# List of top-scoring protein chains for T0296.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o20A 427 5.24e-02 c.82.1.1 86556 1ou5A 448 7.20e-01 a.173.1.1,d.218.1.4 87445,87446 1zkdA 387 9.01e-01 1ubeA 349 1.40e+00 c.37.1.11,d.48.1.1 88412,88413 1mjhA 162 3.07e+00 1mjhA c.26.2.4 31639 2c2aA 258 3.67e+00 1g0dA 695 4.48e+00 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 2bgkA 278 4.62e+00 1rqlA 267 6.06e+00 c.108.1.3 97750 1fezA 256 6.36e+00 1fezA c.108.1.3 43343 1rdfA 267 7.02e+00 c.108.1.3 104884 1g19A 350 7.78e+00 2reb c.37.1.11,d.48.1.1 32284,38770 1vkzA 412 7.84e+00 b.84.2.1,c.30.1.1,d.142.1.2 108698,108699,108700 1kyzA 365 8.45e+00 a.4.5.29,c.66.1.12 73312,73313 1bxkA 355 8.65e+00 1bxkA c.2.1.2 29803 1xnaA 183 9.12e+00 1xnaA b.18.1.8 23773 1xfoA 357 9.55e+00 1swvA 267 9.62e+00 1hg3A 225 9.78e+00 1hg3A c.1.1.1 61025 1z8dA 842 9.80e+00 1y0yA 353 1.04e+01 1ojnA 731 1.16e+01 a.102.3.2,b.24.1.1,b.30.5.2 93137,93138,93139 1lxkA 721 1.16e+01 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1ojoA 731 1.16e+01 a.102.3.2,b.24.1.1,b.30.5.2 93140,93141,93142 1ojmA 729 1.19e+01 a.102.3.2,b.24.1.1,b.30.5.2 93134,93135,93136 1eguA 731 1.19e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1cv2A 296 1.29e+01 1bn6A c.69.1.8 34680 1g42A 296 1.30e+01 c.69.1.8 65139 1mj5A 302 1.30e+01 c.69.1.8 91285 1iz7A 295 1.30e+01 c.69.1.8 76982 1n7oA 721 1.33e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 2cfxA 144 1.55e+01 1n7qA 721 1.62e+01 a.102.3.2,b.24.1.1,b.30.5.2 80265,80266,80267 1n7rA 721 1.80e+01 a.102.3.2,b.24.1.1,b.30.5.2 80268,80269,80270 2bkxA 242 1.84e+01 1n7nA 721 1.85e+01 a.102.3.2,b.24.1.1,b.30.5.2 80256,80257,80258 1b0aA 288 1.90e+01 1a4iA c.2.1.7,c.58.1.2 30286,33934 1n7pA 721 2.07e+01 a.102.3.2,b.24.1.1,b.30.5.2 80262,80263,80264 1o60A 292 2.22e+01 c.1.10.4 92532 1f76A 336 2.36e+01 c.1.4.1 76160 1u2zA 433 2.43e+01 c.66.1.31 107626 1o6vA 466 2.50e+01 b.1.18.15,c.10.2.1 81099,81100 1tozA 116 2.56e+01 1xoiA 846 2.61e+01 1fc0A 846 2.62e+01 1a8i c.87.1.4 35473 1l5sA 847 2.62e+01 c.87.1.4 77716 1g7uA 284 2.66e+01 1d9eA c.1.10.4 60334 2ad9A 119 2.71e+01 1phwA 284 2.72e+01 c.1.10.4 104155 1obdA 306 2.82e+01 d.143.1.1 86767 1sjqA 105 2.83e+01 d.58.7.1 105660 1upaA 573 2.98e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 2a2cA 478 3.05e+01 1j0aA 325 3.22e+01 c.79.1.1 83871 1fuoA 467 3.33e+01 1furA a.127.1.1 19411 1fuqA 472 3.34e+01 1furA a.127.1.1 19405 1smqA 399 3.35e+01 a.25.1.2 105766 1jk0A 419 3.42e+01 a.25.1.2 63142 2ey4A 333 3.69e+01 1rajA 393 3.84e+01 e.8.1.4 104881 1mdp1 363 3.86e+01 4mbp 1uqrA 154 3.91e+01 c.23.13.1 99779 1qo8A 566 4.21e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1ijqA 316 4.42e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1zbqA 327 4.50e+01 2beiA 170 4.50e+01 1bmv1 198 4.53e+01 1bmv1 1dq3A 454 4.53e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1yxoA 328 4.60e+01 2ad1A 298 4.63e+01 1jsqA 582 4.64e+01 i.13.1.1 63270 1pgl1 185 4.68e+01 2fusA 467 4.69e+01 1furA a.127.1.1 19409 1vk3A 615 4.79e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1gtzA 156 4.80e+01 c.23.13.1 70539 1gu1A 156 4.80e+01 c.23.13.1 70563 2bt4A 157 4.81e+01 1b24A 188 4.91e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 2c07A 285 4.91e+01 1e4yA 214 5.09e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1wu6A 396 5.24e+01 1jsmA 325 5.29e+01 b.19.1.2 63264 1e4vA 214 5.32e+01 1zin c.37.1.1,g.41.2.1 31903,45183 1noj 842 5.33e+01 1a8i c.87.1.4 35479 1akeA 214 5.48e+01 1zin c.37.1.1,g.41.2.1 31905,45185 2a5hA 416 5.54e+01 2c1vA 338 5.56e+01 2c5wB 385 5.63e+01 2b1xA 470 5.64e+01 1y6zA 263 5.70e+01 1yvoA 172 6.02e+01 1zq9A 285 6.24e+01 2bl1A 172 6.25e+01 1j1nA 492 6.63e+01 c.94.1.1 83978 1xc7A 842 6.66e+01 1abbA 828 6.66e+01 1a8i c.87.1.4 35536 1c50A 830 6.67e+01 1a8i c.87.1.4 35512 1h5uA 842 6.67e+01 1a8i c.87.1.4 60655 1vgpA 373 6.86e+01 1b63A 333 6.89e+01 1b63A d.14.1.3,d.122.1.2 37566,41107 1dxlA 470 6.89e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30585,30586,40214 2c6wB 384 6.94e+01 2fclA 169 6.96e+01 2ewrA 170 6.97e+01 2g0tA 350 6.98e+01 1gefA 123 7.06e+01 1gefA c.52.1.18 60465 1nd4A 264 7.07e+01 d.144.1.6 91815 1eljA 381 7.34e+01 4mbp c.94.1.1 35791 1bknA 352 7.49e+01 1b63A d.14.1.3,d.122.1.2 37568,41109 2c0jA 161 7.54e+01 1b62A 349 7.58e+01 1b63A d.14.1.3,d.122.1.2 37567,41108 1b6g 310 7.63e+01 1b6g c.69.1.8 34661 1ede 310 7.63e+01 1b6g c.69.1.8 34662 1jx2B 315 7.66e+01 c.37.1.8 67404 1p5zB 263 7.70e+01 c.37.1.1 87815 1o70A 324 7.76e+01 b.118.1.1,b.118.1.1 81115,81116 1u6mA 199 7.80e+01 1pnsC 206 7.81e+01 i.1.1.1 88170 2boqA 331 7.85e+01 1sflA 238 7.94e+01 1i60A 278 8.30e+01 c.1.15.4 71118 1bez 310 8.31e+01 1b6g c.69.1.8 34666 1xtaA 221 8.43e+01 2d13A 227 8.46e+01 1vpgA 192 8.49e+01 1nhjA 333 8.58e+01 d.14.1.3,d.122.1.2 85720,85721 2fnqA 699 8.65e+01 1jhhA 202 8.67e+01 a.4.5.2,b.87.1.1 63060,63061 1wc9A 165 8.74e+01 2b7yA 182 8.79e+01 1gq6A 313 8.86e+01 c.42.1.1 70341 1dhs 361 8.87e+01 1dhs c.31.1.1 31727 1rlzA 369 8.92e+01 c.31.1.1 104989