# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zkdA 387 1.05e+00 1mup 166 7.40e+00 1mup b.60.1.1 27133 2f9dA 125 8.01e+00 1i06A 180 8.28e+00 1mup b.60.1.1 27131 1jv4A 162 9.25e+00 b.60.1.1 67343 1qy1A 174 9.45e+00 b.60.1.1 96568 1fs5A 266 9.51e+00 c.124.1.1 65044 1i05A 180 9.53e+00 1mup b.60.1.1 27130 1kafA 108 9.54e+00 d.199.1.1 68372 1zndA 174 9.72e+00 1zowA 313 1.07e+01 1ne7A 289 1.28e+01 c.124.1.1 91833 1x38A 602 1.32e+01 1d9tA 289 1.34e+01 1deaA 1amuA 563 1.35e+01 1amuA e.23.1.1 43351 1q25A 432 1.43e+01 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 2b06A 155 1.45e+01 1jlnA 297 1.59e+01 1pty c.45.1.2 63172 1dzkA 157 1.66e+01 1obpA b.60.1.1 27096 1ex1A 605 1.70e+01 1ex1A c.1.8.7,c.23.11.1 29013,31347 1sjqA 105 1.78e+01 d.58.7.1 105660 1snnA 227 1.80e+01 d.115.1.2 105821 1pvyA 227 1.82e+01 d.115.1.2 95195 1pn2A 280 1.83e+01 d.38.1.4,d.38.1.4 94930,94931 1u04A 771 2.00e+01 b.34.14.1,c.55.3.10 107539,107540 1r9gA 216 2.02e+01 c.23.16.1 97258 2cu3A 64 2.11e+01 1z94A 147 2.27e+01 1mdl 359 2.56e+01 2mnr c.1.11.2,d.54.1.1 29247,38891 1ibrB 462 2.60e+01 1qgrA a.118.1.1 19120 1ixh 321 2.60e+01 1ixh c.94.1.1 35761 1vjuA 309 2.71e+01 d.248.1.1 100835 2hgsA 474 2.75e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1kcbA 340 2.85e+01 b.6.1.3,b.6.1.3 90951,90952 1nif 340 2.93e+01 1nif b.6.1.3,b.6.1.3 23048,23049 2bkxA 242 2.93e+01 1wg8A 285 3.04e+01 2mnr 357 3.05e+01 2mnr c.1.11.2,d.54.1.1 29245,38889 1lm4A 194 3.29e+01 d.167.1.1 84626 1ywnA 316 3.44e+01 1j6oA 268 3.47e+01 c.1.9.12 77088 2bvyA 475 3.48e+01 1j9qA 341 3.64e+01 1nif b.6.1.3,b.6.1.3 62765,62766 1sqhA 312 3.70e+01 d.108.1.5 98966 2ad9A 119 3.75e+01 1xneA 113 3.86e+01 2bw4A 340 3.87e+01 1c4rA 182 3.90e+01 1c4rA b.29.1.4 24229 1ni4A 365 3.96e+01 c.36.1.11 85728 2c0nA 203 4.10e+01 1gq6A 313 4.21e+01 c.42.1.1 70341 1r6lA 239 4.26e+01 d.14.1.4,d.101.1.1 97153,97154 1snrA 341 4.26e+01 b.6.1.3,b.6.1.3 105823,105824 1iuqA 367 4.32e+01 c.112.1.1 90703 2c1lA 358 4.39e+01 4pep 326 4.41e+01 1smrA b.50.1.2 26843 1jmxB 349 4.42e+01 b.69.2.2 66906 2dorA 311 4.48e+01 2dorA c.1.4.1 28593 3psg 370 4.69e+01 1smrA b.50.1.2 26841 1jvnA 555 4.80e+01 c.1.2.1,c.23.16.1 67355,67356 2fibA 269 4.86e+01 3fib d.171.1.1 42457 1nf1A 333 4.91e+01 1nf1A a.116.1.2 19110 1o58A 303 4.97e+01 c.79.1.1 92491 1ak5 503 5.12e+01 1ak5 c.1.5.1 28639 1mxmA 254 5.17e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 3aprE 325 5.33e+01 2er7E b.50.1.2 26820 2lisA 136 5.50e+01 1lis a.19.1.1 16405 1bouA 139 5.52e+01 1bouA a.88.1.1 18521 1lis 136 5.57e+01 1lis a.19.1.1 16406 1xrtA 467 5.61e+01 1obpA 159 5.66e+01 1obpA b.60.1.1 27092 1qmgA 524 5.70e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1cjaA 342 5.77e+01 1cjaA d.144.1.3 41708 2apr 325 5.88e+01 2er7E b.50.1.2 26819 1dorA 311 6.20e+01 2dorA c.1.4.1 28595 1qyaA 307 6.25e+01 d.21.1.2,d.21.1.2 104653,104654 1ptmA 329 6.49e+01 c.77.1.3 95104 1sdjA 310 6.85e+01 d.21.1.2,d.21.1.2 98807,98808 1o6zA 303 6.92e+01 c.2.1.5,d.162.1.1 81107,81108 2bjvA 265 6.99e+01 1kqfA 1015 7.01e+01 b.52.2.2,c.81.1.1 72871,72872 1k30A 368 7.05e+01 c.112.1.1 68067 1pt6A 213 7.39e+01 c.62.1.1 95091 1o50A 157 7.56e+01 d.37.1.1,d.37.1.1 92478,92479 1hnjA 317 7.62e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1ijbA 202 7.62e+01 c.62.1.1 71229 1qwrA 319 7.66e+01 b.82.1.3 96491 1tv8A 340 8.08e+01 c.1.28.3 107352 1nmeA 146 8.17e+01 c.17.1.1 85874 1s3iA 310 8.38e+01 b.46.1.1,c.65.1.1 98435,98436 1pbyB 337 8.40e+01 b.69.2.2 94422 1dbtA 239 8.48e+01 1dbtA c.1.2.3 28539 1ehyA 294 8.61e+01 1ehyA c.69.1.11 34693 1ox6A 555 8.72e+01 c.1.2.1,c.23.16.1 87505,87506 1oi6A 205 8.83e+01 b.82.1.1 103940 1o13A 136 8.84e+01 c.55.5.1 80762 1ev7A 317 8.97e+01 1ev7B c.52.1.9 33315