# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fs5A 266 3.21e+00 c.124.1.1 65044 1x38A 602 3.35e+00 2b06A 155 3.92e+00 1kafA 108 4.19e+00 d.199.1.1 68372 1ne7A 289 5.07e+00 c.124.1.1 91833 1zkdA 387 5.85e+00 1qy1A 174 6.06e+00 b.60.1.1 96568 1nmeA 146 6.16e+00 c.17.1.1 85874 1zndA 174 6.20e+00 1dzkA 157 8.26e+00 1obpA b.60.1.1 27096 3psg 370 9.03e+00 1smrA b.50.1.2 26841 1pn2A 280 1.04e+01 d.38.1.4,d.38.1.4 94930,94931 1jmxB 349 1.20e+01 b.69.2.2 66906 1ixh 321 1.21e+01 1ixh c.94.1.1 35761 1mdl 359 1.32e+01 2mnr c.1.11.2,d.54.1.1 29247,38891 1o13A 136 1.33e+01 c.55.5.1 80762 1sqhA 312 1.44e+01 d.108.1.5 98966 2bkxA 242 1.49e+01 1iuqA 367 1.53e+01 c.112.1.1 90703 2apr 325 1.59e+01 2er7E b.50.1.2 26819 2f9dA 125 1.80e+01 3fib 249 1.97e+01 3fib d.171.1.1 42455 1o6zA 303 2.01e+01 c.2.1.5,d.162.1.1 81107,81108 2c0nA 203 2.21e+01 1snnA 227 2.30e+01 d.115.1.2 105821 1amuA 563 2.36e+01 1amuA e.23.1.1 43351 1pt6A 213 2.63e+01 c.62.1.1 95091 1mxmA 254 2.71e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1tv8A 340 2.82e+01 c.1.28.3 107352 1h72C 296 2.82e+01 d.14.1.5,d.58.26.1 60712,60713 1xneA 113 2.90e+01 1u04A 771 3.07e+01 b.34.14.1,c.55.3.10 107539,107540 1q25A 432 3.44e+01 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 1qtnA 164 3.46e+01 1pauA c.17.1.1 30999 1qmgA 524 3.52e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1zy9A 564 3.61e+01 1f6yA 262 3.72e+01 1f6yA c.1.21.2 29673 1o50A 157 3.87e+01 d.37.1.1,d.37.1.1 92478,92479 1qdeA 224 3.88e+01 1qvaA c.37.1.19 32410 2hgsA 474 3.97e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1jubA 311 4.07e+01 c.1.4.1 90908 1i5gA 144 4.11e+01 1ewxA c.47.1.10 61784 1nf1A 333 4.18e+01 1nf1A a.116.1.2 19110 2cu3A 64 4.27e+01 1xrtA 467 4.38e+01 1zowA 313 4.52e+01 1w0mA 226 4.67e+01 c.1.1.1 109027 1k2xB 143 4.75e+01 1pbyB 337 4.77e+01 b.69.2.2 94422 1sdoA 203 4.81e+01 c.52.1.21 98809 1cjaA 342 4.86e+01 1cjaA d.144.1.3 41708 1bouA 139 5.04e+01 1bouA a.88.1.1 18521 2lisA 136 5.11e+01 1lis a.19.1.1 16405 1z94A 147 5.13e+01 1ev7A 317 5.18e+01 1ev7B c.52.1.9 33315 1bf6A 291 5.20e+01 1pscA c.1.9.3 29065 1kqfA 1015 5.28e+01 b.52.2.2,c.81.1.1 72871,72872 1tqyA 424 5.44e+01 c.95.1.1,c.95.1.1 107245,107246 2bjvA 265 5.56e+01 2b9lA 394 5.60e+01 1hnjA 317 5.91e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1lm4A 194 5.92e+01 d.167.1.1 84626 1iznB 277 5.96e+01 e.43.1.2 83848 2bw4A 340 5.96e+01 1xjjA 644 5.99e+01 2bw0A 329 6.12e+01 1pbwA 216 6.15e+01 1pbwA a.116.1.1 19103 1xo5A 183 6.40e+01 1ro0A 216 6.48e+01 d.264.1.2 97664 1ro2A 216 6.56e+01 d.264.1.2 97665 2cvxA 888 6.56e+01 1m4tA 392 6.61e+01 c.95.1.1,c.95.1.1 78617,78618 1oi6A 205 6.72e+01 b.82.1.1 103940 1uq5A 263 6.91e+01 d.165.1.1 99778 1me8A 503 7.04e+01 c.1.5.1 79028 1n4qB 377 7.14e+01 a.102.4.3 91636 1hjsA 332 7.47e+01 c.1.8.3 83492 1gefA 123 7.68e+01 1gefA c.52.1.18 60465 1hx0A 496 7.89e+01 b.71.1.1,c.1.8.1 61346,61347 1yrtA 364 7.91e+01 1l8bA 190 7.92e+01 d.86.1.1 73683 1txvA 452 7.99e+01 1o58A 303 8.03e+01 c.79.1.1 92491 2feaA 236 8.08e+01 1oz9A 150 8.15e+01 d.92.1.15 93808 1dhkB 223 8.46e+01 1led b.29.1.1 24157 1lbu 213 8.49e+01 1lbu a.20.1.1,d.65.1.1 16416,39549 1ijbA 202 8.74e+01 c.62.1.1 71229 1c4rA 182 8.79e+01 1c4rA b.29.1.4 24229 1uxtA 501 8.97e+01 c.82.1.1 108125