF|00657 [Taxonomy]
    • gi|68178373|ref|ZP_00551497.1|_36:199 Lipolytic enzyme, G-D-S-L [Desulfuromonas acetoxidans DSM 684]
    • gi|67981561|gb|EAM70993.1| Lipolytic enzyme, G-D-S-L [Desulfuromonas acetoxidans DSM 684]
    • gi|28189677|dbj|BAC56453.1|_9:148 similar to platelet-activating factor acetylhydrolase, beta subunit [Bos taurus]
    • gi|76633135|ref|XP_884553.1|_115:345 PREDICTED: similar to Protein C20orf81 homolog isoform 3 [Bos taurus]
    • gi|76633143|ref|XP_872173.1|_115:349 PREDICTED: similar to Protein C20orf81 homolog isoform 2 [Bos taurus]
    • gi|50907961|ref|XP_465469.1|_37:330 putative family II extracellular lipase 3Oryza sativa (japonica cultivar-group)]
    • gi|47497846|dbj|BAD19975.1| putative family II extracellular lipase 3Oryza sativa (japonica cultivar-group)]
    • gi|46015246|pdb|1PP4|B_2:213 Chain B, The Crystal Structure Of Rhamnogalacturonan Acetylesterase In Space Group P3121 [Taxonomy]
    • gi|46015245|pdb|1PP4|A Chain A, The Crystal Structure Of Rhamnogalacturonan Acetylesterase In Space Group P3121 [Taxonomy]
    • gi|18158804|pdb|1K7C|A Chain A, Rhamnogalacturonan Acetylesterase With Seven N-Linked Carbohydrate Residues Distributed At Two N-Glycosylation Sites Refined At 1.12 A Resolution [Taxonomy]
    • gi|7766905|pdb|1DEX|A Chain A, Rhamnogalacturonan Acetylesterase From Aspergillus Aculeatus At 1.9 A Resolution [Taxonomy]
    • gi|7766904|pdb|1DEO|A Chain A, Rhamnogalacturonan Acetylesterase From Aspergillus Aculeatus At 1.55 A Resolution With So4 In The Active Site [Taxonomy]
    • gi|68439489|ref|XP_694244.1|_358:501 PREDICTED: similar to Retrovirus-related Pol polyprotein from transposon 412 [Danio rerio]
    • gi|76633139|ref|XP_884613.1|_115:291 PREDICTED: similar to Protein C20orf81 homolog isoform 5 [Bos taurus]
    • gi|76633141|ref|XP_884643.1|_115:298 PREDICTED: similar to Protein C20orf81 homolog isoform 6 [Bos taurus]
    • gi|128091|sp|P13266|NEUA_ECOLI_251:419 N-acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) [Taxonomy]
    • gi|146944|gb|AAA24210.1| CMP-N-acetylneuraminic acid synthetase [Taxonomy]
    • gi|8778985|gb|AAF79900.1|_586:830 Contains a strong similarity to Anther-specific proline-rich protein APG precursor from Arabidopsis thaliana gi|728867 and contains a Lipase/Acylhydrolase domain with GDSL-like motif PF|00657. ESTs gb|AV531882, gb|AV533240, gb|AV534374, gb|AV533394, gb|AV532582, gb|AV533541 come from this gene [Taxonomy]
    • gi|25511649|pir||A86335 T20H2.9 protein - Arabidopsis thaliana [Taxonomy]
    • gi|68390521|ref|XP_697624.1|_81:208 PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|8778985|gb|AAF79900.1|_839:1133 Contains a strong similarity to Anther-specific proline-rich protein APG precursor from Arabidopsis thaliana gi|728867 and contains a Lipase/Acylhydrolase domain with GDSL-like motif PF|00657. ESTs gb|AV531882, gb|AV533240, gb|AV534374, gb|AV533394, gb|AV532582, gb|AV533541 come from this gene [Taxonomy]
    • gi|25511649|pir||A86335 T20H2.9 protein - Arabidopsis thaliana [Taxonomy]
    • gi|68433883|ref|XP_700917.1|_91:207 PREDICTED: similar to putative nucleic acid binding protein [Danio rerio]
    • gi|4587544|gb|AAD25775.1|_25:360 Belongs to the PF|00657 Lipase/Acylhydrolase with GDSL-motif family. ESTs gb|T75865, gb|R30449, gb|AI239373, gb|F19931 and gb|F19930 come from this gene. [Arabidopsis thaliana]