# List of top-scoring protein chains for T0296.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kyzA 365 8.52e-01 a.4.5.29,c.66.1.12 73312,73313 1bxkA 355 5.32e+00 1bxkA c.2.1.2 29803 1x8lA 351 8.73e+00 1uqrA 154 1.04e+01 c.23.13.1 99779 1fmjA 351 1.19e+01 c.37.1.5 59879 2c0jA 161 1.22e+01 1wc9A 165 1.39e+01 1wc8A 180 1.40e+01 1vpgA 192 1.44e+01 1sjqA 105 1.59e+01 d.58.7.1 105660 2ad9A 119 1.61e+01 1oj6A 151 1.67e+01 a.1.1.2 93088 1j0aA 325 1.74e+01 c.79.1.1 83871 1hcuA 503 1.75e+01 a.102.2.1 65796 1sz7A 200 1.78e+01 2c07A 285 1.97e+01 2c2aA 258 2.15e+01 2cnd 270 2.17e+01 1ndh b.43.4.2,c.25.1.1 25659,31549 1ydnA 295 2.22e+01 1xoiA 846 2.34e+01 1l5sA 847 2.42e+01 c.87.1.4 77716 1fc0A 846 2.42e+01 1a8i c.87.1.4 35473 1xtaA 221 2.45e+01 1zkdA 387 2.53e+01 1gefA 123 2.54e+01 1gefA c.52.1.18 60465 1q1fA 151 2.58e+01 a.1.1.2 104476 1tozA 116 2.62e+01 1hh2P 344 2.64e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1cne 270 2.67e+01 1ndh b.43.4.2,c.25.1.1 25661,31551 1oxsC 353 2.76e+01 b.40.6.3,c.37.1.12 87519,87520 1khtA 192 2.78e+01 c.37.1.1 84401 1eh9A 558 2.88e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21858,27785,28772 2f6uA 234 2.90e+01 1oxxK 353 3.06e+01 b.40.6.3,c.37.1.12 93715,93716 1ehaA 558 3.12e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21859,27786,28773 2a9uA 144 3.24e+01 2boqA 331 3.25e+01 1ti6A 875 3.31e+01 b.52.2.2,c.81.1.1 106974,106975 1z8dA 842 3.60e+01 1l2fA 369 3.73e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 91044,91045,91046,91047 1gbnA 402 3.94e+01 2dkb c.67.1.4 34455 1fn4B 218 3.95e+01 b.1.1.1,b.1.1.2 59886,59887 2oatA 439 4.07e+01 2dkb c.67.1.4 34452 2byjA 439 4.12e+01 1vdkA 466 4.25e+01 a.127.1.1 100561 1fuoA 467 4.26e+01 1furA a.127.1.1 19411 1fuqA 472 4.28e+01 1furA a.127.1.1 19405 1k32A 1045 4.32e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 2bylA 439 4.36e+01 1xx5A 221 4.38e+01 1n6eA 1071 4.40e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 1hg3A 225 4.47e+01 1hg3A c.1.1.1 61025 1vdwA 254 4.56e+01 e.7.1.1 100569 1y7mA 164 4.67e+01 1ou5A 448 5.13e+01 a.173.1.1,d.218.1.4 87445,87446 2fusA 467 5.21e+01 1furA a.127.1.1 19409 2beiA 170 5.21e+01 1ps9A 671 5.69e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1fzqA 181 5.77e+01 1hurA c.37.1.8 32060 1gq6A 313 5.84e+01 c.42.1.1 70341 1gtzA 156 5.95e+01 c.23.13.1 70539 1f76A 336 5.96e+01 c.1.4.1 76160 1gu1A 156 5.99e+01 c.23.13.1 70563 2bt4A 157 6.01e+01 1dxy 333 6.23e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1xo5A 183 6.39e+01 1wkjA 137 6.42e+01 2fsjA 346 6.61e+01 1kk1A 410 7.21e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1kk3A 410 7.59e+01 b.43.3.1,b.44.1.1,c.37.1.8 72640,72641,72642 1dhs 361 7.73e+01 1dhs c.31.1.1 31727 1rlzA 369 7.73e+01 c.31.1.1 104989 1wp0A 165 7.76e+01 1vgpA 373 7.83e+01 1hzmA 154 7.98e+01 c.46.1.1 65975 2ggtA 164 8.29e+01 1ijqA 316 8.45e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 2fug4 409 8.59e+01 2gqkA 173 8.60e+01 1u2zA 433 8.77e+01 c.66.1.31 107626 2g0tA 350 8.79e+01 1s1mA 545 8.93e+01 c.23.16.1,c.37.1.10 105201,105202