# List of top-scoring protein chains for T0296.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kyzA 365 8.40e-01 a.4.5.29,c.66.1.12 73312,73313 1bxkA 355 2.60e+00 1bxkA c.2.1.2 29803 1x8lA 351 7.49e+00 1uqrA 154 9.97e+00 c.23.13.1 99779 1fmjA 351 1.09e+01 c.37.1.5 59879 2c0jA 161 1.25e+01 1wc8A 180 1.41e+01 1wc9A 165 1.44e+01 1vpgA 192 1.45e+01 1hcuA 503 1.46e+01 a.102.2.1 65796 1sjqA 105 1.62e+01 d.58.7.1 105660 2ad9A 119 1.65e+01 1sz7A 200 1.76e+01 1j0aA 325 1.80e+01 c.79.1.1 83871 2cnd 270 2.13e+01 1ndh b.43.4.2,c.25.1.1 25659,31549 1oj6A 151 2.14e+01 a.1.1.2 93088 2c07A 285 2.19e+01 2f6uA 234 2.35e+01 1ydnA 295 2.49e+01 1xoiA 846 2.51e+01 1tozA 116 2.51e+01 1oxsC 353 2.53e+01 b.40.6.3,c.37.1.12 87519,87520 1cne 270 2.60e+01 1ndh b.43.4.2,c.25.1.1 25661,31551 1fc0A 846 2.64e+01 1a8i c.87.1.4 35473 1l5sA 847 2.64e+01 c.87.1.4 77716 1xtaA 221 2.69e+01 2c2aA 258 2.72e+01 1khtA 192 2.83e+01 c.37.1.1 84401 1oxxK 353 2.85e+01 b.40.6.3,c.37.1.12 93715,93716 1ti6A 875 2.88e+01 b.52.2.2,c.81.1.1 106974,106975 2boqA 331 2.91e+01 1gefA 123 2.95e+01 1gefA c.52.1.18 60465 1q1fA 151 2.98e+01 a.1.1.2 104476 1z8dA 842 3.13e+01 1zkdA 387 3.14e+01 1fuoA 467 3.21e+01 1furA a.127.1.1 19411 1fuqA 472 3.22e+01 1furA a.127.1.1 19405 1eh9A 558 3.40e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21858,27785,28772 1ehaA 558 3.71e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21859,27786,28773 2fusA 467 3.91e+01 1furA a.127.1.1 19409 2a9uA 144 4.13e+01 1hg3A 225 4.38e+01 1hg3A c.1.1.1 61025 1k32A 1045 4.57e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1vdkA 466 4.61e+01 a.127.1.1 100561 1n6eA 1071 4.66e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1xx5A 221 4.77e+01 1fn4B 218 4.79e+01 b.1.1.1,b.1.1.2 59886,59887 1ps9A 671 5.01e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1gtzA 156 5.21e+01 c.23.13.1 70539 1gu1A 156 5.24e+01 c.23.13.1 70563 2bt4A 157 5.26e+01 1fzqA 181 5.47e+01 1hurA c.37.1.8 32060 1gbnA 402 5.93e+01 2dkb c.67.1.4 34455 1y7mA 164 5.95e+01 1wkjA 137 6.01e+01 2oatA 439 6.12e+01 2dkb c.67.1.4 34452 2byjA 439 6.17e+01 1dxy 333 6.18e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 2beiA 170 6.34e+01 1gq6A 313 6.34e+01 c.42.1.1 70341 1rlzA 369 6.39e+01 c.31.1.1 104989 1dhs 361 6.39e+01 1dhs c.31.1.1 31727 2a2cA 478 6.47e+01 2bylA 439 6.57e+01 1s1mA 545 6.59e+01 c.23.16.1,c.37.1.10 105201,105202 1vdwA 254 6.78e+01 e.7.1.1 100569 2fsjA 346 6.82e+01 1cdoA 374 6.90e+01 2ohxA b.35.1.2,c.2.1.1 24747,29763 1kq7A 467 7.08e+01 a.127.1.1 72866 1xo5A 183 7.10e+01 1wp0A 165 7.10e+01 1hh2P 344 7.33e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 2fkcA 247 7.41e+01 2fug4 409 7.55e+01 2ggtA 164 7.60e+01 1ijqA 316 7.63e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1u2zA 433 7.66e+01 c.66.1.31 107626 1kk1A 410 7.84e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1xr7A 460 7.86e+01 1xfoA 357 7.90e+01 2gqkA 173 7.94e+01 1kk3A 410 8.27e+01 b.43.3.1,b.44.1.1,c.37.1.8 72640,72641,72642 1noj 842 8.29e+01 1a8i c.87.1.4 35479 1y0yA 353 8.33e+01 1hzmA 154 8.35e+01 c.46.1.1 65975 1xc7A 842 8.64e+01 1abbA 828 8.65e+01 1a8i c.87.1.4 35536 1n7dA 699 8.67e+01 b.68.5.1,g.3.11.1,g.3.11.1,g.3.11.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1 80236,80237,80238,80239,80240,80241,80242,80243,80244,80245 1h5uA 842 8.70e+01 1a8i c.87.1.4 60655 1c50A 830 8.70e+01 1a8i c.87.1.4 35512 1ou5A 448 8.70e+01 a.173.1.1,d.218.1.4 87445,87446 1vgpA 373 8.81e+01 2g0tA 350 8.92e+01