# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1f3lA 321 5.97e-23 1g6q2 c.66.1.6 59630 1jg1A 235 9.02e-16 c.66.1.7 66661 1dl5A 317 2.26e-14 1dl5A c.66.1.7,d.197.1.1 64720,64721 1i9gA 280 5.53e-14 c.66.1.13 62090 1g38A 393 3.15e-13 2admA c.66.1.27 60235 1dusA 194 6.24e-13 1dusA c.66.1.4 34182 1im8A 244 7.24e-13 c.66.1.14 66212 1ne2A 200 3.61e-11 c.66.1.32 85586 1o54A 277 1.68e-10 c.66.1.13 92482 1i1nA 226 3.79e-09 c.66.1.7 71102 1i4wA 353 5.46e-09 c.66.1.24 66028 1sqgA 429 2.46e-08 a.79.1.3,c.66.1.38 105912,105913 1ixkA 315 1.02e-06 c.66.1.38 90716 1xdzA 240 4.55e-06 1fp2A 352 4.89e-06 1fpxA a.4.5.29,c.66.1.12 59941,59942 1h1dA 221 7.53e-06 c.66.1.1 83452 1inlA 296 1.11e-05 c.66.1.17 66220 1g8aA 227 2.77e-05 c.66.1.3 90506 1ej0A 180 3.76e-05 1ej0A c.66.1.2 34179 1g55A 343 6.96e-05 1g55A c.66.1.26 34247 1cydA 244 3.66e-04 1cydA c.2.1.2 29825 1jvbA 347 1.04e-03 b.35.1.2,c.2.1.1 77181,77182 1xu9A 286 1.48e-03 1jtvA 327 2.57e-03 c.2.1.2 84230 1wmaA 276 2.90e-03 1o9gA 250 3.05e-03 c.66.1.29 86692 1af7 274 3.27e-03 1af7 a.58.1.1,c.66.1.8 17928,34203 1nytA 271 4.33e-03 c.2.1.7,c.58.1.5 86417,86418 1g8sA 230 4.53e-03 c.66.1.3 90507 1fcdA 401 4.71e-03 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1bc5A 269 5.04e-03 1af7 a.58.1.1,c.66.1.8 17929,34204 1fp1D 372 5.32e-03 1fpqA a.4.5.29,c.66.1.12 59939,59940 1rjdA 334 5.36e-03 c.66.1.37 97558 1eg2A 319 6.51e-03 1eg2A c.66.1.11 34249 1fmcA 255 7.96e-03 1cydA c.2.1.2 29856 1g60A 260 8.22e-03 c.66.1.11 70151 1ja9A 274 1.22e-02 c.2.1.2 62817 1iy8A 267 2.12e-02 c.2.1.2 83774 1x7dA 350 3.63e-02 1gegA 256 3.98e-02 1ybvA c.2.1.2 29888 1bg6 359 5.20e-02 1bg6 a.100.1.5,c.2.1.6 18810,30214 1xg5A 279 7.27e-02 1jbeA 128 9.04e-02 3chy c.23.1.1 62845 1kgsA 225 1.21e-01 a.4.6.1,c.23.1.1 68596,68597 1ytlA 174 1.22e-01 1r6dA 337 1.27e-01 c.2.1.2 97148 1uufA 369 1.35e-01 b.35.1.2,c.2.1.1 100006,100007 1ooeA 236 1.38e-01 c.2.1.2 87196 1bdb 277 1.60e-01 1bdb c.2.1.2 29874 1w6uA 302 2.19e-01 1n9eA 787 3.10e-01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1e2kA 331 3.53e-01 1qhiA c.37.1.1 31854 1lst 239 3.83e-01 1lst c.94.1.1 35755 1d4aA 273 4.04e-01 1d4aA c.23.5.3 31219 1fjhA 257 4.92e-01 1fjhB c.2.1.2 29870 1qmvA 197 5.21e-01 1qq2A c.47.1.10 33066 1k92A 455 5.44e-01 c.26.2.1,d.210.1.1 68325,68326 1hdcA 253 5.57e-01 1e6wA c.2.1.2 29862 1gpjA 404 6.68e-01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1xgkA 352 7.18e-01 1f8rA 498 7.19e-01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1t2dA 322 7.90e-01 c.2.1.5,d.162.1.1 99084,99085 1p3dA 475 8.10e-01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1p1xA 260 9.24e-01 c.1.10.1 104060 1g3qA 237 1.16e+00 1hyqA c.37.1.10 60237 1snyA 267 1.36e+00 c.2.1.2 105833 1hl9A 449 1.48e+00 b.71.1.3,c.1.8.11 90650,90651 1h2bA 359 1.55e+00 b.35.1.2,c.2.1.1 90543,90544 1j0hA 588 1.55e+00 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2evaA 307 1.81e+00 1hdoA 206 1.88e+00 1he2A c.2.1.2 60965 2bkaA 242 2.01e+00 1kaeA 434 2.07e+00 c.82.1.2 72247 1wvgA 359 2.11e+00 1k6iA 352 2.14e+00 c.2.1.2 68223 1qsgA 265 2.25e+00 1eny c.2.1.2 29935 1g0oA 283 2.41e+00 1ybvA c.2.1.2 60181 1nvmB 312 2.42e+00 c.2.1.3,d.81.1.1 86251,86252 1jayA 212 2.45e+00 c.2.1.6 66478 1dxy 333 2.72e+00 1dxy c.2.1.4,c.23.12.1 30094,31354 1fxxA 482 2.90e+00 1fxxA c.55.3.5 33726 1kq3A 376 3.35e+00 e.22.1.2 68790 1oruA 195 3.50e+00 b.58.1.2 93464 1su8A 636 3.77e+00 e.26.1.2 98999 1w2wB 191 3.77e+00 1sqsA 242 3.91e+00 c.23.5.5 98968 2dpmA 284 4.20e+00 2dpmA c.66.1.28 34246 1on2A 142 4.27e+00 a.4.5.24,a.76.1.1 87103,87104 1ff9A 450 4.30e+00 1ff9A c.2.1.3,d.81.1.2 30039,39954 1ju2A 536 4.59e+00 c.3.1.2,d.16.1.1 77169,77170 1gq6A 313 4.61e+00 c.42.1.1 70341 1c1dA 355 4.85e+00 1bw9A c.2.1.7,c.58.1.1 30270,33918 1j99A 293 4.97e+00 c.37.1.5 71618 1f8fA 371 4.97e+00 b.35.1.2,c.2.1.1 83246,83247 1o4vA 183 5.17e+00 c.23.8.1 86628 1c0pA 363 5.21e+00 1an9A c.4.1.2,d.16.1.3 30647,37934 1iznA 286 5.26e+00 e.43.1.1 83847 1cnzA 363 5.27e+00 1cnzA c.77.1.1 35061 1jmkC 230 5.38e+00 c.69.1.22 71747 1jubA 311 5.47e+00 c.1.4.1 90908 1kolA 398 5.58e+00 b.35.1.2,c.2.1.1 77474,77475 1chuA 540 5.62e+00 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1owlA 484 5.73e+00 a.99.1.1,c.28.1.1 93647,93648 1fl2A 310 5.83e+00 1hyuA c.3.1.5,c.3.1.5 59869,59870 1i52A 236 5.89e+00 1i52A c.68.1.13 61767 1orrA 347 5.99e+00 c.2.1.2 93460 1hulA 108 6.27e+00 1hulA a.26.1.2 16865 1ep3B 262 6.50e+00 1ep2B b.43.4.2,c.25.1.3 25664,31554 1ro7A 259 6.57e+00 c.130.1.1 97667 1i24A 404 6.62e+00 c.2.1.2 83663 1h5qA 265 6.97e+00 1cydA c.2.1.2 60643 1cl1A 395 7.02e+00 1cl2A c.67.1.3 34395 1mr7A 209 7.03e+00 b.81.1.3 91430 1t5bA 201 7.12e+00 c.23.5.3 106433 1r89A 437 7.44e+00 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1vc4A 254 7.47e+00 c.1.2.4 100557 1o1yA 239 7.81e+00 c.23.16.1 86554 1f4pA 147 7.96e+00 5nul c.23.5.1 59651 1ig3A 263 8.06e+00 1ig3A b.82.6.1,c.100.1.1 62358,62359 1ji1A 637 8.24e+00 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1hw7A 255 8.32e+00 1i7fA d.193.1.1 61297 1d3yA 301 8.63e+00 1d3yA e.12.1.1 43252 1h05A 146 8.82e+00 c.23.13.1 76433 1d9uA 154 9.02e+00 1am7A d.2.1.4 59111 1a99A 344 9.17e+00 1pot c.94.1.1 35812 1x74A 360 9.62e+00 1pot 325 9.90e+00 1pot c.94.1.1 35807 2arcA 164 1.02e+01 2arcA b.82.4.1 28148 1g3mA 294 1.06e+01 c.37.1.5 83268 1cznA 169 1.14e+01 1rcf c.23.5.1 31181 1hyhA 309 1.15e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1bjt 793 1.16e+01 1bjt e.11.1.1 43249 1id1A 153 1.18e+01 1id1A c.2.1.9 62286 1o97C 264 1.18e+01 c.26.2.3 81232 1mw9X 592 1.31e+01 e.10.1.1 91480 1mb3A 124 1.34e+01 c.23.1.1 78907 1eluA 390 1.38e+01 1elqA c.67.1.3 34434 1oygA 447 1.40e+01 b.67.2.2 93726 1lfwA 470 1.41e+01 c.56.5.4,d.58.19.1 77942,77943 1vpdA 299 1.41e+01 1iznB 277 1.47e+01 e.43.1.2 83848 1khxA 227 1.48e+01 b.26.1.1 68631 1whi 122 1.49e+01 1whi b.39.1.1 24810 1b00A 127 1.55e+01 3chy c.23.1.1 31122 1xq6A 253 1.56e+01 1bqcA 302 1.57e+01 1bqcA c.1.8.3 28831 1s0aA 429 1.59e+01 c.67.1.4 98263 1epuA 591 1.60e+01 1dn1A e.25.1.1 43358 1idpA 172 1.61e+01 d.17.4.1 83685 1kwfA 363 1.66e+01 a.102.1.2 73078 2nacA 393 1.79e+01 2nadA c.2.1.4,c.23.12.1 30088,31348 1imjA 210 1.82e+01 c.69.1.23 71246 1h97A 147 1.88e+01 1h97A a.1.1.2 60812 1pwxA 254 1.88e+01 c.2.1.2 95262 1bn7A 294 1.93e+01 1bn6A c.69.1.8 34677 1jkmB 361 1.93e+01 1jkmA c.69.1.2 34634 1uq5A 263 2.05e+01 d.165.1.1 99778 1jbwA 428 2.06e+01 c.59.1.2,c.72.2.2 62860,62861 1gvnB 287 2.15e+01 c.37.1.21 76354 1ii7A 333 2.16e+01 1ii7A d.159.1.4 62415 1anf 370 2.19e+01 4mbp c.94.1.1 35776 1a8y 367 2.22e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1d4oA 184 2.29e+01 1d4oA c.31.1.4 31748 1n93X 375 2.30e+01 a.206.1.1 91707 1v33A 366 2.31e+01 d.264.1.1 100278 1g8pA 350 2.33e+01 1g8pA c.37.1.20 60376 1h6kA 757 2.36e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1jmvA 141 2.40e+01 c.26.2.4 66897 1iyjB 817 2.48e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 76948,76949,76950,76951,76952 1efpB 252 2.49e+01 1efvB c.26.2.3 31636 1t0bA 252 2.53e+01 c.23.16.6 106199 1ek6A 348 2.54e+01 1xel c.2.1.2 29800 1fiqC 763 2.58e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1ewfA 456 2.60e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1gt1A 159 2.61e+01 b.60.1.1 90515 1wcv1 257 2.63e+01 1aquA 297 2.63e+01 1aquA c.37.1.5 31942 1fecA 490 2.66e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1b93A 152 2.68e+01 1b93A c.24.1.2 31507 5nul 138 2.72e+01 5nul c.23.5.1 31191 1jeyB 565 2.76e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 1w53A 84 2.77e+01 a.186.1.2 109175 1fs7A 485 2.83e+01 1qdbA a.138.1.3 19691 1us5A 314 2.89e+01 c.94.1.1 99856 1vhnA 318 2.98e+01 c.1.4.1 100693 1e8aA 91 2.99e+01 1b4cA a.39.1.2 17188 1hh1A 143 3.05e+01 1gefA c.52.1.18 61036 1ytvA 366 3.07e+01 1gy8A 397 3.10e+01 c.2.1.2 83376 1n7hA 381 3.18e+01 c.2.1.2 80250 1ox0A 430 3.23e+01 c.95.1.1,c.95.1.1 87495,87496 1kjqA 391 3.45e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1x7yA 400 3.50e+01 1gpr 162 3.51e+01 1gpr b.84.3.1 28267 1g2bA 62 3.53e+01 1tud b.34.2.1 24488 1n9pA 207 3.54e+01 b.1.18.16 80343 1duvG 333 3.55e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1vdwA 254 3.61e+01 e.7.1.1 100569 1n13B 113 3.65e+01 1azo 232 3.66e+01 1azo c.52.1.14 33329 1vl2A 421 3.73e+01 c.26.2.1,d.210.1.1 108708,108709 1w4xA 542 3.74e+01 c.3.1.5,c.3.1.5 109171,109172 2gk3A 256 3.79e+01 1ii5A 233 4.08e+01 c.94.1.1 62412 1ccwA 137 4.08e+01 1be1 c.23.6.1 31238 1d0cA 444 4.09e+01 d.174.1.1 64769 1hqkA 154 4.11e+01 c.16.1.1 65902 1ca1 370 4.24e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1hxhA 253 4.25e+01 c.2.1.2 76725 1fc3A 120 4.25e+01 1fc3A a.4.6.3 16237 1iioA 84 4.31e+01 a.39.4.1 66150 1gk9A 260 4.39e+01 d.153.1.2 65246 1hynP 379 4.51e+01 1hynP d.112.1.2 61408 1b5pA 385 4.54e+01 c.67.1.1 90403 1qq5A 253 4.58e+01 1qq5A c.108.1.1 43327 1cqxA 403 4.59e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1fs1B 141 4.62e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1dljA 402 4.62e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1hbnB 442 4.77e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 1jftA 340 4.78e+01 a.35.1.5,c.93.1.1 66652,66653 1f9vA 347 4.80e+01 1bg2 c.37.1.9 59745 1jf9A 408 4.82e+01 1c0nA c.67.1.3 62931 1g9gA 629 4.83e+01 a.102.1.2 83279 1bf5A 545 4.84e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1m93B 245 4.85e+01 1j24A 143 4.86e+01 c.52.1.20 84008 1f06A 320 4.86e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1ixcA 294 4.94e+01 a.4.5.37,c.94.1.1 83764,83765 1exbA 332 5.00e+01 1qrqA c.1.7.1 28666 1eu8A 409 5.02e+01 1eu8A c.94.1.1 59502 1txgA 335 5.02e+01 1eny 268 5.04e+01 1eny c.2.1.2 29910 1jb7B 260 5.08e+01 1otcB b.40.4.3 62839 1v7zA 260 5.08e+01 c.125.1.1 100488 1xttA 216 5.19e+01 1b0nA 111 5.20e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1aoeA 192 5.24e+01 1aoeA c.71.1.1 34923 1fobA 334 5.24e+01 c.1.8.3 83255 1oaa 259 5.29e+01 1oaa c.2.1.2 29829 1s5dA 240 5.33e+01 d.166.1.1 98541 1ad2 228 5.34e+01 1ad2 e.24.1.1 43353 1sg6A 393 5.41e+01 e.22.1.1 105522 1ug6A 431 5.41e+01 c.1.8.4 88490 1iow 306 5.52e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1u55A 188 5.53e+01 d.278.1.1 107677 1e5dA 402 5.61e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1p99A 295 5.61e+01 c.94.1.1 94384 1fmjA 351 5.68e+01 c.37.1.5 59879 1apyA 162 5.74e+01 1apyA d.153.1.5 42004 1n62B 809 5.75e+01 d.41.1.1,d.133.1.1 80092,80093 1dd9A 338 5.85e+01 1dd9A e.13.1.1 43254 1ag9A 175 5.94e+01 1rcf c.23.5.1 31178 1iejA 332 5.95e+01 1nnt c.94.1.2 62328 1e6wA 260 6.06e+01 1e6wA c.2.1.2 59326 1fiqB 350 6.22e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1u9cA 224 6.22e+01 1j9lA 247 6.23e+01 c.106.1.1 62762 1mg4A 113 6.27e+01 d.15.11.1 84953 1ehyA 294 6.29e+01 1ehyA c.69.1.11 34693 1hxn 219 6.30e+01 1hxn b.66.1.1 27529 1fc4A 401 6.31e+01 1bs0A c.67.1.4 59760 1vpt 348 6.36e+01 3mag c.66.1.25 34207 1hkhA 279 6.37e+01 c.69.1.12 90628 1fqiA 147 6.46e+01 1agrE a.91.1.1 18542 1gqiA 708 6.49e+01 c.1.8.10,d.92.2.2 76279,76280 1o66A 275 6.49e+01 c.1.12.8 92547 1vjuA 309 6.53e+01 d.248.1.1 100835 1hjsA 332 6.68e+01 c.1.8.3 83492 1ng6A 148 6.72e+01 a.182.1.1 85670 1o2dA 371 6.74e+01 e.22.1.2 86591 1g8mA 593 6.77e+01 1g8mA c.24.1.3,c.97.2.1 60371,60372 1rqpA 299 6.78e+01 b.141.1.1,c.132.1.1 97754,97755 1bebA 162 6.82e+01 1bebA b.60.1.1 27115 1h70A 255 6.86e+01 1h70A d.126.1.3 60711 1b7yB 785 6.89e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1efvB 255 6.90e+01 1efvB c.26.2.3 31634 1g8eA 116 7.08e+01 1g8eA a.145.1.1 60346 1tfzA 424 7.12e+01 d.32.1.3,d.32.1.3 106886,106887 1tqgA 105 7.18e+01 a.24.10.3 107224 1uk8A 282 7.24e+01 c.69.1.10 107907 1vkfA 188 7.35e+01 c.1.29.1 108656 1ijbA 202 7.47e+01 c.62.1.1 71229 2gfaA 119 7.49e+01 1p9aG 290 7.50e+01 c.10.2.7 87990 1ihoA 283 7.56e+01 1ihoA c.26.1.4 62390 1b24A 188 7.64e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 1y8oB 128 7.66e+01 1v9yA 167 7.73e+01 d.110.3.2 108454 1vkpA 383 7.84e+01 d.126.1.6 108686 1j77A 209 7.85e+01 1j77A a.132.1.2 62674 1g63A 181 7.86e+01 1g5qA c.34.1.1 60299 1f0lA 535 7.90e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1nzjA 298 7.92e+01 c.26.1.1 92377 1ev7A 317 8.02e+01 1ev7B c.52.1.9 33315 1c7sA 858 8.04e+01 1qba 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