# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ufoA 238 1.21e-01 c.69.1.27 99344 1i60A 278 2.09e-01 c.1.15.4 71118 1o9iA 266 2.67e-01 a.25.1.3 92671 1edt 271 4.08e-01 2ebn c.1.8.5 28993 1c0pA 363 5.35e-01 1an9A c.4.1.2,d.16.1.3 30647,37934 1lfpA 249 5.86e-01 e.39.1.1 73885 1uf5A 303 6.20e-01 d.160.1.2 107808 1uk8A 282 7.73e-01 c.69.1.10 107907 1c93A 265 8.62e-01 2ebn c.1.8.5 28998 7odcA 424 1.03e+00 7odcA b.49.2.3,c.1.6.1 26488,28650 1i6pA 220 1.07e+00 1ddzA c.53.2.1 61848 1xszA 356 1.18e+00 1jmvA 141 1.31e+00 c.26.2.4 66897 1thfD 253 1.33e+00 1thfD c.1.2.1 28535 1xzoA 174 1.36e+00 1fzqA 181 1.55e+00 1hurA c.37.1.8 32060 1vyrA 364 1.59e+00 c.1.4.1 108906 12asA 330 1.71e+00 12asA d.104.1.1 40783 1uuqA 440 1.91e+00 c.1.8.3 100015 1h5qA 265 1.93e+00 1cydA c.2.1.2 60643 1sz7A 200 1.99e+00 1g5hA 454 2.19e+00 1g5hA c.51.1.1,d.104.1.1 60270,60271 1f89A 291 2.25e+00 d.160.1.1 64988 1es9A 232 2.45e+00 1wab c.23.10.3 31340 1ezwA 349 2.50e+00 1ezwA c.1.16.3 29558 1eswA 500 2.67e+00 1cwyA c.1.8.1 59500 1jqnA 883 2.73e+00 c.1.12.3 77159 1lucA 355 2.74e+00 1lucA c.1.16.1 29547 1e8gA 560 2.92e+00 1qltA d.58.32.1,d.145.1.1 39455,41718 1fs5A 266 2.98e+00 c.124.1.1 65044 1gtzA 156 2.99e+00 c.23.13.1 70539 1e3oC 160 3.72e+00 1au7A a.4.1.1,a.35.1.1 59197,59198 1bw0A 416 4.41e+00 1bw0A c.67.1.1 34385 1hl2A 297 4.61e+00 c.1.10.1 83581 1gdhA 320 4.85e+00 1gdhA c.2.1.4,c.23.12.1 30095,31355 1izcA 339 5.00e+00 c.1.12.5 83838 1h05A 146 5.00e+00 c.23.13.1 76433 1ct5A 256 5.02e+00 1ct5A c.1.6.2 28663 1j0dA 341 5.35e+00 c.79.1.1 83902 1e6yB 433 5.53e+00 1mroB a.89.1.1,d.58.31.2 18535,39453 1dtdA 303 5.56e+00 1aye c.56.5.1 33823 1b3uA 588 5.73e+00 1b3uA a.118.1.2 19135 1pdo 135 6.01e+00 1pdo c.54.1.1 33376 2tpsA 227 6.23e+00 2tpsA c.1.3.1 28591 1kkoA 413 6.35e+00 c.1.11.2,d.54.1.1 68675,68676 1c02A 166 6.54e+00 1qspA a.24.10.2 16633 1qtwA 285 6.72e+00 1qumA c.1.15.1 29392 1tqgA 105 7.30e+00 a.24.10.3 107224 1lzlA 323 7.51e+00 c.69.1.2 78306 1gudA 288 7.69e+00 c.93.1.1 83326 1k4nA 192 8.62e+00 d.32.1.5 72059 1w8kA 447 8.96e+00 1qd1A 325 1.05e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1pe1A 267 1.08e+01 c.1.10.4 94591 1ql0A 241 1.08e+01 1qaeA d.4.1.2 37139 1gpmA 525 1.09e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1k7cA 233 1.17e+01 c.23.10.4 68267 1dugA 234 1.17e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 2gq1A 332 1.21e+01 1f60A 458 1.22e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1e4yA 214 1.23e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1gs9A 165 1.26e+01 a.24.1.1 83313 1tr9A 341 1.27e+01 1s95A 333 1.35e+01 d.159.1.3 105375 1syyA 346 1.41e+01 a.25.1.2 106126 1nfp 228 1.45e+01 1nfp c.1.16.2 29555 1ib2A 349 1.52e+01 1ib2A a.118.1.8 62141 1vdkA 466 1.53e+01 a.127.1.1 100561 1byi 224 1.55e+01 1byi c.37.1.10 32199 1odmA 331 1.73e+01 b.82.2.1 86875 1cr1A 296 1.75e+01 1cr1A c.37.1.11 32286 1qq9A 284 1.76e+01 1xjo c.56.5.4 33841 1r8sA 164 1.78e+01 c.37.1.8 97247 1ysqA 193 1.80e+01 1vl2A 421 1.83e+01 c.26.2.1,d.210.1.1 108708,108709 1kpf 126 1.87e+01 1kpf d.13.1.1 37507 1hjsA 332 1.88e+01 c.1.8.3 83492 1f74A 293 1.88e+01 1nal3 c.1.10.1 29079 1jae 471 1.91e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1o54A 277 1.92e+01 c.66.1.13 92482 1al3 324 2.02e+01 1al3 c.94.1.1 35835 1a4iA 301 2.02e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1uozA 315 2.04e+01 1e0eA 55 2.06e+01 1wjcA a.4.10.1 59147 1eexG 173 2.08e+01 1dioG a.23.2.1 16490 2dfkA 402 2.11e+01 1pa7A 130 2.11e+01 a.40.1.1 94410 1km4A 247 2.13e+01 c.1.2.3 72740 1cy5A 97 2.13e+01 1cy5A a.77.1.3 18430 1nc5A 373 2.14e+01 a.102.1.6 85548 1xttA 216 2.21e+01 1v30A 124 2.25e+01 1giqA 413 2.37e+01 d.166.1.1,d.166.1.1 76224,76225 2gefA 217 2.51e+01 1ez3A 127 2.54e+01 1dn1B a.47.2.1 17768 1nar 290 2.55e+01 1nar c.1.8.5 28988 1b43A 340 2.56e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1o4vA 183 2.60e+01 c.23.8.1 86628 1fobA 334 2.62e+01 c.1.8.3 83255 1b79A 119 2.67e+01 1b79A a.81.1.1 18451 1goiA 499 2.71e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1sfsA 240 2.71e+01 c.1.8.8 98846 1bolA 222 2.77e+01 1bolA d.124.1.1 41120 1tjyA 316 2.77e+01 c.93.1.1 107062 1dxy 333 2.80e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1e8yA 966 2.80e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1h5wA 309 2.86e+01 e.27.1.1 65635 1uuyA 167 2.88e+01 c.57.1.1 108059 1k3xA 262 3.05e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1us5A 314 3.09e+01 c.94.1.1 99856 1cliA 345 3.11e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 2pth 193 3.14e+01 2pth c.56.3.1 33793 1m1nA 491 3.18e+01 c.92.2.3 78417 1efvB 255 3.20e+01 1efvB c.26.2.3 31634 1ctqA 166 3.28e+01 1ctqA c.37.1.8 31965 1k0wA 231 3.29e+01 c.74.1.1 77220 1j24A 143 3.30e+01 c.52.1.20 84008 1ep3A 311 3.30e+01 2dorA c.1.4.1 28597 1m7yA 435 3.31e+01 c.67.1.4 78761 1j8mF 297 3.38e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1dosA 358 3.42e+01 1dosA c.1.10.2 29175 1tl9A 339 3.47e+01 1d4oA 184 3.48e+01 1d4oA c.31.1.4 31748 1jbwA 428 3.49e+01 c.59.1.2,c.72.2.2 62860,62861 1ogwA 76 3.56e+01 d.15.1.1 87001 1kq6A 141 3.69e+01 d.189.1.1 91020 1vhwA 253 3.78e+01 c.56.2.1 100706 2arcA 164 3.83e+01 2arcA b.82.4.1 28148 1hl9A 449 3.83e+01 b.71.1.3,c.1.8.11 90650,90651 1hc7A 477 3.90e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1gxjA 186 3.94e+01 d.215.1.1 70707 1obdA 306 3.98e+01 d.143.1.1 86767 1edg 380 4.24e+01 1edg c.1.8.3 28807 1fi4A 416 4.24e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1j6oA 268 4.30e+01 c.1.9.12 77088 1ra0A 430 4.51e+01 1gnkA 112 4.55e+01 2pii d.58.5.1 39073 1ls1A 295 4.59e+01 a.24.13.1,c.37.1.10 78170,78171 1e4iA 447 4.68e+01 1e70M c.1.8.4 59225 1swxA 209 4.68e+01 a.224.1.1 106075 1x9iA 302 4.69e+01 1clc 639 4.69e+01 1clc a.102.1.2,b.1.18.2 18835,21872 1ia6A 441 4.75e+01 a.102.1.2 76738 1ydyA 356 4.76e+01 1mdc 133 4.76e+01 1hmt b.60.1.2 27198 1yxyA 234 4.77e+01 1i36A 264 4.81e+01 a.100.1.8,c.2.1.6 71108,71109 1im5A 180 4.88e+01 c.33.1.3 66211 1f6fA 199 5.08e+01 1f6fA a.26.1.1 16839 1hf8A 289 5.08e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1i6lA 328 5.12e+01 c.26.1.1 66041 1afwA 393 5.17e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1eqfA 280 5.17e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1rwzA 245 5.23e+01 d.131.1.2,d.131.1.2 98005,98006 1dleA 298 5.28e+01 1dleA b.47.1.2 26312 1xm3A 264 5.37e+01 1kjwA 295 5.53e+01 b.34.2.1,c.37.1.1 68643,68644 1iq8A 582 5.55e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1w3iA 293 5.57e+01 c.1.10.1 109152 1ja1A 622 5.66e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1vjoA 393 5.69e+01 c.67.1.3 100827 1xfiA 367 5.69e+01 e.50.1.1 109584 16pk 415 5.75e+01 16pk c.86.1.1 35454 1g61A 228 5.81e+01 1g61A d.126.1.1 41126 1ccwA 137 5.83e+01 1be1 c.23.6.1 31238 1sx7A 164 5.85e+01 1e7uA 961 6.07e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1yx1A 264 6.07e+01 1lqtA 456 6.07e+01 c.3.1.1,c.4.1.1 74198,74199 1p1xA 260 6.12e+01 c.1.10.1 104060 1hqkA 154 6.12e+01 c.16.1.1 65902 1hrhA 136 6.13e+01 1rthA c.55.3.1 33577 1af7 274 6.19e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1zin 217 6.23e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1h1dA 221 6.24e+01 c.66.1.1 83452 1dz3A 130 6.26e+01 1dz3A c.23.1.1 31105 1bgc 174 6.27e+01 1bgc a.26.1.1 16822 1iicA 422 6.31e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1k3yA 221 6.35e+01 a.45.1.1,c.47.1.5 77245,77246 1ituA 369 6.41e+01 c.1.9.7 71423 1qw9A 502 6.46e+01 b.71.1.2,c.1.8.3 96466,96467 1cjcA 460 6.58e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1bc5A 269 6.65e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1eo6A 117 6.72e+01 1eo6A d.15.1.3 37609 1pj5A 830 6.73e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1wvfA 520 6.75e+01 1oruA 195 6.87e+01 b.58.1.2 93464 1gvfA 286 6.90e+01 c.1.10.2 70599 1b4pA 217 6.91e+01 a.45.1.1,c.47.1.5 83158,83159 1i5nA 146 6.95e+01 1i5nA a.24.10.3 61805 1uaiA 224 6.95e+01 b.29.1.18 107761 1ijqA 316 6.96e+01 1ijqA b.68.5.1,g.3.11.1 62506,62507 1xe0A 114 7.03e+01 1ebfA 358 7.04e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1j3bA 529 7.12e+01 c.91.1.1,c.109.1.1 77071,77072 1nxuA 333 7.13e+01 c.122.1.1 86389 1ursA 402 7.17e+01 c.94.1.1 99833 1orvA 728 7.17e+01 b.70.3.1,c.69.1.24 87354,87355 1fe0A 68 7.22e+01 1cc8A d.58.17.1 39345 1g2qA 187 7.30e+01 c.61.1.1 65117 1te2A 226 7.50e+01 c.108.1.6 106792 1x7yB 342 7.55e+01 1pfvA 551 7.64e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1qxyA 252 7.70e+01 d.127.1.1 96565 1v5vA 401 7.74e+01 1ihjA 98 7.78e+01 1pdr b.36.1.1 62382 1lqaA 346 7.80e+01 c.1.7.1 84674 1jixA 351 7.85e+01 1c3jA c.87.1.1 63081 1ispA 181 7.88e+01 c.69.1.18 76778 1cb0A 283 7.95e+01 1cb0A c.56.2.1 33790 1mdoA 393 8.05e+01 c.67.1.4 79013 1uxy 340 8.11e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1g8pA 350 8.16e+01 1g8pA c.37.1.20 60376 1aj8A 371 8.20e+01 1aj8A a.103.1.1 18900 1dv1A 449 8.21e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1atg 231 8.28e+01 1atg c.94.1.1 35834 1jadA 251 8.36e+01 h.4.10.1 66461 1a53 247 8.37e+01 1a53 c.1.2.4 28564 1dzkA 157 8.37e+01 1obpA b.60.1.1 27096 1xfkA 336 8.37e+01 1t7rA 269 8.45e+01 a.123.1.1 106635 1i4jA 110 8.56e+01 d.55.1.1 76734 1bkjA 240 8.58e+01 1bkjA d.90.1.1 40243 1fc4A 401 8.62e+01 1bs0A c.67.1.4 59760 1faaA 124 8.63e+01 1erv c.47.1.1 32738 1isiA 265 8.64e+01 e.4.1.1 71394 1ytvA 366 8.78e+01 2fneA 117 8.85e+01 1d3vA 323 8.95e+01 1d3vA c.42.1.1 32559