# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1om4A 422 4.27e-01 d.174.1.1 87067 1m7vA 363 9.74e-01 d.174.1.1 78748 1amuA 563 1.37e+00 1amuA e.23.1.1 43351 1np7A 489 1.38e+00 a.99.1.1,c.28.1.1 80677,80678 1tv8A 340 1.47e+00 c.1.28.3 107352 1ykiA 217 3.35e+00 1n9lA 109 3.48e+00 d.110.3.6 85468 2b06A 155 3.87e+00 1vqoE 178 4.59e+00 1x38A 602 4.71e+00 1w2yA 229 4.93e+00 a.204.1.1 109140 1qkrA 188 5.10e+00 1qkrA a.24.9.1 16628 1ma3A 253 5.42e+00 c.31.1.5 78883 1zxxA 319 5.54e+00 1ugpB 226 7.15e+00 b.34.4.4 107832 1rypK 198 7.77e+00 d.153.1.4 41879 2bjvA 265 8.17e+00 1o50A 157 8.25e+00 d.37.1.1,d.37.1.1 92478,92479 1jtvA 327 8.71e+00 c.2.1.2 84230 1gpmA 525 8.88e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2gq1A 332 9.10e+00 1w0mA 226 9.26e+00 c.1.1.1 109027 1wr2A 238 9.60e+00 1xu9A 286 9.63e+00 1khtA 192 9.89e+00 c.37.1.1 84401 1xhcA 367 1.10e+01 1rypH 205 1.11e+01 d.153.1.4 41876 1ofdA 1520 1.12e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1rkbA 173 1.12e+01 2msbA 115 1.12e+01 1rtm1 d.169.1.1 42355 1sg6A 393 1.21e+01 e.22.1.1 105522 1xuvA 178 1.21e+01 1xneA 113 1.24e+01 1iab 200 1.26e+01 1iae d.92.1.8 40312 1bn7A 294 1.27e+01 1bn6A c.69.1.8 34677 1vqvA 306 1.30e+01 1rypF 233 1.32e+01 1rypF d.153.1.4 41937 1g6aA 271 1.34e+01 1btl e.3.1.1 42704 1brwA 433 1.34e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1i76A 163 1.40e+01 1hfc d.92.1.11 61877 2gw6A 123 1.47e+01 1zu4A 320 1.49e+01 1vizA 240 1.59e+01 c.1.4.1 100784 1yarH 217 1.64e+01 1d0cA 444 1.67e+01 d.174.1.1 64769 1sflA 238 1.70e+01 1mrg 263 1.70e+01 1mrj d.165.1.1 42183 1iow 306 1.76e+01 1iow c.30.1.2,d.142.1.1 31713,41481 2afwA 329 1.77e+01 1olmA 403 1.78e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1xg5A 279 1.82e+01 1n3kA 130 1.84e+01 a.77.1.4 79965 1wlyA 333 1.95e+01 1uw4B 248 2.03e+01 a.118.1.14 100072 1j27A 102 2.07e+01 d.58.50.1 90778 1zemA 262 2.11e+01 1j8uA 325 2.12e+01 d.178.1.1 71611 1fm0D 81 2.12e+01 1fmaD d.15.3.1 37642 1lrzA 426 2.18e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1g63A 181 2.20e+01 1g5qA c.34.1.1 60299 1iqrA 420 2.22e+01 a.99.1.1,c.28.1.1 66275,66276 1jmxB 349 2.29e+01 b.69.2.2 66906 1o5hA 214 2.43e+01 a.191.1.1 92497 1evsA 187 2.47e+01 1evsA a.26.1.1 16845 1pbyB 337 2.48e+01 b.69.2.2 94422 1upsA 420 2.54e+01 1ayl 541 2.58e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1rypI 222 2.63e+01 d.153.1.4 41877 2g03A 194 2.63e+01 1dkuA 317 2.74e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1kwiA 101 2.81e+01 d.17.1.3 77564 1ra0A 430 2.84e+01 1ylnA 252 2.85e+01 1jmsA 381 2.89e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1v5iB 76 2.97e+01 1ev7A 317 2.99e+01 1ev7B c.52.1.9 33315 1rypC 244 3.01e+01 1rypC d.153.1.4 41934 2f6rA 281 3.03e+01 1qtwA 285 3.09e+01 1qumA c.1.15.1 29392 830cA 168 3.09e+01 1ck7A d.92.1.11 40400 1dv1A 449 3.09e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1s2xA 206 3.10e+01 a.47.3.1 105229 1q7zA 566 3.18e+01 c.1.21.2,c.1.26.1 96090,96091 2fq4A 192 3.34e+01 1mxgA 435 3.41e+01 b.71.1.1,c.1.8.1 85193,85194 1ub3A 220 3.47e+01 c.1.10.1 88395 1r9dA 787 3.48e+01 c.7.1.1 104865 2a4aA 281 3.48e+01 1ws8A 109 3.48e+01 1sl4A 155 3.58e+01 d.169.1.1 105710 1z8sA 146 3.60e+01 2gsq 202 3.60e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1whsB 153 3.62e+01 1whtB 1b67A 68 3.63e+01 1a7w a.22.1.2 16474 1yyqA 374 3.65e+01 2d37A 176 3.69e+01 1qtnA 164 3.78e+01 1pauA c.17.1.1 30999 1oe8A 211 3.90e+01 a.45.1.1,c.47.1.5 86905,86906 2amxA 376 3.93e+01 1ooeA 236 3.96e+01 c.2.1.2 87196 1pzgA 331 3.97e+01 c.2.1.5,d.162.1.1 95425,95426 1fukA 165 4.01e+01 1fukA c.37.1.19 32409 1gntA 553 4.02e+01 e.26.1.1 70290 1vjpA 394 4.06e+01 c.2.1.3,d.81.1.3 100828,100829 1z41A 338 4.06e+01 1msk 331 4.09e+01 1msk d.173.1.1 42495 1kveB 77 4.10e+01 1kveB 2fu4A 83 4.12e+01 2cu3A 64 4.14e+01 2cveA 191 4.19e+01 1z94A 147 4.21e+01 2a9gA 418 4.23e+01 1xr4A 509 4.24e+01 1bbzA 58 4.38e+01 1bbzA b.34.2.1 24477 2a3qA 170 4.38e+01 2fhzA 109 4.44e+01 1vhrA 184 4.47e+01 1vhrA c.45.1.1 32651 1fkmA 396 4.51e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1mngA 203 4.52e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1nf1A 333 4.53e+01 1nf1A a.116.1.2 19110 2fuvA 549 4.53e+01 1mlwA 301 4.56e+01 d.178.1.1 79289 1a0cA 438 4.57e+01 1a0cA c.1.15.3 29529 1yspA 181 4.60e+01 1hqz1 141 4.63e+01 1aua 296 4.64e+01 1aua a.5.3.1,c.13.1.1 16290,30882 2b0lA 102 4.67e+01 1ykdA 398 4.72e+01 1fsgA 233 4.79e+01 1qk3A c.61.1.1 34029 1nmeA 146 4.80e+01 c.17.1.1 85874 1tr0A 108 4.86e+01 d.58.4.4 107261 1wu7A 434 4.88e+01 1qy1A 174 4.94e+01 b.60.1.1 96568 2gokA 429 4.94e+01 1p6oA 161 4.95e+01 c.97.1.2 94185 1vmbA 140 4.99e+01 1qq9A 284 5.02e+01 1xjo c.56.5.4 33841 1dzkA 157 5.04e+01 1obpA b.60.1.1 27096 1egwA 77 5.11e+01 1mnmA d.88.1.1 40234 1vquA 374 5.12e+01 1yovA 537 5.15e+01 1oz9A 150 5.17e+01 d.92.1.15 93808 1frb 315 5.25e+01 1frb c.1.7.1 28665 1ltzA 297 5.26e+01 d.178.1.1 74254 1hy7A 173 5.30e+01 d.92.1.11 65957 1tjyA 316 5.34e+01 c.93.1.1 107062 1jb0D 138 5.57e+01 1jb0D d.187.1.1 62823 1lucA 355 5.60e+01 1lucA c.1.16.1 29547 1oe1A 336 5.60e+01 b.6.1.3,b.6.1.3 86891,86892 1ng6A 148 5.61e+01 a.182.1.1 85670 1l8aA 886 5.62e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1bywA 110 5.73e+01 1bywA d.110.3.6 40912 1qlmA 316 5.76e+01 1qlmA d.147.1.1 41765 1yarA 233 5.78e+01 2fkzA 155 5.79e+01 1hdcA 253 5.80e+01 1e6wA c.2.1.2 29862 1xmxA 385 5.83e+01 2gfhA 260 5.83e+01 1vjzA 341 5.87e+01 c.1.8.3 100838 1uwfA 158 5.99e+01 1z98A 281 6.01e+01 1zndA 174 6.08e+01 1kgsA 225 6.13e+01 a.4.6.1,c.23.1.1 68596,68597 1ylhA 560 6.15e+01 1j3bA 529 6.17e+01 c.91.1.1,c.109.1.1 77071,77072 1i8kA 107 6.17e+01 b.1.1.1 71130 1xvsA 126 6.19e+01 1yckA 175 6.22e+01 1a34A 159 6.26e+01 1a34A b.121.7.1 23286 1z90A 469 6.27e+01 1k1fA 72 6.30e+01 a.147.1.1 68007 2aeuA 374 6.37e+01 1li5A 461 6.38e+01 a.27.1.1,c.26.1.1 73912,73913 1uu1A 335 6.38e+01 c.67.1.1 99993 1v25A 541 6.38e+01 e.23.1.1 108275 1tzvA 142 6.42e+01 a.79.1.1 107526 1p9yA 121 6.45e+01 d.241.2.1 94402 1dvpA 220 6.47e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1m8uA 173 6.49e+01 b.11.1.1,b.11.1.1 91233,91234 1a7w 69 6.53e+01 1a7w a.22.1.2 16477 1vjoA 393 6.54e+01 c.67.1.3 100827 4uagA 437 6.55e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1yc9A 442 6.57e+01 1sdoA 203 6.59e+01 c.52.1.21 98809 2f6hX 419 6.62e+01 1wwiA 148 6.64e+01 1gnlA 544 6.66e+01 e.26.1.1 70287 7taa 478 6.75e+01 7taa b.71.1.1,c.1.8.1 27778,28765 2f6uA 234 6.78e+01 1dd9A 338 6.80e+01 1dd9A e.13.1.1 43254 1wyuB 474 6.86e+01 1o13A 136 6.88e+01 c.55.5.1 80762 1go4A 205 6.96e+01 d.135.1.1 70292 1k2xB 143 6.97e+01 1shuX 182 6.99e+01 c.62.1.1 98882 2c3mA 1231 6.99e+01 1e2wA 251 7.03e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1y0hA 105 7.08e+01 2c2xA 281 7.15e+01 1amm 174 7.17e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1xffA 240 7.20e+01 d.153.1.1 109580 2b18A 164 7.22e+01 1ztpA 251 7.36e+01 2fq3A 104 7.40e+01 1im8A 244 7.43e+01 c.66.1.14 66212 1k7jA 206 7.46e+01 d.115.1.1 72103 2ceyA 306 7.56e+01 1gpc 218 7.59e+01 1gpc b.40.4.7 25393 1y8qA 346 7.65e+01 1iirA 415 7.71e+01 1iirA c.87.1.5 62453 1tdpA 111 7.76e+01 a.29.8.1 106781 1ht6A 405 7.77e+01 b.71.1.1,c.1.8.1 83629,83630 1nar 290 7.97e+01 1nar c.1.8.5 28988 1tzzA 392 8.07e+01 1qqfA 277 8.08e+01 1c3d a.102.4.4 18875 2fckA 181 8.16e+01 2gaiA 633 8.23e+01 2ddfA 257 8.24e+01 2a6hC 1119 8.26e+01 1q1fA 151 8.28e+01 a.1.1.2 104476 1fs1A 53 8.28e+01 1fqvA a.158.1.1 19250 1rliA 184 8.30e+01 c.23.5.6 97647 1tkjA 284 8.35e+01 1mzyA 333 8.41e+01 b.6.1.3,b.6.1.3 103848,103849 1g2qA 187 8.45e+01 c.61.1.1 65117 1i0dA 332 8.46e+01 1pscA c.1.9.3 61487 1j5sA 463 8.47e+01 c.1.9.8 71580 1l8nA 679 8.48e+01 c.1.8.10,d.92.2.2 84564,84565 1y74A 57 8.50e+01 1oshA 232 8.56e+01 a.123.1.1 93496 1vrmA 325 8.57e+01 1zk4A 251 8.59e+01 1nfvA 179 8.60e+01 a.25.1.1 85642 1vgmA 378 8.65e+01 1pg4A 652 8.68e+01 e.23.1.1 88067 1xrxA 50 8.69e+01 1ir6A 424 8.72e+01 c.107.1.2 71342 1vcsA 102 8.75e+01 1l7mA 211 8.75e+01 c.108.1.4 73664 1mwwA 128 8.78e+01 d.80.1.4 91483 1jnyA 435 8.78e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1o6zA 303 8.80e+01 c.2.1.5,d.162.1.1 81107,81108 2f94F 350 8.84e+01 1cojA 212 8.86e+01 1avmA a.2.11.1,d.44.1.1 15737,38734