# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1amuA 563 1.56e+00 1amuA e.23.1.1 43351 1sjqA 105 3.22e+00 d.58.7.1 105660 1zkdA 387 3.51e+00 1xr4A 509 4.94e+00 2b06A 155 6.17e+00 2cu3A 64 6.45e+00 1jmxB 349 7.48e+00 b.69.2.2 66906 2bkaA 242 8.68e+00 1w0mA 226 9.68e+00 c.1.1.1 109027 2ad9A 119 1.12e+01 1ps9A 671 1.14e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1kafA 108 1.14e+01 d.199.1.1 68372 1jv4A 162 1.23e+01 b.60.1.1 67343 1o50A 157 1.29e+01 d.37.1.1,d.37.1.1 92478,92479 1icrA 217 1.33e+01 1vfrA d.90.1.1 62274 1ywnA 316 1.38e+01 1qy1A 174 1.46e+01 b.60.1.1 96568 1tuzA 118 1.48e+01 1dzkA 157 1.52e+01 1obpA b.60.1.1 27096 1e8gA 560 1.54e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1i05A 180 1.62e+01 1mup b.60.1.1 27130 1zndA 174 1.63e+01 1pbyB 337 1.65e+01 b.69.2.2 94422 1qyaA 307 1.67e+01 d.21.1.2,d.21.1.2 104653,104654 1wmiA 90 1.69e+01 1sdjA 310 1.69e+01 d.21.1.2,d.21.1.2 98807,98808 1i06A 180 1.71e+01 1mup b.60.1.1 27131 1ykiA 217 1.73e+01 1x38A 602 1.96e+01 1mup 166 1.99e+01 1mup b.60.1.1 27133 2c0nA 203 2.00e+01 2ghpA 292 2.02e+01 1kn6A 90 2.04e+01 d.58.3.3 72770 1nmeA 146 2.04e+01 c.17.1.1 85874 1dbtA 239 2.08e+01 1dbtA c.1.2.3 28539 1ex1A 605 2.11e+01 1ex1A c.1.8.7,c.23.11.1 29013,31347 1sg6A 393 2.15e+01 e.22.1.1 105522 1wwkA 307 2.33e+01 2afwA 329 2.35e+01 1ixh 321 2.69e+01 1ixh c.94.1.1 35761 2f9dA 125 2.75e+01 1dhkB 223 2.91e+01 1led b.29.1.1 24157 1z94A 147 2.93e+01 2d2mB 142 3.02e+01 2arhA 203 3.06e+01 1sflA 238 3.27e+01 1n3kA 130 3.60e+01 a.77.1.4 79965 1wbsA 360 3.60e+01 2gfsA 372 3.65e+01 1aua 296 3.74e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1oz9A 150 3.76e+01 d.92.1.15 93808 1qc5A 192 3.77e+01 1aoxA c.62.1.1 34147 1gv3A 248 3.77e+01 a.2.11.1,d.44.1.1 70585,70586 1fs5A 266 3.78e+01 c.124.1.1 65044 2a0b 125 3.79e+01 2a0b a.24.10.1 16630 1mxmA 254 3.89e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1ibrB 462 3.95e+01 1qgrA a.118.1.1 19120 1ijbA 202 4.09e+01 c.62.1.1 71229 1j98A 157 4.10e+01 1j98A d.185.1.2 62755 1e0tA 470 4.44e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1r9gA 216 4.51e+01 c.23.16.1 97258 1ehyA 294 4.54e+01 1ehyA c.69.1.11 34693 1sfjA 238 4.55e+01 2cokA 113 4.64e+01 1pt6A 213 5.00e+01 c.62.1.1 95091 1ox6A 555 5.05e+01 c.1.2.1,c.23.16.1 87505,87506 1xneA 113 5.26e+01 1s1qA 145 5.27e+01 d.20.1.2 98351 1q25A 432 5.36e+01 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 1jf8A 131 5.53e+01 c.44.1.1 66621 1wg8A 285 5.62e+01 1ne7A 289 5.65e+01 c.124.1.1 91833 1qwgA 251 5.82e+01 c.1.27.1 96473 1r3cA 366 5.86e+01 d.144.1.7 96906 1d9tA 289 5.90e+01 1deaA 1xclA 235 5.92e+01 1w1kA 560 5.95e+01 d.58.32.1,d.145.1.1 109059,109060 2bjvA 265 6.09e+01 1vjuA 309 6.30e+01 d.248.1.1 100835 2gokA 429 6.37e+01 2c1lA 358 6.39e+01 1qamA 244 6.62e+01 2ercA c.66.1.24 34220 2fq3A 104 6.71e+01 1wf9A 107 6.92e+01 1jb9A 316 7.09e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1ro2A 216 7.10e+01 d.264.1.2 97665 1gyhA 318 7.11e+01 b.67.2.1 70757 1fcdA 401 7.17e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1ltlA 279 7.30e+01 b.40.4.11 84701 1ev7A 317 7.46e+01 1ev7B c.52.1.9 33315 1tuc 63 7.53e+01 1tuc b.34.2.1 24492 1exbA 332 7.65e+01 1qrqA c.1.7.1 28666 1w6tA 444 7.71e+01 1b74A 254 7.96e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1r13A 148 7.96e+01 d.169.1.1,h.1.1.1 96782,96783 1tdpA 111 7.98e+01 a.29.8.1 106781 1nrjB 218 8.01e+01 c.37.1.8 86125 1ltzA 297 8.08e+01 d.178.1.1 74254 1lbu 213 8.10e+01 1lbu a.20.1.1,d.65.1.1 16416,39549 1prs 173 8.16e+01 1prs b.11.1.1,b.11.1.1 23625,23626 1qcwA 410 8.20e+01 1gox c.1.4.1 28622 1dorA 311 8.30e+01 2dorA c.1.4.1 28595 1fnsA 196 8.44e+01 1auq c.62.1.1 34136 1zzlA 351 8.50e+01 1nx8A 273 8.52e+01 b.82.2.8 86374 1h2sA 225 8.57e+01 f.13.1.1 76578 2av5A 120 8.68e+01 1itg 166 8.79e+01 1b9dA c.55.3.2 33661 1qdeA 224 8.99e+01 1qvaA c.37.1.19 32410