# List of top-scoring protein chains for T0296.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pcxA 810 2.60e+00 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1m2vB 926 2.79e+00 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78497,78498,78499,78500,78501 1oxsC 353 3.36e+00 b.40.6.3,c.37.1.12 87519,87520 1s14A 194 3.45e+00 d.122.1.2 98329 1oxxK 353 3.88e+00 b.40.6.3,c.37.1.12 93715,93716 1bxkA 355 1.15e+01 1bxkA c.2.1.2 29803 2c07A 285 1.22e+01 1jrbA 311 1.63e+01 c.1.4.1 90904 1cec 343 1.69e+01 1ceo c.1.8.3 28809 1wa9A 368 1.72e+01 1gz4A 551 2.01e+01 c.2.1.7,c.58.1.3 70794,70795 1pj3A 564 2.03e+01 c.2.1.7,c.58.1.3 94726,94727 1ceo 343 2.04e+01 1ceo c.1.8.3 28808 1qr6A 584 2.05e+01 1qr6A c.2.1.7,c.58.1.3 30293,33941 2fmpA 335 2.23e+01 1gz3A 554 2.25e+01 c.2.1.7,c.58.1.3 83393,83394 1ljlA 131 2.64e+01 c.44.1.1 73939 1jf8A 131 2.66e+01 c.44.1.1 66621 1ljuA 131 2.67e+01 c.44.1.1 73944 1lk0A 131 2.91e+01 c.44.1.1 73948 1x8lA 351 2.93e+01 1j0aA 325 3.04e+01 c.79.1.1 83871 1d2tA 231 3.19e+01 1d2tA a.111.1.1 19052 1iw8A 231 3.28e+01 a.111.1.1 76866 1i8tA 367 3.34e+01 c.4.1.3,d.16.1.7 66094,66095 1rxiA 131 3.34e+01 c.44.1.1 105116 1xtoA 311 4.04e+01 1s16A 390 4.04e+01 d.14.1.3,d.122.1.2 98331,98332 1vdkA 466 4.08e+01 a.127.1.1 100561 2f51A 118 4.09e+01 1uqrA 154 4.15e+01 c.23.13.1 99779 2cfxA 144 4.17e+01 1hc1 657 4.22e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18494,18505,21870 2ey4A 333 4.27e+01 1jubA 311 4.32e+01 c.1.4.1 90908 1gpmA 525 4.40e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1jrcA 311 4.44e+01 c.1.4.1 90906 1jueA 311 4.55e+01 c.1.4.1 90910 1jqvA 311 4.65e+01 c.1.4.1 90900 1fmjA 351 4.86e+01 c.37.1.5 59879 2f6uA 234 4.96e+01 1glqA 209 5.03e+01 1pgtA a.45.1.1,c.47.1.5 17588,32882 1ps9A 671 5.12e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1j7xA 302 5.24e+01 c.14.1.2 66425 1js8A 394 5.28e+01 a.86.1.1,b.112.1.1 67219,67220 2cnd 270 5.53e+01 1ndh b.43.4.2,c.25.1.1 25659,31549 1jqxA 311 5.67e+01 c.1.4.1 90902 2fkcA 247 5.84e+01 1oj6A 151 5.88e+01 a.1.1.2 93088 1cne 270 6.57e+01 1ndh b.43.4.2,c.25.1.1 25661,31551 1oxjA 173 6.59e+01 a.60.1.2,a.118.1.13 87517,87518 1ojuA 294 6.59e+01 c.2.1.5,d.162.1.1 103990,103991 1s1mA 545 6.73e+01 c.23.16.1,c.37.1.10 105201,105202 1tozA 116 6.91e+01 1l4uA 176 7.01e+01 c.37.1.2 73568 1gtvA 214 7.04e+01 c.37.1.1 70537 2g2jA 179 7.05e+01 1hzmA 154 7.05e+01 c.46.1.1 65975 1r6tA 477 7.10e+01 a.16.1.3,c.26.1.1 97160,97161 1r6uA 437 7.15e+01 c.26.1.1 97163 1djqA 729 7.29e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1o94A 729 7.31e+01 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1rwiA 270 7.39e+01 b.68.9.1 97987 1kmmA 424 7.73e+01 1adjA c.51.1.1,d.104.1.1 33174,40723 12e8H 221 7.79e+01 1igtB b.1.1.1,b.1.1.2 20269,21269 2btqB 426 8.08e+01 1bpe 335 8.16e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 18076,75815,75816 1httA 423 8.21e+01 1adjA c.51.1.1,d.104.1.1 33178,40727 1iayA 428 8.37e+01 1b8gA c.67.1.4 62130 1kk3A 410 8.63e+01 b.43.3.1,b.44.1.1,c.37.1.8 72640,72641,72642 1huzA 335 8.69e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 61281,75850,75851 1mdwA 328 8.69e+01 d.3.1.3 84934 2fctA 313 8.89e+01