# List of top-scoring protein chains for T0296.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o20A 427 3.10e-02 c.82.1.1 86556 1ou5A 448 4.51e-01 a.173.1.1,d.218.1.4 87445,87446 1zkdA 387 7.39e-01 1ubeA 349 1.37e+00 c.37.1.11,d.48.1.1 88412,88413 1mjhA 162 1.74e+00 1mjhA c.26.2.4 31639 2c2aA 258 3.28e+00 2bgkA 278 4.34e+00 1fezA 256 4.93e+00 1fezA c.108.1.3 43343 1rqlA 267 4.97e+00 c.108.1.3 97750 1vkzA 412 5.91e+00 b.84.2.1,c.30.1.1,d.142.1.2 108698,108699,108700 1rdfA 267 6.14e+00 c.108.1.3 104884 1bxkA 355 6.53e+00 1bxkA c.2.1.2 29803 1g0dA 695 6.85e+00 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1kyzA 365 8.24e+00 a.4.5.29,c.66.1.12 73312,73313 1xnaA 183 8.51e+00 1xnaA b.18.1.8 23773 1swvA 267 8.59e+00 1cv2A 296 9.93e+00 1bn6A c.69.1.8 34680 1g42A 296 9.94e+00 c.69.1.8 65139 1iz7A 295 9.96e+00 c.69.1.8 76982 1mj5A 302 9.96e+00 c.69.1.8 91285 1g19A 350 1.04e+01 2reb c.37.1.11,d.48.1.1 32284,38770 1xfoA 357 1.08e+01 1y0yA 353 1.18e+01 1ojmA 729 1.28e+01 a.102.3.2,b.24.1.1,b.30.5.2 93134,93135,93136 1eguA 731 1.28e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1ojoA 731 1.28e+01 a.102.3.2,b.24.1.1,b.30.5.2 93140,93141,93142 1ojnA 731 1.29e+01 a.102.3.2,b.24.1.1,b.30.5.2 93137,93138,93139 1lxkA 721 1.29e+01 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 2cfxA 144 1.33e+01 1z8dA 842 1.35e+01 1hg3A 225 1.39e+01 1hg3A c.1.1.1 61025 1n7oA 721 1.42e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1o60A 292 1.46e+01 c.1.10.4 92532 2bkxA 242 1.59e+01 1u2zA 433 1.67e+01 c.66.1.31 107626 1n7qA 721 1.71e+01 a.102.3.2,b.24.1.1,b.30.5.2 80265,80266,80267 1n7rA 721 1.90e+01 a.102.3.2,b.24.1.1,b.30.5.2 80268,80269,80270 1b0aA 288 1.92e+01 1a4iA c.2.1.7,c.58.1.2 30286,33934 1n7nA 721 1.99e+01 a.102.3.2,b.24.1.1,b.30.5.2 80256,80257,80258 1n7pA 721 2.20e+01 a.102.3.2,b.24.1.1,b.30.5.2 80262,80263,80264 2ad9A 119 2.35e+01 1sjqA 105 2.41e+01 d.58.7.1 105660 1upaA 573 2.42e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1tozA 116 2.44e+01 1j0aA 325 2.64e+01 c.79.1.1 83871 1qo8A 566 2.65e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1g7uA 284 2.65e+01 1d9eA c.1.10.4 60334 2beiA 170 2.66e+01 1phwA 284 2.76e+01 c.1.10.4 104155 1o6vA 466 2.80e+01 b.1.18.15,c.10.2.1 81099,81100 1vk3A 615 3.01e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1obdA 306 3.05e+01 d.143.1.1 86767 1fuoA 467 3.05e+01 1furA a.127.1.1 19411 2a2cA 478 3.06e+01 1fuqA 472 3.06e+01 1furA a.127.1.1 19405 2ey4A 333 3.08e+01 1smqA 399 3.11e+01 a.25.1.2 105766 1jk0A 419 3.17e+01 a.25.1.2 63142 2g0tA 350 3.29e+01 1xoiA 846 3.33e+01 1rajA 393 3.35e+01 e.8.1.4 104881 1l5sA 847 3.37e+01 c.87.1.4 77716 1fc0A 846 3.37e+01 1a8i c.87.1.4 35473 1bmv1 198 3.48e+01 1bmv1 1j1nA 492 3.58e+01 c.94.1.1 83978 1sflA 238 3.58e+01 1pgl1 185 3.58e+01 1y6zA 263 3.67e+01 2bt4A 157 3.69e+01 1gu1A 156 3.69e+01 c.23.13.1 70563 1gtzA 156 3.69e+01 c.23.13.1 70539 1wp9A 494 3.74e+01 1uqrA 154 3.81e+01 c.23.13.1 99779 1eljA 381 3.82e+01 4mbp c.94.1.1 35791 1f76A 336 3.93e+01 c.1.4.1 76160 1p5zB 263 4.01e+01 c.37.1.1 87815 1jsqA 582 4.04e+01 i.13.1.1 63270 2fusA 467 4.28e+01 1furA a.127.1.1 19409 1ijqA 316 4.40e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 2c1vA 338 4.42e+01 1b63A 333 4.48e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1zbqA 327 4.59e+01 1sfjA 238 4.60e+01 1b24A 188 4.66e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1wu6A 396 4.75e+01 1ezwA 349 4.78e+01 1ezwA c.1.16.3 29558 1dq3A 454 4.83e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2anuA 255 4.92e+01 1bknA 352 4.97e+01 1b63A d.14.1.3,d.122.1.2 37568,41109 1b62A 349 5.02e+01 1b63A d.14.1.3,d.122.1.2 37567,41108 2b7yA 182 5.24e+01 1mdp1 363 5.30e+01 4mbp 1uhvA 500 5.39e+01 b.71.1.2,c.1.8.3 99402,99403 1yxoA 328 5.55e+01 1lofC 181 5.56e+01 1led b.29.1.1 24077 1e4yA 214 5.61e+01 1zin c.37.1.1,g.41.2.1 31901,45181 2a5hA 416 5.68e+01 1nhjA 333 5.71e+01 d.14.1.3,d.122.1.2 85720,85721 1yoxA 250 5.83e+01 1jsmA 325 5.89e+01 b.19.1.2 63264 1lgcA 181 5.92e+01 1led b.29.1.1 24078 1e4vA 214 6.15e+01 1zin c.37.1.1,g.41.2.1 31903,45183 1gefA 123 6.23e+01 1gefA c.52.1.18 60465 2c07A 285 6.26e+01 1akeA 214 6.34e+01 1zin c.37.1.1,g.41.2.1 31905,45185 1dxlA 470 6.35e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30585,30586,40214 2c0jA 161 6.39e+01 1dhs 361 6.42e+01 1dhs c.31.1.1 31727 1rlzA 369 6.46e+01 c.31.1.1 104989 1noj 842 6.58e+01 1a8i c.87.1.4 35479 1nt2B 258 6.64e+01 a.183.1.1 86150 2boqA 331 6.72e+01 1xp4A 379 6.76e+01 1loeA 181 6.91e+01 1led b.29.1.1 24056 1mpyA 307 7.03e+01 1mpyA d.32.1.3,d.32.1.3 38508,38509 2c5wB 385 7.07e+01 1zq9A 285 7.08e+01 1vgpA 373 7.09e+01 1o70A 324 7.20e+01 b.118.1.1,b.118.1.1 81115,81116 1lgbA 181 7.28e+01 1led b.29.1.1 24081 2b1xA 470 7.29e+01 1unfX 238 7.34e+01 1wc9A 165 7.36e+01 1vpgA 192 7.40e+01 2a30A 248 7.43e+01 1i60A 278 7.46e+01 c.1.15.4 71118 1u6mA 199 7.57e+01 1ofsA 187 7.62e+01 b.29.1.1 86966 1r85A 379 7.66e+01 c.1.8.3 104839 1b6g 310 7.66e+01 1b6g c.69.1.8 34661 1ede 310 7.68e+01 1b6g c.69.1.8 34662 1c8yA 265 7.78e+01 2ebn c.1.8.5 28995 1kk3A 410 7.81e+01 b.43.3.1,b.44.1.1,c.37.1.8 72640,72641,72642 2ltnA 181 7.87e+01 1led b.29.1.1 24024 1wc8A 180 7.96e+01 1kk1A 410 8.04e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1wosA 364 8.09e+01 b.44.2.1,d.250.1.1 109468,109469 2aexA 346 8.11e+01 2c6wB 384 8.11e+01 1sz7A 200 8.21e+01 1xc7A 842 8.22e+01 1h5uA 842 8.24e+01 1a8i c.87.1.4 60655 1abbA 828 8.25e+01 1a8i c.87.1.4 35536 1c50A 830 8.25e+01 1a8i c.87.1.4 35512 1qi9A 556 8.40e+01 1qhbA a.111.1.2 19053 1bez 310 8.40e+01 1b6g c.69.1.8 34666 1cqwA 295 8.42e+01 1b6g c.69.1.8 34679 1yvoA 172 8.44e+01 1hjqA 332 8.51e+01 c.1.8.3 83491 1hqmA 313 8.56e+01 i.8.1.1 45972 1c91A 265 8.59e+01 2ebn c.1.8.5 29000 1xtaA 221 8.60e+01 2bqpA 234 8.64e+01 1led b.29.1.1 24026 1l4uA 176 8.77e+01 c.37.1.2 73568 2bl1A 172 8.77e+01 2bsxA 253 8.82e+01