# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1brwA 433 6.71e-02 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1i60A 278 8.95e-02 c.1.15.4 71118 1c93A 265 9.20e-02 2ebn c.1.8.5 28998 1edt 271 9.69e-02 2ebn c.1.8.5 28993 1gtzA 156 2.72e-01 c.23.13.1 70539 1h05A 146 4.15e-01 c.23.13.1 76433 1qtwA 285 4.30e-01 1qumA c.1.15.1 29392 1j0dA 341 4.61e-01 c.79.1.1 83902 1gqiA 708 4.67e-01 c.1.8.10,d.92.2.2 76279,76280 1pdo 135 4.88e-01 1pdo c.54.1.1 33376 1e4yA 214 5.57e-01 1zin c.37.1.1,g.41.2.1 31901,45181 1wvfA 520 7.00e-01 2bjvA 265 7.59e-01 1vdkA 466 9.05e-01 a.127.1.1 100561 1geqA 248 9.26e-01 2tysA c.1.2.4 28589 1p1xA 260 1.02e+00 c.1.10.1 104060 1ltzA 297 1.06e+00 d.178.1.1 74254 1x9iA 302 1.24e+00 1lv7A 257 1.38e+00 c.37.1.20 78232 1obdA 306 1.63e+00 d.143.1.1 86767 1xffA 240 1.70e+00 d.153.1.1 109580 1h3fA 432 1.75e+00 c.26.1.1,d.66.1.4 76631,76632 1ta8A 332 1.89e+00 1yxyA 234 2.15e+00 1hqkA 154 2.25e+00 c.16.1.1 65902 1e6uA 321 2.29e+00 1bsvA c.2.1.2 29805 1f74A 293 2.36e+00 1nal3 c.1.10.1 29079 1dozA 309 2.38e+00 1ak1 c.92.1.1 35592 1fvpA 231 2.44e+00 1nfp c.1.16.2 29556 7a3hA 303 2.51e+00 7a3hA c.1.8.3 28817 1ix9A 205 2.54e+00 a.2.11.1,d.44.1.1 76899,76900 16pk 415 2.57e+00 16pk c.86.1.1 35454 1tuaA 191 2.63e+00 d.51.1.1,d.51.1.1 107321,107322 1d0cA 444 2.66e+00 d.174.1.1 64769 1lzlA 323 2.87e+00 c.69.1.2 78306 1dbqA 289 2.91e+00 1qpzA c.93.1.1 35666 1dekA 241 2.98e+00 1dekA c.37.1.1 31842 1jmvA 141 3.02e+00 c.26.2.4 66897 1gesA 450 4.31e+00 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1jbkA 195 4.34e+00 c.37.1.20 71631 1i6pA 220 4.34e+00 1ddzA c.53.2.1 61848 1jx6A 342 4.47e+00 c.93.1.1 67406 1eny 268 4.77e+00 1eny c.2.1.2 29910 1jsmA 325 4.78e+00 b.19.1.2 63264 1ve1A 304 4.93e+00 1ir6A 424 5.07e+00 c.107.1.2 71342 1fkmA 396 5.09e+00 1fkmA a.69.2.1,a.69.2.1 18315,18316 1ra0A 430 5.16e+00 1k7cA 233 5.66e+00 c.23.10.4 68267 1zin 217 6.04e+00 1zin c.37.1.1,g.41.2.1 31915,45178 1v7wA 807 6.27e+00 a.102.1.4,b.30.5.3 108411,108412 1ag9A 175 6.51e+00 1rcf c.23.5.1 31178 1gq6A 313 6.55e+00 c.42.1.1 70341 1gjwA 637 6.58e+00 b.71.1.1,c.1.8.1 60582,60583 1jksA 294 7.70e+00 d.144.1.7 71710 1b0uA 262 8.03e+00 1b0uA c.37.1.12 32370 1dosA 358 8.73e+00 1dosA c.1.10.2 29175 1nxuA 333 8.74e+00 c.122.1.1 86389 2bkxA 242 9.00e+00 1r8sA 164 9.25e+00 c.37.1.8 97247 1gteA 1025 9.38e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 4uagA 437 9.50e+00 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1mw9X 592 9.56e+00 e.10.1.1 91480 1bw0A 416 9.88e+00 1bw0A c.67.1.1 34385 1pv5A 264 1.00e+01 d.251.1.1 95150 2dfkA 402 1.01e+01 1g8pA 350 1.01e+01 1g8pA c.37.1.20 60376 1bx4A 345 1.04e+01 1bx4A c.72.1.1 34935 1fzqA 181 1.16e+01 1hurA c.37.1.8 32060 1ewkA 490 1.16e+01 1ewkA c.93.1.1 35712 1rvkA 382 1.17e+01 c.1.11.2,d.54.1.1 97928,97929 1n55A 251 1.17e+01 c.1.1.1 80007 1nc5A 373 1.19e+01 a.102.1.6 85548 1n3lA 372 1.22e+01 c.26.1.1 79966 1uehA 253 1.34e+01 c.101.1.1 99259 1fnnA 389 1.34e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1ufoA 238 1.35e+01 c.69.1.27 99344 1nfp 228 1.35e+01 1nfp c.1.16.2 29555 1kfcA 268 1.39e+01 c.1.2.4 77371 1q8fA 313 1.39e+01 c.70.1.1 96203 1ihoA 283 1.41e+01 1ihoA c.26.1.4 62390 1iow 306 1.42e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1cliA 345 1.42e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1g8kA 825 1.43e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1jx4A 352 1.53e+01 d.240.1.1,e.8.1.7 90378,90379 1atlA 202 1.54e+01 1atlA d.92.1.9 40322 1jftA 340 1.55e+01 a.35.1.5,c.93.1.1 66652,66653 1bn7A 294 1.57e+01 1bn6A c.69.1.8 34677 1xm3A 264 1.61e+01 2tpsA 227 1.61e+01 2tpsA c.1.3.1 28591 1azsA 220 1.72e+01 1azsA d.58.29.1 39416 1v6sA 390 1.74e+01 c.86.1.1 100424 1fmcA 255 1.81e+01 1cydA c.2.1.2 29856 1ydyA 356 1.83e+01 1gntA 553 1.85e+01 e.26.1.1 70290 1o9iA 266 1.86e+01 a.25.1.3 92671 1hkhA 279 1.86e+01 c.69.1.12 90628 1k0wA 231 1.87e+01 c.74.1.1 77220 1hrkA 359 1.88e+01 1hrkA c.92.1.1 61228 1jkmB 361 1.89e+01 1jkmA c.69.1.2 34634 1t4hA 290 1.99e+01 d.144.1.7 106420 1dp4A 435 2.00e+01 1dp4A c.93.1.1 35710 1ja1A 622 2.02e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1jl3A 139 2.03e+01 c.44.1.1 66826 1bf6A 291 2.06e+01 1pscA c.1.9.3 29065 1jhdA 396 2.06e+01 b.122.1.3,c.26.1.5 66712,66713 1j6rA 214 2.08e+01 d.173.1.2 71598 1ml4A 308 2.09e+01 c.78.1.1,c.78.1.1 79255,79256 1vhtA 218 2.09e+01 c.37.1.1 100700 1xfiA 367 2.11e+01 e.50.1.1 109584 1f89A 291 2.11e+01 d.160.1.1 64988 1e0tA 470 2.16e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1ispA 181 2.21e+01 c.69.1.18 76778 1c7qA 445 2.21e+01 2pgi c.80.1.2 35307 1ixmA 192 2.23e+01 1ixmA d.123.1.1 41114 1aky 221 2.23e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1f60A 458 2.27e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1i0lA 221 2.28e+01 c.61.1.1 71096 1ad2 228 2.36e+01 1ad2 e.24.1.1 43353 1c3cA 429 2.39e+01 1c3cA a.127.1.1 19425 1g60A 260 2.42e+01 c.66.1.11 70151 1h21A 247 2.44e+01 a.138.1.3 76510 2a0b 125 2.45e+01 2a0b a.24.10.1 16630 1xszA 356 2.53e+01 1snyA 267 2.54e+01 c.2.1.2 105833 1jndA 420 2.55e+01 c.1.8.5,d.26.3.1 71757,71758 1a4iA 301 2.56e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1j8mF 297 2.56e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1qg8A 255 2.56e+01 1qg8A c.68.1.1 34505 1r89A 437 2.57e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1d4oA 184 2.57e+01 1d4oA c.31.1.4 31748 1kicA 339 2.61e+01 c.70.1.1 72510 1id0A 152 2.67e+01 d.122.1.3 66111 1wpnA 188 2.67e+01 1dpgA 485 2.73e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1j5xA 342 2.74e+01 c.80.1.1 71591 1ihjA 98 2.76e+01 1pdr b.36.1.1 62382 1q9uA 130 2.79e+01 d.129.7.1 96314 1h7eA 245 2.81e+01 c.68.1.13 60717 1tqgA 105 2.82e+01 a.24.10.3 107224 1b8aA 438 2.83e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1cydA 244 2.84e+01 1cydA c.2.1.2 29825 1fm0D 81 2.85e+01 1fmaD d.15.3.1 37642 1t6cA 315 2.92e+01 c.55.1.8,c.55.1.8 106558,106559 1gudA 288 2.95e+01 c.93.1.1 83326 1vjpA 394 2.98e+01 c.2.1.3,d.81.1.3 100828,100829 1km4A 247 2.99e+01 c.1.2.3 72740 1ekqA 272 3.03e+01 1c3qA c.72.1.2 34941 1uv7A 110 3.07e+01 d.67.4.1 100040 1h75A 81 3.07e+01 1h75A c.47.1.1 60716 1nvmB 312 3.12e+01 c.2.1.3,d.81.1.1 86251,86252 1ceo 343 3.19e+01 1ceo c.1.8.3 28808 1vmeA 410 3.22e+01 c.23.5.1,d.157.1.3 108893,108894 1d3gA 367 3.25e+01 1d3gA c.1.4.1 28600 1pyfA 312 3.27e+01 c.1.7.1 95334 1eziA 228 3.31e+01 1eyrA c.68.1.13 34512 1dkuA 317 3.32e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1e8gA 560 3.33e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1cnzA 363 3.34e+01 1cnzA c.77.1.1 35061 1ursA 402 3.35e+01 c.94.1.1 99833 1sz7A 200 3.45e+01 1js1X 324 3.46e+01 c.78.1.1,c.78.1.1 71834,71835 1ixkA 315 3.50e+01 c.66.1.38 90716 1gr0A 367 3.56e+01 c.2.1.3,d.81.1.3 70379,70380 1dcs 311 3.58e+01 1dcs b.82.2.1 28124 1lucA 355 3.59e+01 1lucA c.1.16.1 29547 1mixA 206 3.62e+01 a.11.2.1,b.55.1.5 79166,79167 1o97C 264 3.64e+01 c.26.2.3 81232 1h3qA 140 3.65e+01 d.110.4.3 76652 1s99A 200 3.68e+01 1ff9A 450 3.70e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1m1nA 491 3.74e+01 c.92.2.3 78417 1ws8A 109 3.76e+01 1t1jA 125 3.77e+01 c.137.1.1 106249 1hrhA 136 3.89e+01 1rthA c.55.3.1 33577 1ii5A 233 3.94e+01 c.94.1.1 62412 1e4iA 447 3.94e+01 1e70M c.1.8.4 59225 1npyA 271 3.97e+01 c.2.1.7,c.58.1.5 85995,85996 1rv9A 259 3.98e+01 d.194.1.2 105105 1g5aA 628 4.03e+01 b.71.1.1,c.1.8.1 65152,65153 1g87A 614 4.05e+01 a.102.1.2,b.2.2.2 83275,83276 1vl2A 421 4.05e+01 c.26.2.1,d.210.1.1 108708,108709 1sg6A 393 4.11e+01 e.22.1.1 105522 1i39A 225 4.15e+01 1ekeA c.55.3.1 61585 1efyA 350 4.17e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1c7sA 858 4.17e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1ii7A 333 4.26e+01 1ii7A d.159.1.4 62415 1yc9A 442 4.31e+01 1f0kA 364 4.33e+01 1f0kA c.87.1.2 35465 1dqaA 467 4.39e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1eswA 500 4.42e+01 1cwyA c.1.8.1 59500 1pa7A 130 4.49e+01 a.40.1.1 94410 1w6uA 302 4.50e+01 1hyeA 313 4.52e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1b24A 188 4.58e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1eceA 358 4.63e+01 1eceA c.1.8.3 28813 1j3bA 529 4.65e+01 c.91.1.1,c.109.1.1 77071,77072 1x7yB 342 4.65e+01 1nofA 383 4.67e+01 b.71.1.2,c.1.8.3 92020,92021 1kwgA 645 4.70e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1wy2A 351 4.71e+01 1dqwA 267 4.73e+01 1dqwA c.1.2.3 28551 8abp 306 4.73e+01 8abp c.93.1.1 35647 1oboA 169 4.73e+01 c.23.5.1 86776 1eumA 165 4.76e+01 1eumA a.25.1.1 59507 1uuqA 440 4.78e+01 c.1.8.3 100015 1y8aA 332 4.79e+01 1pbyB 337 4.80e+01 b.69.2.2 94422 1evlA 401 4.83e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1vjoA 393 4.84e+01 c.67.1.3 100827 1xttA 216 4.87e+01 1hjsA 332 4.88e+01 c.1.8.3 83492 1b67A 68 4.92e+01 1a7w a.22.1.2 16474 1iirA 415 4.93e+01 1iirA c.87.1.5 62453 1ihuA 589 4.96e+01 c.37.1.10,c.37.1.10 62394,62395 1vhwA 253 5.12e+01 c.56.2.1 100706 1h4pA 408 5.16e+01 c.1.8.3 90617 1r6xA 395 5.18e+01 b.122.1.3,c.26.1.5 97167,97168 1es9A 232 5.20e+01 1wab c.23.10.3 31340 1ujpA 271 5.25e+01 c.1.2.4 99462 1qlwA 328 5.25e+01 1qlwA c.69.1.15 34722 1amm 174 5.31e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1dugA 234 5.32e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1d3vA 323 5.33e+01 1d3vA c.42.1.1 32559 1vpdA 299 5.35e+01 1qwnA 1045 5.35e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1lqtA 456 5.40e+01 c.3.1.1,c.4.1.1 74198,74199 1nu0A 138 5.43e+01 c.55.3.8 92165 1sqgA 429 5.44e+01 a.79.1.3,c.66.1.38 105912,105913 1efvB 255 5.44e+01 1efvB c.26.2.3 31634 1io0A 185 5.45e+01 c.10.1.1 76753 1cg2A 393 5.45e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1s2oA 244 5.45e+01 1uuyA 167 5.47e+01 c.57.1.1 108059 2lisA 136 5.48e+01 1lis a.19.1.1 16405 1kveB 77 5.60e+01 1kveB 1vsrA 136 5.60e+01 1vsrA c.52.1.15 33332 1goiA 499 5.62e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1vfjA 116 5.74e+01 1ryiA 382 5.78e+01 1ct5A 256 5.79e+01 1ct5A c.1.6.2 28663 1a8s 273 5.83e+01 1brt c.69.1.12 34710 1of8A 370 5.88e+01 c.1.10.4 92819 1p1jA 533 5.89e+01 c.2.1.3,d.81.1.3 87687,87688 1rm6A 769 5.90e+01 2bjiA 277 5.91e+01 1ryqA 69 5.91e+01 g.41.9.3 105126 1vimA 200 5.93e+01 c.80.1.3 100758 1ls1A 295 5.99e+01 a.24.13.1,c.37.1.10 78170,78171 1eb6A 177 5.99e+01 d.92.1.12 64895 1h8eA 510 6.04e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1ddwA 120 6.05e+01 1evhA b.55.1.4 27001 1m4lA 307 6.05e+01 c.56.5.1 78604 1aua 296 6.19e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1g8lA 411 6.22e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1jqnA 883 6.23e+01 c.1.12.3 77159 1muwA 386 6.23e+01 c.1.15.3 79495 2pth 193 6.29e+01 2pth c.56.3.1 33793 1atg 231 6.30e+01 1atg c.94.1.1 35834 1e3oC 160 6.31e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1xzoA 174 6.31e+01 1h7sA 365 6.32e+01 d.14.1.3,d.122.1.2 65705,65706 1xx1A 285 6.34e+01 1jakA 512 6.36e+01 c.1.8.6,d.92.2.1 66472,66473 1k3yA 221 6.38e+01 a.45.1.1,c.47.1.5 77245,77246 1e6cA 173 6.49e+01 1shkA c.37.1.2 59296 1rmwA 212 6.51e+01 1f1eA 154 6.55e+01 a.22.1.2 64927 1go4A 205 6.56e+01 d.135.1.1 70292 1oi7A 288 6.57e+01 c.2.1.8,c.23.4.1 87049,87050 1j4aA 333 6.68e+01 c.2.1.4,c.23.12.1 71502,71503 1q1fA 151 6.72e+01 a.1.1.2 104476 1tfzA 424 6.75e+01 d.32.1.3,d.32.1.3 106886,106887 1a3c 181 6.80e+01 1a3c c.61.1.1 34095 1eq2A 310 6.80e+01 1eq2A c.2.1.2 29814 1iz6A 138 6.89e+01 b.34.5.2,b.40.4.5 76976,76977 1izmA 184 6.89e+01 a.199.1.1 90725 1x82A 190 6.95e+01 1rk6A 496 6.98e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1ituA 369 7.04e+01 c.1.9.7 71423 1mun 225 7.04e+01 1mun a.96.1.2 18744 1o66A 275 7.12e+01 c.1.12.8 92547 1dusA 194 7.23e+01 1dusA c.66.1.4 34182 1o4vA 183 7.25e+01 c.23.8.1 86628 1jflA 228 7.26e+01 c.78.2.1,c.78.2.1 71656,71657 1tjyA 316 7.33e+01 c.93.1.1 107062 1p1mA 406 7.42e+01 b.92.1.4,c.1.9.9 87696,87697 1ev7A 317 7.54e+01 1ev7B c.52.1.9 33315 1x91A 153 7.62e+01 1rkuA 206 7.69e+01 c.108.1.11 97627 1fxkC 133 7.71e+01 1fxkC a.2.5.1 15702 1usgA 346 7.73e+01 c.93.1.1 99864 1u55A 188 7.75e+01 d.278.1.1 107677 1bkrA 109 7.77e+01 1bkrA a.40.1.1 17394 1gveA 327 7.83e+01 c.1.7.1 70597 1b43A 340 7.92e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1nrjB 218 7.92e+01 c.37.1.8 86125 1e2wA 251 7.94e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1jvr 137 7.95e+01 1jvr a.61.1.2 18132 1vl1A 232 8.09e+01 c.124.1.1 108707 1dysA 348 8.12e+01 1bvwA c.6.1.1 30669 1owlA 484 8.16e+01 a.99.1.1,c.28.1.1 93647,93648 1dd9A 338 8.18e+01 1dd9A e.13.1.1 43254 1csh 435 8.22e+01 1csh a.103.1.1 18880 1huxA 270 8.23e+01 1huxA c.55.1.5 61278 1hfeL 421 8.32e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1vc4A 254 8.33e+01 c.1.2.4 100557 1gp6A 356 8.38e+01 b.82.2.1 65441 1c1dA 355 8.39e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 1rhcA 330 8.45e+01 c.1.16.3 97468 1doi 128 8.51e+01 1awd d.15.4.1 37676 1ctj 89 8.55e+01 1ctj a.3.1.1 15798 1e19A 314 8.61e+01 1b7bA c.73.1.1 34967 1dofA 403 8.62e+01 1c3cA a.127.1.1 19429 1ewfA 456 8.63e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 2gnxA 365 8.66e+01 1ek9A 428 8.88e+01 1ek9A f.5.1.1 43809 1evsA 187 8.89e+01 1evsA a.26.1.1 16845 1ga6A 372 8.93e+01 1ga1A c.41.1.2 32556 1gqeA 365 8.99e+01 e.38.1.1 70351