# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1uqrA 154 1.21e-01 c.23.13.1 99779 1o9rA 162 1.75e-01 a.25.1.1 86706 1xr4A 509 6.41e-01 1yarA 233 7.28e-01 1fzqA 181 7.62e-01 1hurA c.37.1.8 32060 1p0kA 349 7.65e-01 c.1.4.1 87648 2chnA 716 1.00e+00 1vdkA 466 1.15e+00 a.127.1.1 100561 1sg6A 393 1.28e+00 e.22.1.1 105522 1z41A 338 1.51e+00 1h05A 146 1.65e+00 c.23.13.1 76433 1gtzA 156 1.78e+00 c.23.13.1 70539 1yacA 208 1.79e+00 1yacA c.33.1.3 31757 1dkuA 317 1.79e+00 1dkuA c.61.1.2,c.61.1.2 34118,34119 1e8gA 560 2.05e+00 1qltA d.58.32.1,d.145.1.1 39455,41718 2g8lA 299 2.05e+00 1ki9A 192 2.10e+00 c.37.1.1 84404 1khtA 192 2.30e+00 c.37.1.1 84401 1w0mA 226 2.34e+00 c.1.1.1 109027 1vbuA 328 2.39e+00 1mw9X 592 2.62e+00 e.10.1.1 91480 1wpoA 256 2.66e+00 1lay b.57.1.1 27012 1mr3F 181 2.69e+00 c.37.1.8 79422 1sz7A 200 2.73e+00 1l4uA 176 2.92e+00 c.37.1.2 73568 1u9yA 284 2.92e+00 1ypfA 336 3.08e+00 2a0b 125 3.26e+00 2a0b a.24.10.1 16630 1t3gA 159 3.35e+00 2bvlA 543 3.66e+00 1dosA 358 3.83e+00 1dosA c.1.10.2 29175 1pa7A 130 3.97e+00 a.40.1.1 94410 1dpsA 167 4.13e+00 1dpsA a.25.1.1 16716 1xyzA 347 4.67e+00 1taxA c.1.8.3 28804 1rk6A 496 4.69e+00 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1c93A 265 5.12e+00 2ebn c.1.8.5 28998 1uf3A 228 5.32e+00 d.159.1.6 99317 2gnoA 305 5.42e+00 1uf5A 303 5.46e+00 d.160.1.2 107808 2f5xA 312 5.98e+00 2b06A 155 6.06e+00 1tzjA 338 6.08e+00 1nswA 105 6.16e+00 c.47.1.1 92097 1p1xA 260 6.19e+00 c.1.10.1 104060 1vqoO 116 6.30e+00 1edt 271 6.32e+00 2ebn c.1.8.5 28993 1xesA 413 6.32e+00 1g8lA 411 6.66e+00 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1i60A 278 6.71e+00 c.1.15.4 71118 1f89A 291 6.82e+00 d.160.1.1 64988 1uuyA 167 6.94e+00 c.57.1.1 108059 1wy1A 172 7.30e+00 1php 394 7.58e+00 16pk c.86.1.1 35452 1z83A 196 7.65e+00 1j0dA 341 7.68e+00 c.79.1.1 83902 1h3nA 878 7.82e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2f51A 118 7.97e+00 1c0pA 363 8.10e+00 1an9A c.4.1.2,d.16.1.3 30647,37934 1k32A 1045 8.66e+00 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2f6hX 419 8.80e+00 1gudA 288 8.97e+00 c.93.1.1 83326 1hyeA 313 9.06e+00 2cmd c.2.1.5,d.162.1.1 61400,61401 1x38A 602 9.08e+00 1o5kA 306 9.70e+00 c.1.10.1 92504 1o3yA 166 9.81e+00 c.37.1.8 86618 1pdo 135 9.89e+00 1pdo c.54.1.1 33376 1pii 452 1.01e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1zj6A 187 1.08e+01 1qksA 567 1.10e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1g2qA 187 1.12e+01 c.61.1.1 65117 1uptA 171 1.14e+01 c.37.1.8 99767 1j96A 323 1.16e+01 c.1.7.1 71616 1vjgA 218 1.16e+01 c.23.10.6 100810 1xm3A 264 1.17e+01 1mv8A 436 1.21e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1hrhA 136 1.22e+01 1rthA c.55.3.1 33577 1meoA 209 1.24e+01 c.65.1.1 79035 1lxjA 104 1.26e+01 d.58.48.1 84736 1vr6A 350 1.28e+01 1nf1A 333 1.34e+01 1nf1A a.116.1.2 19110 2cbiA 594 1.42e+01 2tpsA 227 1.43e+01 2tpsA c.1.3.1 28591 4pgaA 337 1.47e+01 4pgaA c.88.1.1 35565 1x42A 232 1.48e+01 2bsxA 253 1.51e+01 1h6kA 757 1.53e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1zndA 174 1.54e+01 1sbyA 254 1.54e+01 2cmuA 342 1.56e+01 1ug7A 128 1.61e+01 a.24.24.1 107824 1x1nA 524 1.64e+01 1wwkA 307 1.65e+01 2aotA 292 1.67e+01 1qy1A 174 1.67e+01 b.60.1.1 96568 1fl2A 310 1.68e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1p80A 753 1.68e+01 c.23.16.3,e.5.1.1 94337,94338 1lw7A 365 1.74e+01 c.26.1.3,c.37.1.1 74295,74296 1lvaA 258 1.75e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1x7yB 342 1.75e+01 1xkrA 206 1.75e+01 1t6cA 315 1.88e+01 c.55.1.8,c.55.1.8 106558,106559 1a4iA 301 1.88e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1y5eA 169 1.91e+01 1u2zA 433 1.94e+01 c.66.1.31 107626 1zy9A 564 1.99e+01 2absA 383 2.02e+01 2ffcA 353 2.02e+01 1izcA 339 2.04e+01 c.1.12.5 83838 1nfp 228 2.04e+01 1nfp c.1.16.2 29555 2a2fX 325 2.06e+01 1qd1A 325 2.08e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1r8sA 164 2.09e+01 c.37.1.8 97247 1ituA 369 2.10e+01 c.1.9.7 71423 2bfdB 345 2.10e+01 1bolA 222 2.16e+01 1bolA d.124.1.1 41120 1jubA 311 2.18e+01 c.1.4.1 90908 1amuA 563 2.20e+01 1amuA e.23.1.1 43351 1s95A 333 2.26e+01 d.159.1.3 105375 1rd5A 262 2.32e+01 1gefA 123 2.38e+01 1gefA c.52.1.18 60465 1cg5A 141 2.38e+01 1abwA a.1.1.2 15406 7odcA 424 2.40e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1khyA 148 2.42e+01 a.174.1.1 77410 1i3dA 146 2.48e+01 a.1.1.2 61587 1d2zB 153 2.49e+01 1d2zB a.77.1.2 18439 1x9iA 302 2.50e+01 1kafA 108 2.50e+01 d.199.1.1 68372 1t0iA 191 2.52e+01 c.23.5.4 106209 1dxy 333 2.58e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1jyaA 130 2.64e+01 d.198.1.1 67453 1zzmA 259 2.70e+01 1yf3A 259 2.70e+01 1jndA 420 2.70e+01 c.1.8.5,d.26.3.1 71757,71758 1nf2A 268 2.71e+01 c.108.1.10 91849 1u0fA 564 2.72e+01 1ib2A 349 2.83e+01 1ib2A a.118.1.8 62141 1yb2A 275 2.84e+01 1i5nA 146 2.87e+01 1i5nA a.24.10.3 61805 1dhn 121 2.87e+01 1dhn d.96.1.3 40663 1tl9A 339 2.90e+01 1auoA 218 2.91e+01 1auoA c.69.1.14 34716 2fymA 431 2.92e+01 1i36A 264 2.94e+01 a.100.1.8,c.2.1.6 71108,71109 2gq1A 332 3.00e+01 1tjoA 182 3.01e+01 1ceo 343 3.03e+01 1ceo c.1.8.3 28808 2b3hA 329 3.09e+01 1ii7A 333 3.12e+01 1ii7A d.159.1.4 62415 2a9gA 418 3.13e+01 1yt8A 539 3.15e+01 1vl2A 421 3.26e+01 c.26.2.1,d.210.1.1 108708,108709 1vizA 240 3.29e+01 c.1.4.1 100784 1v4aA 440 3.35e+01 a.24.16.4,d.218.1.9 108350,108351 1zbqA 327 3.42e+01 1vp8A 201 3.44e+01 1sazA 381 3.45e+01 1c7gA 456 3.49e+01 c.67.1.2 90415 1pq4A 291 3.52e+01 c.92.2.2 94995 2plc 274 3.55e+01 2plc c.1.18.2 29614 2cxnA 557 3.56e+01 1mkmA 249 3.59e+01 a.4.5.33,d.110.2.2 79242,79243 1vqoB 338 3.61e+01 1ywfA 296 3.63e+01 1im8A 244 3.65e+01 c.66.1.14 66212 1sflA 238 3.67e+01 1ufoA 238 3.72e+01 c.69.1.27 99344 1oz9A 150 3.78e+01 d.92.1.15 93808 1o60A 292 3.84e+01 c.1.10.4 92532 1l6wA 220 3.88e+01 c.1.10.1 73632 1tuzA 118 3.90e+01 2gx9A 129 3.92e+01 1w41A 101 3.92e+01 1l1qA 186 3.94e+01 c.61.1.1 77653 1gdhA 320 3.96e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 1k0wA 231 4.05e+01 c.74.1.1 77220 1z77A 200 4.09e+01 2czdA 208 4.11e+01 1r6fA 310 4.11e+01 e.46.1.1 97149 1dofA 403 4.13e+01 1c3cA a.127.1.1 19429 1rz3A 201 4.19e+01 c.37.1.6 98132 1mldA 314 4.27e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1eemA 241 4.27e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1midA 91 4.30e+01 a.52.1.1 91280 1wyzA 242 4.33e+01 1sc6A 404 4.34e+01 2f9dA 125 4.36e+01 1e6cA 173 4.37e+01 1shkA c.37.1.2 59296 1jayA 212 4.42e+01 c.2.1.6 66478 1eljA 381 4.62e+01 4mbp c.94.1.1 35791 8abp 306 4.62e+01 8abp c.93.1.1 35647 1q9uA 130 4.63e+01 d.129.7.1 96314 1ir6A 424 4.71e+01 c.107.1.2 71342 2aeeA 211 4.73e+01 2pth 193 4.74e+01 2pth c.56.3.1 33793 2ghpA 292 4.75e+01 1mxmA 254 4.77e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1x2iA 75 4.80e+01 1jpzA 473 4.82e+01 a.104.1.1 67069 1x72A 334 4.87e+01 d.126.1.6 109495 1hzdA 272 4.87e+01 c.14.1.3 65969 1nrlA 316 4.90e+01 a.123.1.1 92091 1byi 224 4.91e+01 1byi c.37.1.10 32199 2d13A 227 4.92e+01 1q45A 391 4.96e+01 c.1.4.1 95780 1ql0A 241 4.99e+01 1qaeA d.4.1.2 37139 1iv8A 720 5.02e+01 b.71.1.1,c.1.8.1 76842,76843 1yzfA 195 5.07e+01 1pj5A 830 5.10e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2bhoA 130 5.20e+01 1q1fA 151 5.29e+01 a.1.1.2 104476 1fmjA 351 5.34e+01 c.37.1.5 59879 1wd5A 208 5.35e+01 1cliA 345 5.37e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1jfuA 186 5.39e+01 c.47.1.10 62940 1o20A 427 5.41e+01 c.82.1.1 86556 1jigA 146 5.42e+01 a.25.1.1 71685 1wwiA 148 5.44e+01 1xfcA 384 5.45e+01 2g62A 325 5.46e+01 1o1yA 239 5.46e+01 c.23.16.1 86554 1h09A 338 5.49e+01 b.109.1.1,c.1.8.8 83420,83421 1ccwA 137 5.51e+01 1be1 c.23.6.1 31238 1ny1A 240 5.60e+01 c.6.2.3 86395 1vplA 256 5.65e+01 1c9kA 180 5.67e+01 1c9kB c.37.1.11 32363 1lucA 355 5.68e+01 1lucA c.1.16.1 29547 1hnjA 317 5.71e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1kshA 186 5.75e+01 c.37.1.8 72914 2d1sA 548 5.86e+01 1j6oA 268 5.89e+01 c.1.9.12 77088 1o50A 157 5.93e+01 d.37.1.1,d.37.1.1 92478,92479 2ew8A 249 5.98e+01 2fug7 129 6.00e+01 1w68A 390 6.00e+01 a.25.1.2 109216 1oyjA 231 6.01e+01 a.45.1.1,c.47.1.5 87597,87598 1ezwA 349 6.03e+01 1ezwA c.1.16.3 29558 1m0uA 249 6.04e+01 a.45.1.1,c.47.1.5 78359,78360 1lehA 364 6.05e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1s99A 200 6.06e+01 1vhcA 224 6.11e+01 c.1.10.1 100661 1o5xA 248 6.14e+01 c.1.1.1 92528 1km4A 247 6.15e+01 c.1.2.3 72740 2cu3A 64 6.16e+01 1pgtA 210 6.18e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1ihjA 98 6.19e+01 1pdr b.36.1.1 62382 1zp4A 304 6.23e+01 1wosA 364 6.24e+01 b.44.2.1,d.250.1.1 109468,109469 2aexA 346 6.24e+01 1wjtA 103 6.26e+01 1ra6A 461 6.27e+01 e.8.1.4 104879 1iukA 140 6.29e+01 c.2.1.8 83712 1xtaA 221 6.30e+01 1g5hA 454 6.32e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1xi3A 215 6.36e+01 c.1.3.1 109601 1wi0A 113 6.36e+01 2cw6A 298 6.37e+01 1pszA 303 6.43e+01 1toaA c.92.2.2 35600 1wi6A 88 6.47e+01 1dpgA 485 6.74e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1uwmA 106 6.77e+01 1lqaA 346 6.82e+01 c.1.7.1 84674 1vb5A 276 6.89e+01 1n2aA 201 6.93e+01 a.45.1.1,c.47.1.5 91553,91554 2igd 61 6.97e+01 2igd d.15.7.1 37821 1yrbA 262 7.06e+01 1lbkA 208 7.10e+01 a.45.1.1,c.47.1.5 73809,73810 1zhvA 134 7.33e+01 1xg7A 250 7.44e+01 1jmvA 141 7.46e+01 c.26.2.4 66897 1k4nA 192 7.47e+01 d.32.1.5 72059 1vhnA 318 7.59e+01 c.1.4.1 100693 1i0lA 221 7.59e+01 c.61.1.1 71096 1ixh 321 7.61e+01 1ixh c.94.1.1 35761 1i4jA 110 7.64e+01 d.55.1.1 76734 2b5dX 528 7.70e+01 1tz9A 367 7.76e+01 c.1.15.6 107466 1w9yA 319 7.76e+01 1vk0A 206 7.77e+01 c.55.3.5 100839 1o6zA 303 7.83e+01 c.2.1.5,d.162.1.1 81107,81108 1siqA 392 7.86e+01 a.29.3.1,e.6.1.1 105585,105586 1iicA 422 8.03e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1o4sA 389 8.03e+01 c.67.1.1 86620 1ep3A 311 8.07e+01 2dorA c.1.4.1 28597 1tjyA 316 8.09e+01 c.93.1.1 107062 1n3kA 130 8.09e+01 a.77.1.4 79965 1nlfA 279 8.11e+01 c.37.1.11 85850 1zn8A 180 8.21e+01 2boqA 331 8.30e+01 1q8iA 783 8.33e+01 c.55.3.5,e.8.1.1 96208,96209 2trxA 108 8.34e+01 1thx c.47.1.1 32719 2axpA 173 8.37e+01 1z2lA 423 8.51e+01 1xsvA 113 8.52e+01 2bx6A 350 8.54e+01 1ja1A 622 8.54e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2a5dA 175 8.58e+01 1k2xB 143 8.58e+01 1nbaA 264 8.63e+01 1nbaA c.33.1.3 31753 1va4A 279 8.66e+01 c.69.1.12 108458 1vqzA 341 8.73e+01 1wgzA 510 8.74e+01 1yhtA 367 8.77e+01 1cr1A 296 8.81e+01 1cr1A c.37.1.11 32286 1dxeA 256 8.92e+01 1dxeA c.1.12.5 29310 1e6yA 569 8.98e+01 1mroA a.89.1.1,d.58.31.2 18529,39447 1vixA 420 8.98e+01 c.56.5.4,d.58.19.1 100777,100778