# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1np7A 489 6.74e-01 a.99.1.1,c.28.1.1 80677,80678 1om4A 422 1.99e+00 d.174.1.1 87067 1mmvB 419 2.27e+00 d.174.1.1 91318 1t9xA 1049 2.45e+00 1tv8A 340 3.03e+00 c.1.28.3 107352 1pfkA 320 3.11e+00 3pfk c.89.1.1 35575 2pfkA 320 3.15e+00 3pfk c.89.1.1 35577 1httA 423 4.47e+00 1adjA c.51.1.1,d.104.1.1 33178,40727 1dv1A 449 6.75e+00 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1zxxA 319 8.44e+00 6pfkA 319 9.33e+00 3pfk c.89.1.1 35583 1iqrA 420 9.40e+00 a.99.1.1,c.28.1.1 66275,66276 1w2yA 229 9.46e+00 a.204.1.1 109140 1j27A 102 1.04e+01 d.58.50.1 90778 2a6hD 1524 1.06e+01 1ex1A 605 1.08e+01 1ex1A c.1.8.7,c.23.11.1 29013,31347 1dv2A 452 1.09e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1iexA 605 1.11e+01 c.1.8.7,c.23.11.1 66127,66128 1mli 96 1.13e+01 1mli d.58.4.1 39070 1t9mA 214 1.25e+01 1kmnD 424 1.25e+01 1adjA c.51.1.1,d.104.1.1 33185,40734 1iwgA 1053 1.33e+01 d.58.44.1,d.58.44.1,d.58.44.1,d.58.44.1,d.225.1.1,d.225.1.1,f.35.1.1,f.35.1.1 76874,76875,76876,76877,76878,76879,76880,76881 1n9lA 109 1.37e+01 d.110.3.6 85468 1amuA 563 1.45e+01 1amuA e.23.1.1 43351 5fbpA 335 1.53e+01 1frpA e.7.1.1 42873 1x38A 602 1.54e+01 1kvdB 77 1.55e+01 1kveB 2gw6A 123 1.64e+01 1ma3A 253 1.70e+01 c.31.1.5 78883 1kveB 77 1.87e+01 1kveB 2sxl 88 1.95e+01 1b7fA d.58.7.1 39179 1g5qA 181 1.97e+01 1g5qA c.34.1.1 60288 1kmmA 424 2.04e+01 1adjA c.51.1.1,d.104.1.1 33174,40723 1zu4A 320 2.06e+01 1w6kA 732 2.08e+01 1b4kA 337 2.08e+01 1b4kA c.1.10.3 29184 1gzgA 337 2.21e+01 c.1.10.3 70805 1m7vA 363 2.21e+01 d.174.1.1 78748 1jfaA 374 2.24e+01 a.128.1.5 66622 3pfk 319 2.33e+01 3pfk c.89.1.1 35581 1necA 216 2.36e+01 1vfrA d.90.1.1 40249 4pfk 319 2.44e+01 3pfk c.89.1.1 35582 1b67A 68 2.48e+01 1a7w a.22.1.2 16474 2a3qA 170 2.52e+01 1elpA 173 2.55e+01 1amm b.11.1.1,b.11.1.1 23596,23597 2dorA 311 2.62e+01 2dorA c.1.4.1 28593 1hta 69 2.66e+01 1a7w a.22.1.2 16476 2bjvA 265 2.69e+01 2aelA 374 2.73e+01 1wz3A 96 2.75e+01 1itwA 741 2.80e+01 c.77.1.2 76793 1iae 200 2.81e+01 1iae d.92.1.8 40311 1uw4B 248 2.82e+01 a.118.1.14 100072 1a45 173 2.95e+01 1amm b.11.1.1,b.11.1.1 23602,23603 1kz8A 337 3.02e+01 e.7.1.1 77633 1a0eA 443 3.35e+01 1a0cA c.1.15.3 29537 1dorA 311 3.37e+01 2dorA c.1.4.1 28595 1ast 200 3.37e+01 1iae d.92.1.8 40310 1iab 200 3.37e+01 1iae d.92.1.8 40312 2gq1A 332 3.49e+01 1a90 108 3.51e+01 1cewI d.17.1.2 38001 1g63A 181 3.53e+01 1g5qA c.34.1.1 60299 1oj6A 151 3.62e+01 a.1.1.2 93088 2f6rA 281 3.69e+01 1li5A 461 3.70e+01 a.27.1.1,c.26.1.1 73912,73913 2cu3A 64 3.90e+01 1d6jA 211 3.93e+01 1d6jA c.37.1.4 31940 1j3bA 529 3.97e+01 c.91.1.1,c.109.1.1 77071,77072 1zxcA 263 3.99e+01 1bkcA 255 4.04e+01 1bkcA d.92.1.10 40331 1vhrA 184 4.10e+01 1vhrA c.45.1.1 32651 2bvyA 475 4.35e+01 1uwfA 158 4.42e+01 1q1fA 151 4.49e+01 a.1.1.2 104476 1oyeA 1049 4.53e+01 d.58.44.1,d.58.44.1,d.58.44.1,d.58.44.1,d.225.1.1,d.225.1.1,f.35.1.1,f.35.1.1 87587,87588,87589,87590,87591,87592,87593,87594 1gs5A 258 4.60e+01 c.73.1.2 70395 1fpkA 335 4.65e+01 1frpA e.7.1.1 42930 1ld4A 264 4.65e+01 i.6.1.1 77886 1pysA 350 4.69e+01 1pysA d.104.1.1 40775 1bkcE 256 4.70e+01 1bkcA d.92.1.10 40333 104lA 166 4.71e+01 1l92 d.2.1.3 36969 1wudA 89 4.98e+01 1zirA 173 4.99e+01 1nuyA 337 5.00e+01 e.7.1.1 86213 1tg6A 277 5.14e+01 1zzmA 259 5.32e+01 1dvpA 220 5.32e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1w5qA 337 5.42e+01 1frpA 335 5.59e+01 1frpA e.7.1.1 42875 1tr7A 164 5.61e+01 1ncx 162 5.81e+01 1ncx a.39.1.5 17222 1w5nA 337 5.85e+01 1r9dA 787 6.08e+01 c.7.1.1 104865 2ddfA 257 6.18e+01 1a0dA 440 6.19e+01 1a0cA c.1.15.3 29533 1wwiA 148 6.19e+01 1li5B 461 6.20e+01 a.27.1.1,c.26.1.1 73914,73915 1h4aX 173 6.26e+01 b.11.1.1,b.11.1.1 83479,83480 1r13A 148 6.52e+01 d.169.1.1,h.1.1.1 96782,96783 1o50A 157 6.54e+01 d.37.1.1,d.37.1.1 92478,92479 1mzgA 146 6.57e+01 d.224.1.1 79696 1m8uA 173 6.61e+01 b.11.1.1,b.11.1.1 91233,91234 1kufA 203 6.88e+01 d.92.1.9 73007 1qunB 279 6.90e+01 b.2.3.2,b.2.3.2 22411,22412 1xl7A 612 6.91e+01 1cewI 108 6.97e+01 1cewI d.17.1.2 37999 1jmsA 381 6.99e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1a7w 69 7.03e+01 1a7w a.22.1.2 16477 1nd7A 374 7.05e+01 d.148.1.1 91817 1qkrA 188 7.10e+01 1qkrA a.24.9.1 16628 1nvpD 108 7.12e+01 a.32.1.1,b.56.1.1 92213,92214 1bxsA 501 7.14e+01 1bpwA c.82.1.1 35357 1shuX 182 7.16e+01 c.62.1.1 98882 1tn4 159 7.16e+01 1ncx a.39.1.5 17248 1bn6A 294 7.20e+01 1bn6A c.69.1.8 34678 1ih7A 903 7.46e+01 1clqA c.55.3.5,e.8.1.1 62375,62376 2fa8A 105 7.48e+01 1dhr 241 7.53e+01 1dhr c.2.1.2 29832 2aeuA 374 7.77e+01 1a5dA 173 7.78e+01 1amm b.11.1.1,b.11.1.1 23614,23615 2fuqA 747 7.88e+01 1yfm 488 7.93e+01 1furA a.127.1.1 19413 1top 162 7.96e+01 1ncx a.39.1.5 17223 1sfjA 238 8.00e+01 1hw7A 255 8.00e+01 1i7fA d.193.1.1 61297 1it2A 146 8.03e+01 a.1.1.2 66365 1sflA 238 8.18e+01 1wu7A 434 8.31e+01 1icrA 217 8.32e+01 1vfrA d.90.1.1 62274 1oen 540 8.39e+01 1ayl c.91.1.1,c.109.1.1 64750,64751 1dzkA 157 8.41e+01 1obpA b.60.1.1 27096 1bkcI 256 8.41e+01 1bkcA d.92.1.10 40334 1cz1A 394 8.55e+01 1cz1A c.1.8.3 28839 1eqcA 394 8.57e+01 1cz1A c.1.8.3 28811 1f6fB 210 8.58e+01 1axiB b.1.2.1,b.1.2.1 22033,22034 1egwA 77 8.63e+01 1mnmA d.88.1.1 40234 3sxlA 184 8.75e+01 1b7fA d.58.7.1,d.58.7.1 39173,39174 1dm0A 287 8.75e+01 1dm0A d.165.1.2 42227 1ev7A 317 8.75e+01 1ev7B c.52.1.9 33315 1n3kA 130 8.76e+01 a.77.1.4 79965 1gpc 218 8.83e+01 1gpc b.40.4.7 25393 1a3yA 149 8.83e+01 1obpA b.60.1.1 27110 2a6hC 1119 8.85e+01