# List of top-scoring protein chains for T0296.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tozA 116 1.13e+00 1gxsA 270 5.18e+00 c.69.1.5 76375 1e8gA 560 7.03e+00 1qltA d.58.32.1,d.145.1.1 39455,41718 1dznA 560 7.56e+00 1qltA d.58.32.1,d.145.1.1 39471,41734 1e0yA 560 7.57e+00 1qltA d.58.32.1,d.145.1.1 39467,41730 1qltA 560 7.75e+00 1qltA d.58.32.1,d.145.1.1 39457,41720 1wp0A 165 9.27e+00 2ggtA 164 9.66e+00 2ad9A 119 1.00e+01 1r1tA 122 1.09e+01 a.4.5.5 104769 1sjqA 105 1.16e+01 d.58.7.1 105660 2g2jA 179 1.24e+01 1wmiA 90 1.34e+01 1w1lA 560 1.76e+01 d.58.32.1,d.145.1.1 109063,109064 1vaoA 560 1.76e+01 1qltA d.58.32.1,d.145.1.1 39461,41724 1w1jA 560 1.77e+01 d.58.32.1,d.145.1.1 109055,109056 1w1mA 560 1.81e+01 d.58.32.1,d.145.1.1 109067,109068 1mzzA 334 1.90e+01 b.6.1.3,b.6.1.3 103850,103851 1xapA 267 1.94e+01 1xdkB 303 2.02e+01 1wviA 257 2.21e+01 1hzmA 154 2.26e+01 c.46.1.1 65975 1hg3A 225 2.46e+01 1hg3A c.1.1.1 61025 1yp6A 174 2.52e+01 1mzyA 333 2.62e+01 b.6.1.3,b.6.1.3 103848,103849 1zv2A 328 2.81e+01 1jv4A 162 2.82e+01 b.60.1.1 67343 1mup 166 2.85e+01 1mup b.60.1.1 27133 1n70A 334 2.86e+01 b.6.1.3,b.6.1.3 103856,103857 1pqpA 371 2.88e+01 c.2.1.3,d.81.1.1 104286,104287 1zndA 174 2.93e+01 1i06A 180 3.02e+01 1mup b.60.1.1 27131 1nwhA 371 3.06e+01 c.2.1.3,d.81.1.1 92233,92234 1ozaA 371 3.13e+01 c.2.1.3,d.81.1.1 104045,104046 1pquA 371 3.29e+01 c.2.1.3,d.81.1.1 104288,104289 1gefA 123 3.32e+01 1gefA c.52.1.18 60465 1nwcA 371 3.33e+01 c.2.1.3,d.81.1.1 92229,92230 2augA 126 3.34e+01 1ps8A 371 3.36e+01 c.2.1.3,d.81.1.1 104304,104305 1w1kA 560 3.44e+01 d.58.32.1,d.145.1.1 109059,109060 1q7rA 219 3.46e+01 c.23.16.1 96054 1pr3A 371 3.52e+01 c.2.1.3,d.81.1.1 104300,104301 1gegA 256 3.55e+01 1ybvA c.2.1.2 29888 2b06A 155 3.55e+01 1kafA 108 3.85e+01 d.199.1.1 68372 1fd0A 235 4.20e+01 a.123.1.1 76164 1fcyA 236 4.22e+01 2lbd a.123.1.1 19282 2belA 283 4.26e+01 1exaA 246 4.27e+01 2lbd a.123.1.1 19285 1xu9A 286 4.30e+01 1q2xA 371 4.31e+01 c.2.1.3,d.81.1.1 104503,104504 1t91A 207 4.32e+01 1pu2A 371 4.33e+01 c.2.1.3,d.81.1.1 104308,104309 1fcdA 401 4.37e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1dzkA 157 4.38e+01 1obpA b.60.1.1 27096 1xg5A 279 4.38e+01 2lbd 267 4.42e+01 2lbd a.123.1.1 19287 1r7yA 283 4.42e+01 c.68.1.9 97214 1dkfB 235 4.48e+01 2lbd a.123.1.1 19281 1a3yA 149 4.49e+01 1obpA b.60.1.1 27110 1lziA 292 4.55e+01 c.68.1.9 74351 1zi5A 293 4.57e+01 1wszA 292 4.58e+01 1zi4A 294 4.60e+01 1zhjA 297 4.65e+01 1sg4A 260 4.70e+01 1md7A 328 4.72e+01 b.47.1.2,g.18.1.1 91243,91244 1md8A 329 4.75e+01 b.47.1.2,g.18.1.1 91245,91246 1gpzA 399 4.88e+01 b.47.1.2,g.18.1.1,g.18.1.1 70302,70303,70304 1v0bA 288 5.19e+01 d.144.1.7 100241 1ob3A 288 5.23e+01 d.144.1.7 92747 1v0oA 288 5.25e+01 d.144.1.7 100243 1fqvB 149 5.70e+01 1fqvD a.157.1.1,d.42.1.1 19262,38666 1vlqA 337 5.74e+01 c.69.1.25 108848 2cu3A 64 5.83e+01 1r75A 141 5.85e+01 b.134.1.1 97189 1ps9A 671 5.90e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1kmmA 424 5.93e+01 1adjA c.51.1.1,d.104.1.1 33174,40723 1pjcA 361 5.94e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1httA 423 6.30e+01 1adjA c.51.1.1,d.104.1.1 33178,40727 2gfhA 260 6.44e+01 1jmxB 349 6.45e+01 b.69.2.2 66906 1fxxA 482 6.51e+01 1fxxA c.55.3.5 33726 2fgyA 542 6.63e+01 1exbA 332 6.73e+01 1qrqA c.1.7.1 28666 2a79A 333 6.82e+01 2fusA 467 6.97e+01 1furA a.127.1.1 19409 1fuoA 467 6.99e+01 1furA a.127.1.1 19411 1fuqA 472 6.99e+01 1furA a.127.1.1 19405 1furA 467 7.01e+01 1furA a.127.1.1 19403 1x3bA 146 7.15e+01 1avbA 226 7.65e+01 1led b.29.1.1 24158 1oxkB 134 7.81e+01 c.23.1.1 93691 1s1mA 545 8.13e+01 c.23.16.1,c.37.1.10 105201,105202 1gakA 141 8.19e+01 1gakA a.19.1.1 16415 1ni4A 365 8.53e+01 c.36.1.11 85728 1e2yA 188 8.75e+01 1qq2A c.47.1.10 59173 1fsgA 233 8.87e+01 1qk3A c.61.1.1 34029