# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i60A 278 1.36e+00 c.1.15.4 71118 1to3A 304 2.10e+00 c.1.10.1 107161 1u9yA 284 2.21e+00 1agnA 373 3.14e+00 2ohxA b.35.1.2,c.2.1.1 24737,29753 1o9rA 162 5.59e+00 a.25.1.1 86706 1fsu 492 7.93e+00 1auk c.76.1.2 35032 1xrsA 516 8.63e+00 1eguA 731 9.12e+00 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2aop 497 9.35e+00 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39503,39504,41427,41428 1jvnA 555 9.90e+00 c.1.2.1,c.23.16.1 67355,67356 1lxkA 721 1.10e+01 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 2fqxA 318 1.16e+01 1a59 378 1.16e+01 1aj8A a.103.1.1 18902 2bijA 305 1.27e+01 1n7oA 721 1.28e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1zuwA 272 1.29e+01 1b73A 254 1.30e+01 1b74A c.78.2.1,c.78.2.1 35266,35267 1erzA 303 1.47e+01 1erzA d.160.1.2 59498 1o6zA 303 1.49e+01 c.2.1.5,d.162.1.1 81107,81108 1qi9A 556 1.54e+01 1qhbA a.111.1.2 19053 1up8A 598 1.55e+01 a.111.1.2 99710 1c96A 753 1.65e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1a8s 273 1.66e+01 1brt c.69.1.12 34710 1b74A 254 1.69e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1ox6A 555 1.78e+01 c.1.2.1,c.23.16.1 87505,87506 1ufoA 238 1.83e+01 c.69.1.27 99344 1fmjA 351 1.94e+01 c.37.1.5 59879 8acn 754 2.03e+01 1amj c.8.2.1,c.83.1.1 30724,35400 1uz5A 402 2.03e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1nt4A 391 2.04e+01 c.60.1.2 92102 1n62C 288 2.06e+01 d.87.2.1,d.145.1.3 80094,80095 1uf5A 303 2.08e+01 d.160.1.2 107808 1zxiC 288 2.10e+01 1ykjA 394 2.18e+01 1eblA 317 2.27e+01 1hn9A c.95.1.2,c.95.1.2 35973,35974 2bvlA 543 2.35e+01 1pbe 394 2.35e+01 1pbe c.3.1.2,d.16.1.2 30338,37869 1amj 754 2.48e+01 1amj c.8.2.1,c.83.1.1 30725,35401 1bu6O 501 2.53e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 1aop 497 2.70e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1uhvA 500 2.70e+01 b.71.1.2,c.1.8.3 99402,99403 1hyeA 313 2.71e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1hnjA 317 2.74e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1zhvA 134 2.82e+01 1ffkL 115 2.84e+01 1ffkL c.12.1.1 30881 1ps9A 671 2.86e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 7acn 754 2.87e+01 1amj c.8.2.1,c.83.1.1 30717,35393 1ywfA 296 2.87e+01 2g0wA 296 2.91e+01 1xfiA 367 2.93e+01 e.50.1.1 109584 1bgj 394 2.97e+01 1pbe c.3.1.2,d.16.1.2 30352,37883 1gy8A 397 2.97e+01 c.2.1.2 83376 1b0jA 754 3.00e+01 1amj c.8.2.1,c.83.1.1 30719,35395 2phh 394 3.03e+01 1pbe c.3.1.2,d.16.1.2 30353,37884 1qj2C 285 3.04e+01 1qj2C 1hn9A 317 3.05e+01 1hn9A c.95.1.2,c.95.1.2 35977,35978 1zxiF 288 3.11e+01 2fnaA 357 3.11e+01 1po0A 751 3.11e+01 f.4.3.3 94960 1va4A 279 3.12e+01 c.69.1.12 108458 1skyB 502 3.12e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18313,26478,32358 1ispA 181 3.13e+01 c.69.1.18 76778 1pvgA 418 3.39e+01 d.14.1.3,d.122.1.2 95161,95162 1s72O 116 3.55e+01 c.12.1.1 105334 1u0mA 382 3.63e+01 c.95.1.2,c.95.1.2 107557,107558 1k0iA 394 3.67e+01 c.3.1.2,d.16.1.2 67942,67943 2bv5A 282 3.69e+01 2ajrA 331 3.76e+01 2a0b 125 3.79e+01 2a0b a.24.10.1 16630 5bcaA 516 3.92e+01 1b9zA b.3.1.1,c.1.8.1 22529,28799 1kmoA 774 3.95e+01 f.4.3.3 72753 1hjxA 362 4.03e+01 c.1.8.5,d.26.3.1 83512,83513 1eh9A 558 4.05e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21858,27785,28772 1eblB 317 4.19e+01 1hn9A c.95.1.2,c.95.1.2 35975,35976 2chnA 716 4.23e+01 1w0mA 226 4.29e+01 c.1.1.1 109027 1oxsC 353 4.36e+01 b.40.6.3,c.37.1.12 87519,87520 2bg5A 324 4.41e+01 1f89A 291 4.48e+01 d.160.1.1 64988 1w8kA 447 4.48e+01 1itkA 731 4.53e+01 a.93.1.3,a.93.1.3 71417,71418 1ur4A 399 4.53e+01 1cj3A 392 4.53e+01 1pbe c.3.1.2,d.16.1.2 30347,37878 1i6wA 181 4.64e+01 1i6wA c.69.1.18 61859 2cbiA 594 4.67e+01 1dabA 539 4.72e+01 1dabA b.80.1.7 28049 1dpsA 167 4.77e+01 1dpsA a.25.1.1 16716 2ohxA 374 4.88e+01 2ohxA b.35.1.2,c.2.1.1 24669,29685 1j0aA 325 4.89e+01 c.79.1.1 83871 1dpsD 167 4.92e+01 1dpsA a.25.1.1 16719 1ehaA 558 4.93e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21859,27786,28773 1glcG 501 5.10e+01 1glcG c.55.1.4,c.55.1.4 33519,33520 1wy5A 317 5.11e+01 1nc5A 373 5.13e+01 a.102.1.6 85548 1oxxK 353 5.13e+01 b.40.6.3,c.37.1.12 93715,93716 1xp3A 307 5.20e+01 1jj2N 115 5.21e+01 1ffkL c.12.1.1 63099 1t3qC 288 5.23e+01 d.87.2.1,d.145.1.3 106371,106372 1vqoO 116 5.24e+01 1sz7A 200 5.25e+01 1rwhA 757 5.27e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1hfeL 421 5.29e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1qumA 285 5.32e+01 1qumA c.1.15.1 29393 6acn 754 5.32e+01 1amj c.8.2.1,c.83.1.1 30721,35397 2fji1 399 5.41e+01 1j7xA 302 5.42e+01 c.14.1.2 66425 1h6kA 757 5.43e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1axgA 374 5.44e+01 2ohxA b.35.1.2,c.2.1.1 24691,29707 1ybdA 239 5.49e+01 1pa7A 130 5.49e+01 a.40.1.1 94410 1vl2A 421 5.54e+01 c.26.2.1,d.210.1.1 108708,108709 1yqtA 538 5.57e+01 1cec 343 5.57e+01 1ceo c.1.8.3 28809 1nbaA 264 5.65e+01 1nbaA c.33.1.3 31753 1p0kA 349 5.67e+01 c.1.4.1 87648 1brlA 355 5.76e+01 1lucA c.1.16.1 29553 1zy9A 564 5.78e+01 8adh 374 5.84e+01 2ohxA b.35.1.2,c.2.1.1 24690,29706 1a71A 374 6.05e+01 2ohxA b.35.1.2,c.2.1.1 24673,29689 1aomA 567 6.07e+01 1qksA b.70.2.1 27694 1zzmA 259 6.09e+01 1glaG 501 6.10e+01 1glcG c.55.1.4,c.55.1.4 33507,33508 1ceo 343 6.11e+01 1ceo c.1.8.3 28808 1ejjA 511 6.23e+01 1ejjA c.105.1.1,c.76.1.3 59422,59423 1bxkA 355 6.25e+01 1bxkA c.2.1.2 29803 1lucA 355 6.28e+01 1lucA c.1.16.1 29547 1n8kA 374 6.32e+01 b.35.1.2,c.2.1.1 80298,80299 1yarA 233 6.36e+01 1wc9A 169 6.38e+01 1fehA 574 6.39e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1b9zA 516 6.47e+01 1b9zA b.3.1.1,c.1.8.1 22528,28798 1kv7A 488 6.56e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 6pfkA 319 6.61e+01 3pfk c.89.1.1 35583 1hetA 374 6.69e+01 2ohxA b.35.1.2,c.2.1.1 60975,60976 1kkoA 413 6.88e+01 c.1.11.2,d.54.1.1 68675,68676 1axeA 374 6.90e+01 2ohxA b.35.1.2,c.2.1.1 24681,29697 1qksA 567 7.16e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1heuA 374 7.23e+01 2ohxA b.35.1.2,c.2.1.1 60979,60980 1pg4A 652 7.41e+01 e.23.1.1 88067 1uqrA 154 7.48e+01 c.23.13.1 99779 1y7tA 327 7.51e+01 1d9eA 284 7.60e+01 1d9eA c.1.10.4 29195 1u3wA 374 7.62e+01 1v1rB 342 7.65e+01 c.36.1.7,c.48.1.2 108273,108274 1zowA 313 7.65e+01 1ra6A 461 7.65e+01 e.8.1.4 104879 1xyzA 347 7.70e+01 1taxA c.1.8.3 28804 1knqA 175 7.79e+01 c.37.1.17 72786 1z41A 338 8.01e+01 1o5kA 306 8.03e+01 c.1.10.1 92504 1lnh 857 8.04e+01 1yge a.119.1.1,b.12.1.1 19237,23637 1l8bA 190 8.11e+01 d.86.1.1 73683 2g8lA 299 8.16e+01 1hg3A 225 8.32e+01 1hg3A c.1.1.1 61025 1rovA 857 8.68e+01 a.119.1.1,b.12.1.1 97674,97675 1bmdA 327 8.77e+01 1bmdA c.2.1.5,d.162.1.1 30139,42106 1aoqA 567 8.79e+01 1qksA a.3.1.2,b.70.2.1 15934,27692 1t9kA 347 8.80e+01 c.124.1.5 106721 1dtdA 303 8.84e+01 1aye c.56.5.1 33823 1ejhA 190 8.89e+01 1ejhA d.86.1.1 40147 1owqA 361 8.92e+01 c.1.8.5,d.26.3.1 104041,104042 1ee2A 373 8.94e+01 2ohxA b.35.1.2,c.2.1.1 24663,29679 1e08A 371 8.95e+01 i.4.1.1 45914 1c3qA 272 9.00e+01 1c3qA c.72.1.2 34948