# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bjkA 516 6.18e+00 1o6zA 303 6.89e+00 c.2.1.5,d.162.1.1 81107,81108 1a8s 273 9.59e+00 1brt c.69.1.12 34710 2ajrA 331 1.58e+01 1b4uA 139 1.71e+01 1bouA a.88.1.1 18523 1bouA 139 1.75e+01 1bouA a.88.1.1 18521 1kafA 108 2.37e+01 d.199.1.1 68372 1ak5 503 2.41e+01 1ak5 c.1.5.1 28639 1ykjA 394 2.50e+01 1fgqA 839 2.51e+01 1yge a.119.1.1,b.12.1.1 59826,59827 1pbe 394 2.53e+01 1pbe c.3.1.2,d.16.1.2 30338,37869 1uzbA 516 2.61e+01 c.82.1.1 100220 2phh 394 2.78e+01 1pbe c.3.1.2,d.16.1.2 30353,37884 1bgj 394 2.84e+01 1pbe c.3.1.2,d.16.1.2 30352,37883 1k0iA 394 2.84e+01 c.3.1.2,d.16.1.2 67942,67943 1hg3A 225 2.89e+01 1hg3A c.1.1.1 61025 1ne7A 289 3.20e+01 c.124.1.1 91833 1d9tA 289 3.22e+01 1deaA 1jvnA 555 3.27e+01 c.1.2.1,c.23.16.1 67355,67356 1xrsA 516 3.39e+01 1k9dA 679 3.59e+01 c.1.8.10,d.92.2.2 77292,77293 1zkdA 387 3.71e+01 1b7bA 310 3.78e+01 1b7bA c.73.1.1 34963 1a3yA 149 3.80e+01 1obpA b.60.1.1 27110 1kzhA 555 3.84e+01 c.89.1.1 73361 1jmxB 349 4.27e+01 b.69.2.2 66906 1f8nA 839 4.33e+01 1yge a.119.1.1,b.12.1.1 59703,59704 1va4A 279 4.39e+01 c.69.1.12 108458 1ox6A 555 4.55e+01 c.1.2.1,c.23.16.1 87505,87506 1yge 839 4.77e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1l8nA 679 5.05e+01 c.1.8.10,d.92.2.2 84564,84565 1i06A 180 5.21e+01 1mup b.60.1.1 27131 1jv4A 162 5.27e+01 b.60.1.1 67343 1mup 166 5.28e+01 1mup b.60.1.1 27133 1cj3A 392 5.29e+01 1pbe c.3.1.2,d.16.1.2 30347,37878 1lm4A 194 5.39e+01 d.167.1.1 84626 1eblA 317 5.42e+01 1hn9A c.95.1.2,c.95.1.2 35973,35974 1i05A 180 5.53e+01 1mup b.60.1.1 27130 1df3A 162 5.54e+01 1mup b.60.1.1 27134 1dzkA 157 5.62e+01 1obpA b.60.1.1 27096 1h80A 464 5.65e+01 b.80.1.8 65714 2ez3A 302 5.69e+01 1fs5A 266 5.80e+01 c.124.1.1 65044 1wndA 495 6.11e+01 1tqyA 424 6.21e+01 c.95.1.1,c.95.1.1 107245,107246 1euhA 475 6.31e+01 1euhA c.82.1.1 35369 1zndA 174 6.41e+01 1q7rA 219 6.51e+01 c.23.16.1 96054 2gi3A 476 6.61e+01 1qy1A 174 6.66e+01 b.60.1.1 96568 1y9aA 360 6.78e+01 1me8A 503 6.91e+01 c.1.5.1 79028 1x38A 602 6.96e+01 1hn9A 317 7.08e+01 1hn9A c.95.1.2,c.95.1.2 35977,35978 1hnjA 317 7.36e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1qi6A 475 7.43e+01 1euhA c.82.1.1 35373 1kwkA 645 7.46e+01 b.71.1.1,c.1.8.1,c.23.16.5 77565,77566,77567 1a54A 321 7.54e+01 1ixh c.94.1.1 35763 1k8qA 377 7.54e+01 c.69.1.6 72177 1yveI 524 7.59e+01 1qmgA a.100.1.2,c.2.1.6 18789,30186 1xjeA 644 7.66e+01 1ut9A 609 7.70e+01 a.102.1.2,b.1.18.2 99912,99913 1uxtA 501 7.81e+01 c.82.1.1 108125 1ar1A 558 8.18e+01 2occA f.24.1.1 43618 1eblB 317 8.76e+01 1hn9A c.95.1.2,c.95.1.2 35975,35976 1h8eD 482 8.79e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749