# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i6pA 220 4.42e-01 1ddzA c.53.2.1 61848 2fnaA 357 6.54e-01 2cbiA 594 7.78e-01 1vjgA 218 9.25e-01 c.23.10.6 100810 1z41A 338 9.33e-01 1to3A 304 1.70e+00 c.1.10.1 107161 1i60A 278 1.77e+00 c.1.15.4 71118 1w0mA 226 1.91e+00 c.1.1.1 109027 1mjhA 162 2.26e+00 1mjhA c.26.2.4 31639 1ep3A 311 3.27e+00 2dorA c.1.4.1 28597 1u9yA 284 3.71e+00 1zhvA 134 3.73e+00 1ispA 181 3.84e+00 c.69.1.18 76778 1i6wA 181 4.32e+00 1i6wA c.69.1.18 61859 2anuA 255 4.38e+00 4pgaA 337 4.53e+00 4pgaA c.88.1.1 35565 1klxA 138 4.55e+00 a.118.18.1 77440 1k7cA 233 4.63e+00 c.23.10.4 68267 1p0kA 349 4.63e+00 c.1.4.1 87648 1deoA 233 4.86e+00 1deoA c.23.10.4 31345 1c93A 265 4.89e+00 2ebn c.1.8.5 28998 1xzoA 174 4.98e+00 1vypX 364 5.17e+00 c.1.4.1 108905 1xszA 356 5.33e+00 1edt 271 5.39e+00 2ebn c.1.8.5 28993 1k1xA 659 6.22e+00 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1eudA 311 6.23e+00 2scuA c.2.1.8,c.23.4.1 30312,31140 1nt2B 258 6.57e+00 a.183.1.1 86150 2gp4A 628 7.15e+00 1gvoA 364 7.24e+00 c.1.4.1 76357 1thfD 253 7.37e+00 1thfD c.1.2.1 28535 2pth 193 7.43e+00 2pth c.56.3.1 33793 1vyrA 364 7.85e+00 c.1.4.1 108906 2fqxA 318 8.24e+00 12asA 330 8.31e+00 12asA d.104.1.1 40783 1zbqA 327 8.52e+00 1jmvA 141 8.71e+00 c.26.2.4 66897 1xfhA 422 9.13e+00 1cy5A 97 9.50e+00 1cy5A a.77.1.3 18430 1tzjA 338 9.51e+00 2abbA 364 1.10e+01 1o5oA 221 1.11e+01 c.61.1.1 92509 1w8kA 447 1.14e+01 1lfpA 249 1.15e+01 e.39.1.1 73885 1sr8A 298 1.16e+01 e.54.1.1 105959 1j6oA 268 1.19e+01 c.1.9.12 77088 1uqrA 154 1.21e+01 c.23.13.1 99779 1h61A 364 1.22e+01 1oyc c.1.4.1 60657 1erzA 303 1.26e+01 1erzA d.160.1.2 59498 1uf5A 303 1.27e+01 d.160.1.2 107808 2chnA 716 1.33e+01 1at3A 247 1.36e+01 1at3A b.57.1.1 27021 1vh7A 265 1.42e+01 c.1.2.1 100646 2a33A 215 1.47e+01 1uuqA 440 1.48e+01 c.1.8.3 100015 1yxyA 234 1.49e+01 1wc9A 169 1.55e+01 2f20A 240 1.58e+01 1tdpA 111 1.59e+01 a.29.8.1 106781 1vpgA 192 1.64e+01 1m5wA 243 1.70e+01 c.1.24.1 84836 1c0pA 363 1.71e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1j0aA 325 1.80e+01 c.79.1.1 83871 1ho1A 242 1.80e+01 1ho1A c.1.24.1 61097 1yarA 233 1.85e+01 1ufoA 238 1.90e+01 c.69.1.27 99344 1mv8A 436 2.06e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1qxoA 388 2.07e+01 d.258.1.1 96539 2bijA 305 2.11e+01 1gz6A 319 2.25e+01 c.2.1.2 76410 1kkoA 413 2.33e+01 c.1.11.2,d.54.1.1 68675,68676 1pdo 135 2.36e+01 1pdo c.54.1.1 33376 1rypJ 204 2.39e+01 d.153.1.4 41878 1tv8A 340 2.40e+01 c.1.28.3 107352 1im8A 244 2.54e+01 c.66.1.14 66212 2aheA 267 2.62e+01 1dfaA 454 2.64e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 1o7jA 327 2.64e+01 c.88.1.1 81140 1ki9A 192 2.67e+01 c.37.1.1 84404 1xkyA 301 2.67e+01 1p0iA 529 2.68e+01 c.69.1.1 93867 1b68A 191 2.68e+01 1nfn a.24.1.1 59076 1sz7A 200 2.69e+01 1f89A 291 2.73e+01 d.160.1.1 64988 1h5qA 265 2.74e+01 1cydA c.2.1.2 60643 2b18A 164 2.80e+01 1gzgA 337 2.86e+01 c.1.10.3 70805 1k4nA 192 2.91e+01 d.32.1.5 72059 1sfjA 238 2.98e+01 1xlqA 106 3.08e+01 2bwfA 77 3.08e+01 1tml 286 3.17e+01 1tml c.6.1.1 30656 2dfkA 402 3.21e+01 1f2dA 341 3.33e+01 1f2dA c.79.1.1 35298 1bxkA 355 3.36e+01 1bxkA c.2.1.2 29803 2b7kA 200 3.39e+01 1r6lA 239 3.42e+01 d.14.1.4,d.101.1.1 97153,97154 1n1fA 159 3.43e+01 a.26.1.3 79803 1yzfA 195 3.44e+01 1fp1D 372 3.50e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1jbbA 153 3.51e+01 1u9aA d.20.1.1 62842 1meoA 209 3.55e+01 c.65.1.1 79035 1lehA 364 3.57e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1vdkA 466 3.60e+01 a.127.1.1 100561 1lh0A 213 3.62e+01 c.61.1.1 73896 1vziA 126 3.64e+01 b.1.13.1,g.41.5.2 108967,108968 2ae0X 345 3.66e+01 2fyxA 143 3.69e+01 1knyA 253 3.69e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 2bodX 286 3.70e+01 1rzrA 332 3.77e+01 2bogX 286 3.81e+01 1sig 339 3.81e+01 1sig a.177.1.1 19068 1lqaA 346 3.85e+01 c.1.7.1 84674 1snyA 267 3.97e+01 c.2.1.2 105833 1ak0 270 3.98e+01 1ak0 a.124.1.2 19345 1xyzA 347 4.03e+01 1taxA c.1.8.3 28804 2f5gA 133 4.10e+01 1j0dA 341 4.13e+01 c.79.1.1 83902 1y7mA 164 4.16e+01 1mkmA 249 4.18e+01 a.4.5.33,d.110.2.2 79242,79243 1vq0A 302 4.28e+01 1php 394 4.32e+01 16pk c.86.1.1 35452 1uptA 171 4.37e+01 c.37.1.8 99767 1b4kA 337 4.43e+01 1b4kA c.1.10.3 29184 1ldg 316 4.54e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1wznA 252 4.58e+01 1xvxA 312 4.59e+01 2gaeA 346 4.61e+01 1scuA 288 4.62e+01 2scuA c.2.1.8,c.23.4.1 30307,31135 2frnA 278 4.63e+01 1nbaA 264 4.69e+01 1nbaA c.33.1.3 31753 1pixA 587 4.71e+01 c.14.1.4 94708 2b6hA 192 4.72e+01 1sflA 238 4.77e+01 2ae2A 260 4.79e+01 1bdb c.2.1.2 29945 1jatA 155 4.85e+01 1u9aA d.20.1.1 62818 1v5vA 401 4.88e+01 1jx2B 315 4.95e+01 c.37.1.8 67404 1izcA 339 5.01e+01 c.1.12.5 83838 2g8lA 299 5.06e+01 1rf6A 427 5.14e+01 d.68.2.2 97366 1iupA 282 5.20e+01 c.69.1.10 76815 1uk8A 282 5.27e+01 c.69.1.10 107907 1xi3A 215 5.29e+01 c.1.3.1 109601 1wmxA 205 5.30e+01 b.18.1.24 109418 1v30A 124 5.36e+01 1r8gA 372 5.39e+01 d.128.1.3 104845 1lt8A 406 5.40e+01 c.1.26.1 78186 1rypI 222 5.49e+01 d.153.1.4 41877 2cb2A 318 5.53e+01 1ql0A 241 5.66e+01 1qaeA d.4.1.2 37139 1r4aA 165 5.68e+01 c.37.1.8 96986 1i0lA 221 5.77e+01 c.61.1.1 71096 1kgnA 329 5.79e+01 a.25.1.2 68584 1zmbA 290 5.87e+01 1vhwA 253 5.87e+01 c.56.2.1 100706 1qtwA 285 5.88e+01 1qumA c.1.15.1 29392 1w3iA 293 5.92e+01 c.1.10.1 109152 1zm8A 259 5.92e+01 1uh5A 329 5.96e+01 c.2.1.2 107840 1oa4A 222 6.06e+01 b.29.1.11 86731 1x42A 232 6.06e+01 1yzgA 179 6.06e+01 1xtoA 311 6.08e+01 1aj8A 371 6.09e+01 1aj8A a.103.1.1 18900 1x3lA 440 6.12e+01 1othA 321 6.15e+01 1othA c.78.1.1,c.78.1.1 35260,35261 1jbkA 195 6.15e+01 c.37.1.20 71631 2bsxA 253 6.15e+01 1eq1A 166 6.16e+01 a.63.1.1 64910 2cxxA 190 6.21e+01 1lrzA 426 6.24e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1vjtA 483 6.33e+01 c.2.1.5,d.162.1.2 100833,100834 2fsqA 243 6.40e+01 2a1vA 144 6.49e+01 1ds1A 324 6.52e+01 1drtA b.82.2.2 28127 2d69A 430 6.55e+01 2d13A 227 6.64e+01 1qgoA 264 6.66e+01 1qgoA c.92.1.2 35596 1fzqA 181 6.71e+01 1hurA c.37.1.8 32060 1o9iA 266 6.72e+01 a.25.1.3 92671 1f74A 293 6.74e+01 1nal3 c.1.10.1 29079 1czsA 160 6.78e+01 1cztA b.18.1.2 23714 1o3yA 166 6.89e+01 c.37.1.8 86618 1hrhA 136 6.90e+01 1rthA c.55.3.1 33577 1yc5A 246 6.92e+01 2fji1 399 7.01e+01 1xnaA 183 7.02e+01 1xnaA b.18.1.8 23773 1i36A 264 7.02e+01 a.100.1.8,c.2.1.6 71108,71109 1uhvA 500 7.04e+01 b.71.1.2,c.1.8.3 99402,99403 1q1gA 276 7.05e+01 c.56.2.1 95574 2a8aA 439 7.09e+01 1tf1A 198 7.09e+01 d.110.2.2 106826 1o7kA 131 7.16e+01 d.189.1.1 81144 1y8cA 246 7.23e+01 2c07A 285 7.26e+01 1ua4A 455 7.28e+01 c.72.1.3 99128 1l7mA 211 7.30e+01 c.108.1.4 73664 2arcA 164 7.37e+01 2arcA b.82.4.1 28148 1l1qA 186 7.60e+01 c.61.1.1 77653 1f4pA 147 7.64e+01 5nul c.23.5.1 59651 2fw2A 260 7.66e+01 1vquA 374 7.68e+01 2cwxA 430 7.68e+01 1zj6A 187 7.74e+01 1k6dA 220 7.75e+01 c.124.1.2 72082 1wywA 230 7.87e+01 2gk3A 256 7.90e+01 1opr 213 7.90e+01 1opr c.61.1.1 34091 1sb8A 352 7.90e+01 c.2.1.2 105410 1fs5A 266 7.95e+01 c.124.1.1 65044 1xkqA 280 7.99e+01 1rljA 139 7.99e+01 c.23.5.7 104983 1sziA 247 7.99e+01 a.24.23.1 106159 1uptC 170 8.04e+01 c.37.1.8 99769 1cztA 160 8.07e+01 1cztA b.18.1.2 23715 1kshA 186 8.14e+01 c.37.1.8 72914 1rypG 244 8.17e+01 d.153.1.4 41938 1nzeA 149 8.19e+01 a.24.18.1 92374 1gq6A 313 8.25e+01 c.42.1.1 70341 1fltX 95 8.33e+01 1fltX b.1.1.4 21765 2a5hA 416 8.38e+01 1vykA 149 8.41e+01 1kpgA 287 8.51e+01 c.66.1.18 68735 1hf8A 289 8.61e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 2b8eA 273 8.66e+01 1jkvA 266 8.73e+01 a.25.1.3 71719 1h2cA 140 8.79e+01 b.31.1.1 83462 1mr3F 181 8.84e+01 c.37.1.8 79422 1eo9B 241 8.86e+01 3pchM b.3.6.1 22826 2exnA 136 8.87e+01 1giqA 413 8.91e+01 d.166.1.1,d.166.1.1 76224,76225 1o60A 292 8.94e+01 c.1.10.4 92532 1xp3A 307 8.99e+01