# List of top-scoring protein chains for T0296.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o20A 427 6.92e-02 c.82.1.1 86556 1o5oA 221 1.91e+00 c.61.1.1 92509 1xnaA 183 2.09e+00 1xnaA b.18.1.8 23773 1s3gA 217 3.30e+00 c.37.1.1,g.41.2.1 98433,98434 1mjhA 162 4.50e+00 1mjhA c.26.2.4 31639 1obdA 306 6.41e+00 d.143.1.1 86767 1uqrA 154 8.79e+00 c.23.13.1 99779 1gwjA 377 1.02e+01 c.1.4.1 70671 1euzA 419 1.04e+01 1k89 c.2.1.7,c.58.1.1 59513,59514 1dhs 361 1.17e+01 1dhs c.31.1.1 31727 1rlzA 369 1.17e+01 c.31.1.1 104989 1svzA 247 1.21e+01 1yxoA 328 1.21e+01 2fnaA 357 1.21e+01 1e4yA 214 1.21e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1e4vA 214 1.24e+01 1zin c.37.1.1,g.41.2.1 31903,45183 1bvuA 418 1.28e+01 1hwyA c.2.1.7,c.58.1.1 30226,33874 1ib6A 312 1.31e+01 c.2.1.5,d.162.1.1 62146,62147 1smkA 326 1.33e+01 1pdo 135 1.33e+01 1pdo c.54.1.1 33376 1vrcA 136 1.33e+01 1sevA 362 1.36e+01 1akeA 214 1.36e+01 1zin c.37.1.1,g.41.2.1 31905,45185 1sz7A 200 1.46e+01 1tv8A 340 1.52e+01 c.1.28.3 107352 1bxkA 355 1.56e+01 1bxkA c.2.1.2 29803 2bsxA 253 1.60e+01 1q7zA 566 1.62e+01 c.1.21.2,c.1.26.1 96090,96091 1sq6A 253 1.64e+01 c.56.2.1 98964 2ljrA 244 1.66e+01 1ljrA a.45.1.1,c.47.1.5 17709,33003 1q1gA 276 1.68e+01 c.56.2.1 95574 1vpgA 192 1.75e+01 1wc8A 180 1.83e+01 2cmd 312 1.93e+01 2cmd c.2.1.5,d.162.1.1 30135,42102 1xfoA 357 2.00e+01 2c0jA 161 2.02e+01 1mv8A 436 2.10e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1y0yA 353 2.17e+01 2cf2C 342 2.32e+01 1fnuA 221 2.35e+01 3seb b.40.2.2,d.15.6.1 25212,37801 1xvyA 309 2.38e+01 1wc9A 165 2.39e+01 1aoa 275 2.48e+01 1aoa a.40.1.1,a.40.1.1 17396,17397 1wkjA 137 2.57e+01 1umyA 407 2.57e+01 c.1.26.1 99635 1hjqA 332 2.64e+01 c.1.8.3 83491 1yspA 181 2.75e+01 1vqe 87 2.93e+01 1gvp b.40.4.7 25380 1lt8A 406 2.96e+01 c.1.26.1 78186 1hf2A 210 2.98e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1k7cA 233 3.04e+01 c.23.10.4 68267 1vqc 87 3.09e+01 1gvp b.40.4.7 25378 1z6tA 591 3.09e+01 1ha5A 218 3.11e+01 b.40.2.2,d.15.6.1 70927,70928 1y6zA 263 3.13e+01 1vqd 87 3.24e+01 1gvp b.40.4.7 25375 1vqf 87 3.28e+01 1gvp b.40.4.7 25372 1v5vA 401 3.33e+01 1dts 221 3.38e+01 1byi c.37.1.10 32200 1hl2A 297 3.39e+01 c.1.10.1 83581 1gesA 450 3.78e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1lfpA 249 3.86e+01 e.39.1.1 73885 1oa4A 222 3.94e+01 b.29.1.11 86731 1jmg 316 4.12e+01 1bkpA d.117.1.1 41008 1vqj 87 4.17e+01 1gvp b.40.4.7 25374 2cwxA 430 4.35e+01 1ae2 87 4.56e+01 1gvp b.40.4.7 25382 1mldA 314 4.62e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1ezfA 340 4.69e+01 1ezfA a.128.1.2 19440 1u6mA 199 4.70e+01 1gtzA 156 4.71e+01 c.23.13.1 70539 1gu1A 156 4.83e+01 c.23.13.1 70563 2bt4A 157 4.83e+01 1mpyA 307 4.83e+01 1mpyA d.32.1.3,d.32.1.3 38508,38509 1efpA 307 4.84e+01 1efvA c.26.2.3,c.31.1.2 31635,31729 1cv2A 296 4.88e+01 1bn6A c.69.1.8 34680 1g42A 296 4.88e+01 c.69.1.8 65139 2a8xA 464 4.89e+01 1mj5A 302 4.92e+01 c.69.1.8 91285 1iz7A 295 4.95e+01 c.69.1.8 76982 1i8tA 367 5.04e+01 c.4.1.3,d.16.1.7 66094,66095 2anuA 255 5.05e+01 1rdfA 267 5.20e+01 c.108.1.3 104884 1pv5A 264 5.24e+01 d.251.1.1 95150 1t4mA 181 5.30e+01 1m56C 266 5.37e+01 f.25.1.1 74474 1ispA 181 5.37e+01 c.69.1.18 76778 1gtmA 419 5.39e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1wloA 136 5.39e+01 1vqh 87 5.43e+01 1gvp b.40.4.7 25379 1zhvA 134 5.47e+01 1y7mA 164 5.59e+01 1iryA 156 5.63e+01 d.113.1.1 90690 1j0aA 325 5.66e+01 c.79.1.1 83871 2bwfA 77 5.69e+01 1ijqA 316 5.69e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1im4A 221 5.77e+01 e.8.1.7 62581 1w8kA 447 5.86e+01 1jweA 114 5.88e+01 1b79A a.81.1.1 18455 1zbqA 327 5.89e+01 1glqA 209 5.92e+01 1pgtA a.45.1.1,c.47.1.5 17588,32882 1t2nA 181 5.94e+01 1vqg 87 5.96e+01 1gvp b.40.4.7 25376 1vm6A 228 5.97e+01 c.2.1.3,d.81.1.3 108876,108877 3ranA 216 6.06e+01 1byuA c.37.1.8 32028 1yhaA 87 6.09e+01 1gvp b.40.4.7 25384 1vqi 87 6.10e+01 1gvp b.40.4.7 25373 1unnC 115 6.14e+01 d.240.1.1 99680 1oruA 195 6.23e+01 b.58.1.2 93464 1fdyA 297 6.23e+01 1nal3 c.1.10.1 29071 1n4xH 120 6.52e+01 b.1.1.1 85324 1ou5A 448 6.68e+01 a.173.1.1,d.218.1.4 87445,87446 1y67A 229 6.70e+01 1vjgA 218 6.74e+01 c.23.10.6 100810 1g62A 224 6.80e+01 1g61A d.126.1.1 41128 1rypK 198 6.88e+01 d.153.1.4 41879 1b7fA 168 6.88e+01 1b7fA d.58.7.1,d.58.7.1 39169,39170 1jqnA 883 7.05e+01 c.1.12.3 77159 1uk8A 282 7.11e+01 c.69.1.10 107907 1ae3 86 7.19e+01 1gvp b.40.4.7 25381 1vekA 84 7.20e+01 1cl7H 135 7.24e+01 1gc1H b.1.1.1,b.1.1.2 20419,21389 1s95A 333 7.26e+01 d.159.1.3 105375 2dfdA 342 7.28e+01 2d13A 227 7.45e+01 1gvp 87 7.50e+01 1gvp b.40.4.7 25369 1mjgM 729 7.54e+01 e.26.1.3 79204 2cdyA 231 7.62e+01 1oaoC 729 7.65e+01 e.26.1.3 86746 3sxlA 184 7.74e+01 1b7fA d.58.7.1,d.58.7.1 39173,39174 1gerA 450 7.87e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30477,30478,40170 1k1xA 659 7.88e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1p3jA 217 7.90e+01 c.37.1.1,g.41.2.1 94022,94023 1vorO 114 7.92e+01 1nkwL 116 7.97e+01 i.1.1.2 80597 1fezA 256 7.99e+01 1fezA c.108.1.3 43343 1rqlA 267 8.08e+01 c.108.1.3 97750 2f5gA 133 8.17e+01 1kyzA 365 8.20e+01 a.4.5.29,c.66.1.12 73312,73313 1qg4A 216 8.20e+01 1byuA c.37.1.8 32035 1tsy 316 8.22e+01 1bkpA d.117.1.1 40990 1cf9A 753 8.25e+01 1cf9A c.23.16.3,e.5.1.1 31441,42815 1qf7A 753 8.27e+01 1cf9A c.23.16.3,e.5.1.1 31461,42835 1p7yA 753 8.32e+01 c.23.16.3,e.5.1.1 94321,94322 1jl3A 139 8.33e+01 c.44.1.1 66826 1nal1 297 8.36e+01 1nal3 1p80A 753 8.36e+01 c.23.16.3,e.5.1.1 94337,94338 1p7zA 753 8.36e+01 c.23.16.3,e.5.1.1 94329,94330 1qwsA 753 8.41e+01 c.23.16.3,e.5.1.1 96493,96494 1p81A 753 8.42e+01 c.23.16.3,e.5.1.1 94345,94346 1ggeA 753 8.45e+01 1cf9A c.23.16.3,e.5.1.1 31449,42823 1ggkA 753 8.45e+01 1cf9A c.23.16.3,e.5.1.1 31453,42827 1gg9A 753 8.48e+01 1cf9A c.23.16.3,e.5.1.1 31445,42819 1ggjA 753 8.53e+01 1cf9A c.23.16.3,e.5.1.1 31457,42831 1gghA 753 8.67e+01 1cf9A c.23.16.3,e.5.1.1 31465,42839 1rrpA 204 8.68e+01 1byuA c.37.1.8 32042 1wao1 477 8.77e+01 1qg2A 216 8.81e+01 1byuA c.37.1.8 32034 1i2mA 216 8.82e+01 1byuA c.37.1.8 61568 1swvA 267 8.88e+01 1wu6A 396 8.94e+01 1yhb 87 8.98e+01 1gvp b.40.4.7 25383