# List of top-scoring protein chains for T0296.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o20A 427 7.80e-02 c.82.1.1 86556 1oxsC 353 7.03e-01 b.40.6.3,c.37.1.12 87519,87520 1oxxK 353 9.38e-01 b.40.6.3,c.37.1.12 93715,93716 1mjhA 162 2.06e+00 1mjhA c.26.2.4 31639 1nbaA 264 4.16e+00 1nbaA c.33.1.3 31753 1bxkA 355 4.22e+00 1bxkA c.2.1.2 29803 1g62A 224 5.50e+00 1g61A d.126.1.1 41128 1dhs 361 6.16e+00 1dhs c.31.1.1 31727 1rlzA 369 6.27e+00 c.31.1.1 104989 1rpa 342 7.19e+00 1cviA c.60.1.2 33983 1pkhA 204 7.28e+00 b.85.4.1 94832 1lehA 364 8.53e+00 1bw9A c.2.1.7,c.58.1.1 30268,33916 1s3gA 217 8.61e+00 c.37.1.1,g.41.2.1 98433,98434 1pcxA 810 9.53e+00 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1m2vB 926 9.80e+00 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78497,78498,78499,78500,78501 1b24A 188 1.09e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 2ey4A 333 1.22e+01 1ps9A 671 1.26e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1oj6A 151 1.36e+01 a.1.1.2 93088 2cf2C 342 1.38e+01 1eh9A 558 1.39e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21858,27785,28772 1hjqA 332 1.46e+01 c.1.8.3 83491 1lxkA 721 1.47e+01 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1ojoA 731 1.47e+01 a.102.3.2,b.24.1.1,b.30.5.2 93140,93141,93142 1ojnA 731 1.48e+01 a.102.3.2,b.24.1.1,b.30.5.2 93137,93138,93139 1n7oA 721 1.57e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1ojmA 729 1.65e+01 a.102.3.2,b.24.1.1,b.30.5.2 93134,93135,93136 1eguA 731 1.65e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1v5vA 401 1.67e+01 2c07A 285 1.79e+01 1ehaA 558 1.82e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21859,27786,28773 1ku0A 388 1.92e+01 c.69.1.18 72994 1s14A 194 1.92e+01 d.122.1.2 98329 1j0aA 325 1.96e+01 c.79.1.1 83871 1mv8A 436 1.97e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1u6mA 199 2.27e+01 2anuA 255 2.37e+01 1xoiA 846 2.37e+01 1l5sA 847 2.37e+01 c.87.1.4 77716 1fc0A 846 2.37e+01 1a8i c.87.1.4 35473 1n7pA 721 2.56e+01 a.102.3.2,b.24.1.1,b.30.5.2 80262,80263,80264 2fmpA 335 2.56e+01 1tozA 116 2.61e+01 1n7rA 721 2.68e+01 a.102.3.2,b.24.1.1,b.30.5.2 80268,80269,80270 1n7nA 721 2.70e+01 a.102.3.2,b.24.1.1,b.30.5.2 80256,80257,80258 2bw3A 534 2.82e+01 1n7qA 721 2.83e+01 a.102.3.2,b.24.1.1,b.30.5.2 80265,80266,80267 1i8tA 367 2.97e+01 c.4.1.3,d.16.1.7 66094,66095 1b3qA 379 3.05e+01 1b3qA a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1r6tA 477 3.17e+01 a.16.1.3,c.26.1.1 97160,97161 1sz7A 200 3.38e+01 1y6zA 263 3.52e+01 1q1fA 151 3.68e+01 a.1.1.2 104476 1r6uA 437 3.74e+01 c.26.1.1 97163 2bsxA 253 3.75e+01 1dekA 241 3.86e+01 1dekA c.37.1.1 31842 2eweA 353 4.19e+01 1q1gA 276 4.20e+01 c.56.2.1 95574 1zkdA 387 4.28e+01 1a6l 106 4.33e+01 1a6l d.58.1.2 38966 1vdkA 466 4.34e+01 a.127.1.1 100561 1kf0A 416 4.51e+01 c.86.1.1 72393 1o88A 353 4.56e+01 b.80.1.1 81178 3ranA 216 4.68e+01 1byuA c.37.1.8 32028 1mw9X 592 4.69e+01 e.10.1.1 91480 1ijqA 316 4.70e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1ecl 597 4.72e+01 1ecl e.10.1.1 43238 1qg4A 216 4.74e+01 1byuA c.37.1.8 32035 2b1xA 470 4.78e+01 1cy2A 599 4.81e+01 1ecl e.10.1.1 43241 1i2mA 216 4.83e+01 1byuA c.37.1.8 61568 1pmd 675 4.87e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37491,37492,42562,42771 1rrpA 204 4.87e+01 1byuA c.37.1.8 32042 1frm 106 4.92e+01 1a6l d.58.1.2 38973 1jrbA 311 5.13e+01 c.1.4.1 90904 1qg2A 216 5.17e+01 1byuA c.37.1.8 32034 1dqpA 230 5.18e+01 1dqnA c.61.1.1 34069 1sq6A 253 5.18e+01 c.56.2.1 98964 1ji3A 388 5.37e+01 c.69.1.18 77115 1va6A 518 5.38e+01 1byuA 216 5.41e+01 1byuA c.37.1.8 32032 1qmeA 702 5.43e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1j3mA 129 5.49e+01 d.129.7.1 103836 1yoxA 250 5.49e+01 1o5wA 534 5.52e+01 c.3.1.2,d.16.1.5 92520,92521 1rwiA 270 5.55e+01 b.68.9.1 97987 1glqA 209 5.57e+01 1pgtA a.45.1.1,c.47.1.5 17588,32882 1y0lB 226 5.66e+01 2bhuA 602 5.67e+01 1y18B 226 5.84e+01 2cevA 299 5.93e+01 1d3vA c.42.1.1 32576 1frl 106 5.94e+01 1a6l d.58.1.2 38976 1vjdA 416 5.97e+01 c.86.1.1 100806 1fri 106 5.99e+01 1a6l d.58.1.2 38964 1nd4A 264 6.01e+01 d.144.1.6 91815 1vpgA 192 6.09e+01 1wc8A 180 6.12e+01 1uqrA 154 6.23e+01 c.23.13.1 99779 1jf8A 131 6.37e+01 c.44.1.1 66621 1q7zA 566 6.43e+01 c.1.21.2,c.1.26.1 96090,96091 1ljlA 131 6.45e+01 c.44.1.1 73939 1ljuA 131 6.45e+01 c.44.1.1 73944 1bhy 482 6.55e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30583,30584,40213 1mjeA 649 6.60e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79193,79194,79195,79196,79197 1ojt 482 6.78e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30581,30582,40212 1fsu 492 6.88e+01 1auk c.76.1.2 35032 1kk3A 410 7.07e+01 b.43.3.1,b.44.1.1,c.37.1.8 72640,72641,72642 1ubeA 349 7.13e+01 c.37.1.11,d.48.1.1 88412,88413 1wc9A 165 7.21e+01 1uocA 289 7.22e+01 c.55.3.9 99686 2a5hA 416 7.22e+01 1bpe 335 7.24e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 18076,75815,75816 1dq3A 454 7.25e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2fd2 106 7.32e+01 1a6l d.58.1.2 38961 2c0jA 161 7.34e+01 1iyjB 817 7.42e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1huzA 335 7.43e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 61281,75850,75851 1lk0A 131 7.47e+01 c.44.1.1 73948 1rp5A 702 7.48e+01 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 97694,97695,97696,97697 1obdA 306 7.55e+01 d.143.1.1 86767 1n7dA 699 7.58e+01 b.68.5.1,g.3.11.1,g.3.11.1,g.3.11.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1,g.12.1.1 80236,80237,80238,80239,80240,80241,80242,80243,80244,80245 1i2qA 316 7.63e+01 1onrA c.1.10.1 61578 1fdd 106 7.67e+01 1a6l d.58.1.2 38960 1r85A 379 7.70e+01 c.1.8.3 104839 1gzhB 249 7.97e+01 c.15.1.4,c.15.1.4 70808,70809 1ou5A 448 8.07e+01 a.173.1.1,d.218.1.4 87445,87446 1kzyC 259 8.16e+01 c.15.1.4,c.15.1.4 73383,73384 1cbx 307 8.21e+01 1aye c.56.5.1 33813 1xtoA 311 8.26e+01 2amxA 376 8.34e+01 1pyyA 702 8.60e+01 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 95385,95386,95387,95388 1sflA 238 8.67e+01 1miuA 738 8.71e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 1d3wA 106 8.72e+01 1a6l d.58.1.2 38957 1hzmA 154 8.77e+01 c.46.1.1 65975 1ib2A 349 8.81e+01 1ib2A a.118.1.8 62141 1rxiA 131 8.86e+01 c.44.1.1 105116 1l4uA 176 8.89e+01 c.37.1.2 73568 1yqdA 366 8.96e+01