# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2b06A 155 2.98e-01 1dv1A 449 5.72e-01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1tv8A 340 1.21e+00 c.1.28.3 107352 1om4A 422 1.50e+00 d.174.1.1 87067 1np7A 489 1.60e+00 a.99.1.1,c.28.1.1 80677,80678 1u1iA 392 2.45e+00 c.2.1.3,d.81.1.3 107582,107583 1o50A 157 2.99e+00 d.37.1.1,d.37.1.1 92478,92479 1m7vA 363 3.54e+00 d.174.1.1 78748 1amuA 563 3.57e+00 1amuA e.23.1.1 43351 1xneA 113 4.20e+00 1n9lA 109 4.37e+00 d.110.3.6 85468 2a6hC 1119 5.08e+00 1w2yA 229 5.39e+00 a.204.1.1 109140 1xu9A 286 5.45e+00 1rkbA 173 5.84e+00 1vqoE 178 6.10e+00 2gw6A 123 6.14e+00 1xg5A 279 6.44e+00 2bjvA 265 6.57e+00 1qkrA 188 6.81e+00 1qkrA a.24.9.1 16628 1yspA 181 6.81e+00 1xuvA 178 7.80e+00 1g63A 181 8.99e+00 1g5qA c.34.1.1 60299 1zxxA 319 9.37e+00 1pbyB 337 1.12e+01 b.69.2.2 94422 1ylnA 252 1.17e+01 1j3bA 529 1.43e+01 c.91.1.1,c.109.1.1 77071,77072 1x38A 602 1.48e+01 1kveB 77 1.54e+01 1kveB 1sg6A 393 1.59e+01 e.22.1.1 105522 2a3qA 170 1.60e+01 1fm0D 81 1.68e+01 1fmaD d.15.3.1 37642 1b67A 68 1.71e+01 1a7w a.22.1.2 16474 1jmxB 349 1.78e+01 b.69.2.2 66906 1g6aA 271 1.96e+01 1btl e.3.1.1 42704 1oshA 232 2.05e+01 a.123.1.1 93496 2cokA 113 2.11e+01 1jqlB 140 2.11e+01 c.37.1.20 63234 1ev7A 317 2.23e+01 1ev7B c.52.1.9 33315 1ykdA 398 2.24e+01 1iab 200 2.33e+01 1iae d.92.1.8 40312 1bn7A 294 2.39e+01 1bn6A c.69.1.8 34677 2cu3A 64 2.40e+01 1n3kA 130 2.42e+01 a.77.1.4 79965 1msk 331 2.50e+01 1msk d.173.1.1 42495 2fuvA 549 2.61e+01 1go4A 205 2.65e+01 d.135.1.1 70292 1xhcA 367 2.69e+01 1z8sA 146 2.98e+01 1bm9A 122 3.11e+01 1bm9A a.4.5.7 16116 2afwA 329 3.21e+01 1nmeA 146 3.44e+01 c.17.1.1 85874 1g5hA 454 3.45e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1p35A 299 3.49e+01 1p35A b.28.1.1 23925 1wr2A 238 3.63e+01 1vhrA 184 3.64e+01 1vhrA c.45.1.1 32651 1vqvA 306 3.64e+01 1e2wA 251 3.74e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1aua 296 3.78e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1ykiA 217 3.81e+01 2f6rA 281 3.85e+01 1zu4A 320 4.07e+01 1khtA 192 4.14e+01 c.37.1.1 84401 1vizA 240 4.29e+01 c.1.4.1 100784 1iow 306 4.34e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1ayl 541 4.48e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1fkmA 396 4.53e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1c4rA 182 4.55e+01 1c4rA b.29.1.4 24229 1j5sA 463 4.62e+01 c.1.9.8 71580 1hl9A 449 4.63e+01 b.71.1.3,c.1.8.11 90650,90651 1jtvA 327 4.83e+01 c.2.1.2 84230 1upsA 420 4.87e+01 2gaiA 633 4.90e+01 1nofA 383 4.91e+01 b.71.1.2,c.1.8.3 92020,92021 7taa 478 4.94e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1mrg 263 5.11e+01 1mrj d.165.1.1 42183 1jmsA 381 5.12e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1li5A 461 5.14e+01 a.27.1.1,c.26.1.1 73912,73913 1yc9A 442 5.16e+01 2fu4A 83 5.25e+01 1xffA 240 5.32e+01 d.153.1.1 109580 1oe1A 336 5.32e+01 b.6.1.3,b.6.1.3 86891,86892 1bsmA 201 5.46e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1f60B 94 5.48e+01 1b64 d.58.12.1 39307 1senA 164 5.52e+01 c.47.1.1 105465 1q7hA 153 5.54e+01 b.122.1.1,d.17.6.2 96042,96043 1odfA 290 5.61e+01 c.37.1.6 92782 1i8kA 107 5.63e+01 b.1.1.1 71130 1qtnA 164 5.70e+01 1pauA c.17.1.1 30999 1a7w 69 5.75e+01 1a7w a.22.1.2 16477 1whsB 153 5.82e+01 1whtB 1vjpA 394 5.93e+01 c.2.1.3,d.81.1.3 100828,100829 1lrzA 426 6.02e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1v5iB 76 6.19e+01 1im5A 180 6.22e+01 c.33.1.3 66211 1a32 88 6.26e+01 1a32 a.16.1.2 16384 1wudA 89 6.30e+01 1t6sA 162 6.33e+01 1uwfA 158 6.38e+01 2a4aA 281 6.39e+01 1shuX 182 6.42e+01 c.62.1.1 98882 1vrmA 325 6.48e+01 2g03A 194 6.48e+01 1z94A 147 6.51e+01 1q1fA 151 6.53e+01 a.1.1.2 104476 2aeuA 374 6.60e+01 1ig3A 263 6.66e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359 2fhzA 109 6.68e+01 1z41A 338 6.71e+01 1f6yA 262 6.83e+01 1f6yA c.1.21.2 29673 2gq1A 332 7.02e+01 1dkuA 317 7.05e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1ma3A 253 7.15e+01 c.31.1.5 78883 1jc9A 269 7.26e+01 d.171.1.1 66490 1v8hA 107 7.36e+01 1rypC 244 7.38e+01 1rypC d.153.1.4 41934 1zy9A 564 7.41e+01 3cox 507 7.44e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1ekeA 230 7.52e+01 1ekeA c.55.3.1 33572 1j27A 102 7.56e+01 d.58.50.1 90778 1zemA 262 7.57e+01 1molA 94 7.60e+01 1molA d.17.1.1 37988 1u69A 163 7.76e+01 d.32.1.7 107699 1uw4B 248 7.83e+01 a.118.1.14 100072 1y74A 57 7.87e+01 1io7A 368 7.92e+01 1f4tA a.104.1.1 18971 1gpmA 525 8.03e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1b5fA 239 8.07e+01 1smrA b.50.1.2 26836 1hm9A 468 8.09e+01 b.81.1.4,c.68.1.5 65866,65867 1cewI 108 8.11e+01 1cewI d.17.1.2 37999 1kwiA 101 8.15e+01 d.17.1.3 77564 1r1mA 164 8.16e+01 d.79.7.1 96820 1fxlA 167 8.17e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1vicA 262 8.19e+01 c.68.1.13 100756 1mzyA 333 8.19e+01 b.6.1.3,b.6.1.3 103848,103849 2d37A 176 8.28e+01 1mw9X 592 8.34e+01 e.10.1.1 91480 1tr0A 108 8.43e+01 d.58.4.4 107261 1bbzA 58 8.45e+01 1bbzA b.34.2.1 24477 2ddfA 257 8.49e+01 1qq9A 284 8.51e+01 1xjo c.56.5.4 33841 1l3kA 196 8.59e+01 d.58.7.1,d.58.7.1 73539,73540 1npsA 88 8.69e+01 1prs b.11.1.1 23622 1dhn 121 8.78e+01 1dhn d.96.1.3 40663 1u9iA 519 8.81e+01 1iqrA 420 8.91e+01 a.99.1.1,c.28.1.1 66275,66276 1wluA 136 8.94e+01 1xvsA 126 8.94e+01 1tkjA 284 8.98e+01