# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tv8A 340 4.06e-01 c.1.28.3 107352 2b06A 155 8.19e-01 1m7vA 363 9.78e-01 d.174.1.1 78748 1om4A 422 1.65e+00 d.174.1.1 87067 1dv1A 449 2.74e+00 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2bjvA 265 4.44e+00 2bkaA 242 6.47e+00 1np7A 489 7.32e+00 a.99.1.1,c.28.1.1 80677,80678 1iow 306 1.01e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1zy9A 564 1.02e+01 1wr2A 238 1.03e+01 1ugpB 226 1.05e+01 b.34.4.4 107832 1xg5A 279 1.14e+01 1ykiA 217 1.25e+01 1n9lA 109 1.34e+01 d.110.3.6 85468 1xu9A 286 1.34e+01 1ofdA 1520 1.38e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1w2yA 229 1.51e+01 a.204.1.1 109140 1amuA 563 1.57e+01 1amuA e.23.1.1 43351 1vqoE 178 1.68e+01 1ylnA 252 1.76e+01 1xneA 113 1.82e+01 1yspA 181 1.86e+01 1x38A 602 1.86e+01 1rypK 198 1.89e+01 d.153.1.4 41879 2gw6A 123 1.94e+01 1xhcA 367 1.95e+01 1aua 296 2.00e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1oz9A 150 2.03e+01 d.92.1.15 93808 1qkrA 188 2.03e+01 1qkrA a.24.9.1 16628 1rypF 233 2.06e+01 1rypF d.153.1.4 41937 1nmeA 146 2.47e+01 c.17.1.1 85874 7taa 478 2.58e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1ma3A 253 2.65e+01 c.31.1.5 78883 1zxxA 319 2.85e+01 1b67A 68 2.98e+01 1a7w a.22.1.2 16474 1iab 200 3.03e+01 1iae d.92.1.8 40312 1mrg 263 3.04e+01 1mrj d.165.1.1 42183 1olmA 403 3.14e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1ws8A 109 3.16e+01 1xuvA 178 3.18e+01 1gpmA 525 3.21e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1fm0D 81 3.30e+01 1fmaD d.15.3.1 37642 1khtA 192 3.50e+01 c.37.1.1 84401 1ev7A 317 3.76e+01 1ev7B c.52.1.9 33315 1rkbA 173 3.84e+01 1whsB 153 3.88e+01 1whtB 1pyoA 167 3.89e+01 c.17.1.1 95370 1sg6A 393 3.91e+01 e.22.1.1 105522 1z8sA 146 3.96e+01 1l8nA 679 4.04e+01 c.1.8.10,d.92.2.2 84564,84565 1qtnA 164 4.05e+01 1pauA c.17.1.1 30999 1nrjB 218 4.05e+01 c.37.1.8 86125 1o50A 157 4.10e+01 d.37.1.1,d.37.1.1 92478,92479 1kveB 77 4.19e+01 1kveB 1j3bA 529 4.20e+01 c.91.1.1,c.109.1.1 77071,77072 1fsgA 233 4.23e+01 1qk3A c.61.1.1 34029 1yyqA 374 4.27e+01 1jmxB 349 4.33e+01 b.69.2.2 66906 1z94A 147 4.40e+01 1g6aA 271 4.53e+01 1btl e.3.1.1 42704 1rypC 244 4.54e+01 1rypC d.153.1.4 41934 1aquA 297 4.55e+01 1aquA c.37.1.5 31942 1v5iB 76 4.60e+01 1kgsA 225 4.74e+01 a.4.6.1,c.23.1.1 68596,68597 2cu3A 64 4.89e+01 2b0lA 102 4.98e+01 1sflA 238 5.21e+01 1yarH 217 5.22e+01 1e2wA 251 5.29e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1lm4A 194 5.39e+01 d.167.1.1 84626 2afwA 329 5.40e+01 1vizA 240 5.69e+01 c.1.4.1 100784 1n3kA 130 5.75e+01 a.77.1.4 79965 1lrzA 426 5.79e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1woyA 500 5.82e+01 1r9dA 787 6.01e+01 c.7.1.1 104865 1j27A 102 6.24e+01 d.58.50.1 90778 1uwfA 158 6.32e+01 1brwA 433 6.34e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1ng6A 148 6.47e+01 a.182.1.1 85670 1fs5A 266 6.49e+01 c.124.1.1 65044 1oe1A 336 6.60e+01 b.6.1.3,b.6.1.3 86891,86892 1go4A 205 6.66e+01 d.135.1.1 70292 2d37A 176 6.69e+01 1oshA 232 6.70e+01 a.123.1.1 93496 2g8lA 299 6.70e+01 2fq4A 192 7.00e+01 1cojA 212 7.03e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1qy1A 174 7.04e+01 b.60.1.1 96568 1vrmA 325 7.06e+01 1u1iA 392 7.18e+01 c.2.1.3,d.81.1.3 107582,107583 1vqvA 306 7.28e+01 2gaiA 633 7.32e+01 1jb0D 138 7.33e+01 1jb0D d.187.1.1 62823 1nar 290 7.36e+01 1nar c.1.8.5 28988 3cox 507 7.37e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1vk8A 106 7.40e+01 d.58.48.1 108636 1owfB 94 7.62e+01 a.55.1.1 87488 1m8uA 173 7.72e+01 b.11.1.1,b.11.1.1 91233,91234 1ijbA 202 7.88e+01 c.62.1.1 71229 1w0mA 226 7.88e+01 c.1.1.1 109027 1ykdA 398 7.88e+01 1jmsA 381 8.07e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1zo2A 129 8.15e+01 1rypH 205 8.16e+01 d.153.1.4 41876 1d0cA 444 8.20e+01 d.174.1.1 64769 1jflA 228 8.26e+01 c.78.2.1,c.78.2.1 71656,71657 1wkvA 389 8.38e+01 2f6rA 281 8.39e+01 1wlyA 333 8.40e+01 2f6hX 419 8.47e+01 1vicA 262 8.55e+01 c.68.1.13 100756 1g5hA 454 8.64e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1nni1 174 8.66e+01 1kwiA 101 8.67e+01 d.17.1.3 77564 3psg 370 8.80e+01 1smrA b.50.1.2 26841 1bn7A 294 8.80e+01 1bn6A c.69.1.8 34677 1j8uA 325 8.86e+01 d.178.1.1 71611 1jtvA 327 8.92e+01 c.2.1.2 84230